ELK
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G23380 AT1G23380 AT1G70510 AT1G70510 |
| fragaria_vesca | FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_5g05530 FvH4_5g05530 |
| malus_domestica | MD06G1171700.v1.1 MD13G1095800.v1.1 MD14G1177200.v1.1 MD16G1097200.v1.1 |
| prunus_persica | Prupe.1G249600_v2.0.a1 Prupe.5G171100_v2.0.a1 |
| pyrus_communis | pycom06g15280 pycom13g08340 pycom14g14800 pycom16g08280 |
| rosa_chinensis | RchiOBHm_Chr4g0433571 RchiOBHm_Chr7g0193251 |
| rosa_laevigata | RLG00000004283 RLG00000006743 |
| rosa_multiflora | Rmu_sc0017266.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00262250 Rroxscaffold_5G00375060 |
| rosa_rugosa | Rorug04G0269800 Rorug07G0008500 Rorug07G0008600 |
| rosa_samantha | Rh4AG324700 Rh4BG332400 Rh4CG347700 Rh4DG328800 Rh7AG134100 Rh7BG135100 Rh7CG138100 Rh7DG136100 |
| rosa_wichuraiana | Rw4G028100 Rw7G011470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 247 |
| AciI | CCGC | 3 cut(s) | 12, 245, 247 |
| AclWI | GGATC | 2 cut(s) | 32, 105 |
| AgsI | TTSAA | 3 cut(s) | 18, 85, 136 |
| AluBI | AGCT | 1 cut(s) | 154 |
| AluI | AGCT | 1 cut(s) | 154 |
| Alw26I | GTCTC | 1 cut(s) | 140 |
| AlwI | GGATC | 2 cut(s) | 32, 105 |
| AoxI | GGCC | 1 cut(s) | 107 |
| ApeKI | GCWGC | 2 cut(s) | 151, 185 |
| AsuHPI | GGTGA | 1 cut(s) | 118 |
| BbvI | GCAGC | 2 cut(s) | 163, 172 |
| BccI | CCATC | 1 cut(s) | 136 |
| BcoDI | GTCTC | 1 cut(s) | 140 |
| BisI | GCNGC | 2 cut(s) | 152, 186 |
| BlsI | GCNGC | 2 cut(s) | 153, 187 |
| BmsI | GCATC | 1 cut(s) | 172 |
| Bsa29I | ATCGAT | 1 cut(s) | 262 |
| BsaJI | CCNNGG | 1 cut(s) | 245 |
| BseCI | ATCGAT | 1 cut(s) | 262 |
| BseDI | CCNNGG | 1 cut(s) | 245 |
| BseRI | GAGGAG | 1 cut(s) | 234 |
| BseXI | GCAGC | 2 cut(s) | 163, 172 |
| Bsh1236I | CGCG | 1 cut(s) | 247 |
| BshFI | GGCC | 1 cut(s) | 109 |
| BshVI | ATCGAT | 1 cut(s) | 262 |
| BsmAI | GTCTC | 1 cut(s) | 140 |
| BsmBI | CGTCTC | 1 cut(s) | 140 |
| BsnI | GGCC | 1 cut(s) | 109 |
| Bsp143I | GATC | 5 cut(s) | 37, 49, 92, 97, 259 |
| BspACI | CCGC | 3 cut(s) | 12, 245, 247 |
| BspANI | GGCC | 1 cut(s) | 109 |
| BspDI | ATCGAT | 1 cut(s) | 262 |
| BspFNI | CGCG | 1 cut(s) | 247 |
| BspPI | GGATC | 2 cut(s) | 32, 105 |
| BssECI | CCNNGG | 1 cut(s) | 245 |
| BssMI | GATC | 5 cut(s) | 37, 49, 92, 97, 259 |
| Bst6I | CTCTTC | 1 cut(s) | 59 |
| BstDSI | CCRYGG | 1 cut(s) | 245 |
| BstFNI | CGCG | 1 cut(s) | 247 |
| BstKTI | GATC | 5 cut(s) | 40, 52, 95, 100, 262 |
| BstMAI | GTCTC | 1 cut(s) | 140 |
| BstMBI | GATC | 5 cut(s) | 37, 49, 92, 97, 259 |
| BstUI | CGCG | 1 cut(s) | 247 |
| BstV1I | GCAGC | 2 cut(s) | 163, 172 |
| BstX2I | RGATCY | 1 cut(s) | 97 |
| BstYI | RGATCY | 1 cut(s) | 97 |
| Bsu15I | ATCGAT | 1 cut(s) | 262 |
| BsuRI | GGCC | 1 cut(s) | 109 |
| BsuTUI | ATCGAT | 1 cut(s) | 262 |
| BtgI | CCRYGG | 1 cut(s) | 245 |
| Cfr42I | CCGCGG | 1 cut(s) | 248 |
| ClaI | ATCGAT | 1 cut(s) | 262 |
| CseI | GACGC | 1 cut(s) | 157 |
| CviAII | CATG | 1 cut(s) | 58 |
| CviJI | RGCY | 2 cut(s) | 109, 154 |
| CviKI_1 | RGCY | 2 cut(s) | 109, 154 |
| DpnI | GATC | 5 cut(s) | 39, 51, 94, 99, 261 |
| DpnII | GATC | 5 cut(s) | 37, 49, 92, 97, 259 |
| Eam1104I | CTCTTC | 1 cut(s) | 59 |
| EarI | CTCTTC | 1 cut(s) | 59 |
| Esp3I | CGTCTC | 1 cut(s) | 140 |
| FaeI | CATG | 1 cut(s) | 61 |
| FaiI | YATR | 1 cut(s) | 59 |
| FatI | CATG | 1 cut(s) | 57 |
| Fnu4HI | GCNGC | 2 cut(s) | 152, 186 |
| Fsp4HI | GCNGC | 2 cut(s) | 152, 186 |
| GluI | GCNGC | 2 cut(s) | 152, 186 |
| HaeIII | GGCC | 1 cut(s) | 109 |
| HgaI | GACGC | 1 cut(s) | 157 |
| Hin1II | CATG | 1 cut(s) | 61 |
| HinfI | GANTC | 1 cut(s) | 239 |
| HphI | GGTGA | 1 cut(s) | 118 |
| Hpy188I | TCNGA | 2 cut(s) | 92, 97 |
| Hpy188III | TCNNGA | 2 cut(s) | 41, 133 |
| HpyAV | CCTTC | 2 cut(s) | 139, 203 |
| HpyCH4V | TGCA | 1 cut(s) | 24 |
| Hsp92II | CATG | 1 cut(s) | 61 |
| KspI | CCGCGG | 1 cut(s) | 248 |
| Kzo9I | GATC | 5 cut(s) | 37, 49, 92, 97, 259 |
| LpnPI | CCDG | 2 cut(s) | 54, 174 |
| Lsp1109I | GCAGC | 2 cut(s) | 163, 172 |
| LweI | GCATC | 1 cut(s) | 172 |
| MaeIII | GTNAC | 1 cut(s) | 65 |
| MalI | GATC | 5 cut(s) | 39, 51, 94, 99, 261 |
| MboI | GATC | 5 cut(s) | 37, 49, 92, 97, 259 |
| MboII | GAAGA | 3 cut(s) | 46, 215, 218 |
| MflI | RGATCY | 1 cut(s) | 97 |
| MlyI | GAGTC | 1 cut(s) | 233 |
| MnlI | CCTC | 4 cut(s) | 56, 99, 212, 223 |
| MspA1I | CMGCKG | 1 cut(s) | 247 |
| MvnI | CGCG | 1 cut(s) | 247 |
| NdeII | GATC | 5 cut(s) | 37, 49, 92, 97, 259 |
| NlaIII | CATG | 1 cut(s) | 61 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 101 |
| PkrI | GCNGC | 2 cut(s) | 153, 187 |
| PleI | GAGTC | 1 cut(s) | 233 |
| PpsI | GAGTC | 1 cut(s) | 233 |
| PsuI | RGATCY | 1 cut(s) | 97 |
| SacII | CCGCGG | 1 cut(s) | 248 |
| SatI | GCNGC | 2 cut(s) | 152, 186 |
| Sau3AI | GATC | 5 cut(s) | 37, 49, 92, 97, 259 |
| SchI | GAGTC | 1 cut(s) | 233 |
| SetI | ASST | 3 cut(s) | 48, 131, 156 |
| SfaNI | GCATC | 1 cut(s) | 172 |
| Sfr303I | CCGCGG | 1 cut(s) | 248 |
| SgrBI | CCGCGG | 1 cut(s) | 248 |
| SsiI | CCGC | 3 cut(s) | 12, 245, 247 |
| SspI | AATATT | 1 cut(s) | 78 |
| TaqI | TCGA | 2 cut(s) | 48, 262 |
| TseI | GCWGC | 2 cut(s) | 151, 185 |
| TspDTI | ATGAA | 3 cut(s) | 46, 132, 183 |