pycom13g08340

Homeobox protein knotted-1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
5548405 .. 5556447
8043 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08340.5

Sequence Viewer

Length: 1059 bp
ATGGAGGAAATGTACGGATTGCAATCAACAGCCGACTATGGGGACACAGGGTTTCAATCAACGACGGAGTACGATGACAGGGGGGCGTTGATGACGCCGGAGAATCTGATACTGCCGCTGGATTACCACAGCCTTCTGCACTCGTCCGTAGCCTTCCGCGAGCACAATCACCACCAACATCAACGGGAGGCGATGTTCGGATCGAACGACATCGTGTTGTACTCGGCAGCGTCAGAAGCTGCTTCGACGATAATCGCGCAACGCGAGGAGGACGTATTCAGCGCCATCAAAACCAGAATCGCGTCGCATCCGACGTACCCTAGGCTCATTCACGCATACATCGAGTGCCAGAAGGTTGGGGCGCCGCCCGAAATAGCGAGTTTCTTGGACGAATTCCGACGAGAAAACGGCTTGTACAAAACGCAGGGAGAATACTCATGTAATTCTAGTTCGATGTCGTCCTCCACATGTTTGGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGACATTTTGGTGAAGTACAAATCAGATCTATCCAGGCCTTTTGATGAAGCCACCTCTTTTTTGAGCAAGATCGAAACGCAACTCACAAACCTCTGCACTTCATCATCTGCTCATGCCTCTTCCTCCGTTAGAACCCTCTGCGATGAAGGTGGTGGCATGTCATCGGATGAGGATTTCAGCGGAGGCGGAATAGATGTGCAGGAAGCCCAACAAGGAGGTGAAGATCGAGATCTCAAGGATCGGCTTATGCGTAGGTTTGGCAGTCATCTCAGCACCTTGAAGCTCGAATTCTCCAAGAAGAAGAAAAAAGGAAAGCTGCCGAAAGAAGCAAGGCAAACGTTACTTGATTGGTGGAGTACGCATTATAAATGGCCCTATCCAACGGAGGCTGATAAGATTGCACTGGCCGAATCGACGGGGCTAGATCAAAGGCAAATTAACAACTGGTTTATTAATCAGCGTAAGCGTCACTGGAGACCATCGGAGAACATGCAGTTTGAGGTGATGGATAATCTTACCGGACCATTCTTTACAAATGAATGA

Protein Analysis

353

Amino Acids

39.95

Weight (kDa)

5.18

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 882
AccB1I GGYRCC 1 cut(s) 361
AccII CGCG 4 cut(s) 159, 257, 264, 302
AciI CCGC 5 cut(s) 116, 157, 365, 696, 702
AclI AACGTT 1 cut(s) 854
AclWI GGATC 3 cut(s) 208, 476, 762
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 2 cut(s) 392, 803
AcyI GRCGYC 2 cut(s) 95, 362
AfaI GTAC 7 cut(s) 14, 71, 221, 317, 416, 533, 874
AfiI CCNNNNNNNGG 1 cut(s) 39
AflIII ACRYGT 1 cut(s) 467
AgsI TTSAA 2 cut(s) 56, 796
AjnI CCWGG 1 cut(s) 548
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 4 cut(s) 239, 490, 799, 832
AluI AGCT 4 cut(s) 239, 490, 799, 832
Alw21I GWGCWC 2 cut(s) 165, 492
Alw26I GTCTC 1 cut(s) 985
AlwI GGATC 3 cut(s) 208, 476, 762
AlwNI CAGNNNCTG 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 3 cut(s) 551, 887, 921
ApeKI GCWGC 3 cut(s) 227, 239, 832
ApoI RAATTY 2 cut(s) 392, 803
AseI ATTAAT 1 cut(s) 969
AspA2I CCTAGG 1 cut(s) 320
AspLEI GCGC 3 cut(s) 259, 284, 364
AspS9I GGNCC 2 cut(s) 888, 1037
AsuHPI GGTGA 4 cut(s) 161, 538, 746, 1030
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 1 cut(s) 1037
AvrII CCTAGG 1 cut(s) 320
BanI GGYRCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 492
Bbv12I GWGCWC 2 cut(s) 165, 492
BbvI GCAGC 3 cut(s) 226, 239, 819
BccI CCATC 3 cut(s) 293, 1003, 1015
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 550
BcoDI GTCTC 1 cut(s) 985
BfaI CTAG 3 cut(s) 321, 447, 938
BfoI RGCGCY 2 cut(s) 285, 365
BglII AGATCT 2 cut(s) 541, 745
BisI GCNGC 5 cut(s) 116, 228, 240, 365, 833
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 5 cut(s) 117, 229, 241, 366, 834
Bme1390I CCNGG 1 cut(s) 550
Bme18I GGWCC 1 cut(s) 1037
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 2 cut(s) 888, 1037
BmiI GGNNCC 2 cut(s) 363, 478
BmrFI CCNGG 1 cut(s) 550
BmsI GCATC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 1009
BpuEI CTTGAG 1 cut(s) 734
BsaBI GATNNNNATC 2 cut(s) 22, 744
BsaHI GRCGYC 2 cut(s) 95, 362
BsaI GGTCTC 1 cut(s) 985
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 1034
BsaXI ACNNNNNCTCC 3 cut(s) 26, 179, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 3 cut(s) 924, 965, 992
Bse8I GATNNNNATC 2 cut(s) 22, 744
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 2 cut(s) 307, 688
BseJI GATNNNNATC 2 cut(s) 22, 744
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 799
BseNI ACTGG 3 cut(s) 924, 965, 992
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 3 cut(s) 226, 239, 819
BsgI GTGCAG 3 cut(s) 122, 595, 734
Bsh1236I CGCG 4 cut(s) 159, 257, 264, 302
BshFI GGCC 3 cut(s) 553, 889, 923
BshNI GGYRCC 1 cut(s) 361
BsiHKAI GWGCWC 2 cut(s) 165, 492
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 2 cut(s) 98, 1035
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 985
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 3 cut(s) 553, 889, 923
Bso31I GGTCTC 1 cut(s) 985
BsoBI CYCGRG 1 cut(s) 485
Bsp1286I GDGCHC 2 cut(s) 165, 492
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 8 cut(s) 200, 481, 541, 585, 739, 745, 754, 940
BspACI CCGC 5 cut(s) 116, 157, 365, 696, 702
BspANI GGCC 3 cut(s) 553, 889, 923
BspCNI CTCAG 1 cut(s) 798
BspFNI CGCG 4 cut(s) 159, 257, 264, 302
BspLI GGNNCC 2 cut(s) 363, 478
BspPI GGATC 3 cut(s) 208, 476, 762
BspT107I GGYRCC 1 cut(s) 361
BspTNI GGTCTC 1 cut(s) 985
BsrGI TGTACA 1 cut(s) 414
BsrI ACTGG 3 cut(s) 924, 965, 992
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 8 cut(s) 200, 481, 541, 585, 739, 745, 754, 940
BssNI GRCGYC 2 cut(s) 95, 362
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 550
Bst6I CTCTTC 1 cut(s) 640
BstACI GRCGYC 2 cut(s) 95, 362
BstAUI TGTACA 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 785
BstF5I GGATG 2 cut(s) 307, 688
BstFNI CGCG 4 cut(s) 159, 257, 264, 302
BstH2I RGCGCY 2 cut(s) 285, 365
BstHHI GCGC 3 cut(s) 259, 284, 364
BstKTI GATC 8 cut(s) 203, 484, 544, 588, 742, 748, 757, 943
BstMAI GTCTC 1 cut(s) 985
BstMBI GATC 8 cut(s) 200, 481, 541, 585, 739, 745, 754, 940
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 550
BstNSI RCATGY 3 cut(s) 471, 676, 1009
BstSCI CCNGG 1 cut(s) 548
BstUI CGCG 4 cut(s) 159, 257, 264, 302
BstV1I GCAGC 3 cut(s) 226, 239, 819
BstX2I RGATCY 2 cut(s) 541, 745
BstXI CCANNNNNNTGG 2 cut(s) 356, 472
BstYI RGATCY 2 cut(s) 541, 745
BsuRI GGCC 3 cut(s) 553, 889, 923
BtgZI GCGATG 2 cut(s) 206, 672
BtsCI GGATG 2 cut(s) 307, 688
BtsIMutI CAGTG 2 cut(s) 917, 985
Cac8I GCNNGC 1 cut(s) 161
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 3 cut(s) 259, 284, 364
Cfr13I GGNCC 2 cut(s) 888, 1037
CseI GACGC 4 cut(s) 103, 219, 291, 971
Csp6I GTAC 7 cut(s) 13, 70, 220, 316, 415, 532, 873
CviAII CATG 6 cut(s) 438, 468, 502, 629, 673, 1006
CviQI GTAC 7 cut(s) 13, 70, 220, 316, 415, 532, 873
DdeI CTNAG 1 cut(s) 785
DinI GGCGCC 1 cut(s) 363
DpnI GATC 8 cut(s) 202, 483, 543, 587, 741, 747, 756, 942
DpnII GATC 8 cut(s) 200, 481, 541, 585, 739, 745, 754, 940
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 640
EciI GGCGGA 1 cut(s) 717
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 320
Eco147I AGGCCT 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 985
Eco47I GGWCC 1 cut(s) 1037
Eco53kI GAGCTC 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 490
EcoRI GAATTC 2 cut(s) 392, 803
EcoRII CCWGG 1 cut(s) 548
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 492
EgeI GGCGCC 1 cut(s) 363
EheI GGCGCC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 6 cut(s) 441, 471, 505, 632, 676, 1009
FaqI GGGAC 1 cut(s) 56
FatI CATG 6 cut(s) 437, 467, 501, 628, 672, 1005
Fnu4HI GCNGC 5 cut(s) 116, 228, 240, 365, 833
FokI GGATG 2 cut(s) 294, 695
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 5 cut(s) 116, 228, 240, 365, 833
FspBI CTAG 3 cut(s) 321, 447, 938
GlaI GCGC 3 cut(s) 258, 283, 363
GluI GCNGC 5 cut(s) 116, 228, 240, 365, 833
GsuI CTGGAG 1 cut(s) 1009
HaeII RGCGCY 2 cut(s) 285, 365
HaeIII GGCC 3 cut(s) 553, 889, 923
HapII CCGG 2 cut(s) 98, 1035
HgaI GACGC 4 cut(s) 103, 219, 291, 971
HhaI GCGC 3 cut(s) 259, 284, 364
Hin1I GRCGYC 2 cut(s) 95, 362
Hin1II CATG 6 cut(s) 441, 471, 505, 632, 676, 1009
Hin6I GCGC 3 cut(s) 257, 282, 362
HinP1I GCGC 3 cut(s) 257, 282, 362
HinfI GANTC 3 cut(s) 103, 297, 926
HpaII CCGG 2 cut(s) 98, 1035
HphI GGTGA 4 cut(s) 161, 538, 746, 1030
Hpy188I TCNGA 8 cut(s) 108, 200, 235, 312, 398, 541, 682, 1000
Hpy188III TCNNGA 2 cut(s) 485, 743
Hpy99I CGWCG 7 cut(s) 67, 250, 307, 316, 402, 497, 934
HpyAV CCTTC 4 cut(s) 143, 163, 346, 656
HpyCH4IV ACGT 3 cut(s) 273, 314, 854
HpyCH4V TGCA 6 cut(s) 22, 139, 612, 715, 917, 1009
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 785
HpySE526I ACGT 3 cut(s) 273, 314, 854
Hsp92I GRCGYC 2 cut(s) 95, 362
Hsp92II CATG 6 cut(s) 441, 471, 505, 632, 676, 1009
HspAI GCGC 3 cut(s) 257, 282, 362
KasI GGCGCC 1 cut(s) 361
Kzo9I GATC 8 cut(s) 200, 481, 541, 585, 739, 745, 754, 940
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 3 cut(s) 226, 239, 819
LweI GCATC 1 cut(s) 316
MaeI CTAG 3 cut(s) 321, 447, 938
MaeII ACGT 3 cut(s) 273, 314, 854
MaeIII GTNAC 2 cut(s) 855, 983
MalI GATC 8 cut(s) 202, 483, 543, 587, 741, 747, 756, 942
MboI GATC 8 cut(s) 200, 481, 541, 585, 739, 745, 754, 940
MboII GAAGA 4 cut(s) 627, 749, 826, 829
MflI RGATCY 2 cut(s) 541, 745
MhlI GDGCHC 2 cut(s) 165, 492
MluCI AATT 4 cut(s) 392, 442, 803, 951
Mly113I GGCGCC 1 cut(s) 362
MmeI TCCRAC 3 cut(s) 335, 421, 920
MseI TTAA 2 cut(s) 954, 969
MslI CAYNNNNRTG 1 cut(s) 524
MspA1I CMGCKG 2 cut(s) 118, 696
MspI CCGG 2 cut(s) 98, 1035
MspR9I CCNGG 1 cut(s) 550
MvaI CCWGG 1 cut(s) 550
MvnI CGCG 4 cut(s) 159, 257, 264, 302
MwoI GCNNNNNNNGC 1 cut(s) 236
NarI GGCGCC 1 cut(s) 362
NdeII GATC 8 cut(s) 200, 481, 541, 585, 739, 745, 754, 940
NlaIII CATG 6 cut(s) 441, 471, 505, 632, 676, 1009
NlaIV GGNNCC 2 cut(s) 363, 478
NmeAIII GCCGAG 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 983
NspI RCATGY 3 cut(s) 471, 676, 1009
PceI AGGCCT 1 cut(s) 553
PciI ACATGT 1 cut(s) 467
PcsI WCGNNNNNNNCGW 5 cut(s) 204, 261, 311, 339, 763
PfeI GAWTC 3 cut(s) 103, 297, 926
PkrI GCNGC 5 cut(s) 117, 229, 241, 366, 834
PluTI GGCGCC 1 cut(s) 365
PscI ACATGT 1 cut(s) 467
PshBI ATTAAT 1 cut(s) 969
PsiI TTATAA 1 cut(s) 882
Psp124BI GAGCTC 1 cut(s) 492
Psp1406I AACGTT 1 cut(s) 854
Psp6I CCWGG 1 cut(s) 548
PspGI CCWGG 1 cut(s) 548
PspN4I GGNNCC 2 cut(s) 363, 478
PspPI GGNCC 2 cut(s) 888, 1037
PsrI GAACNNNNNNTAC 2 cut(s) 433, 465
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 2 cut(s) 541, 745
RsaI GTAC 7 cut(s) 14, 71, 221, 317, 416, 533, 874
RsaNI GTAC 7 cut(s) 13, 70, 220, 316, 415, 532, 873
RseI CAYNNNNRTG 1 cut(s) 524
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 2 cut(s) 954, 969
SatI GCNGC 5 cut(s) 116, 228, 240, 365, 833
Sau3AI GATC 8 cut(s) 200, 481, 541, 585, 739, 745, 754, 940
Sau96I GGNCC 2 cut(s) 888, 1037
ScrFI CCNGG 1 cut(s) 550
SduI GDGCHC 2 cut(s) 165, 492
SfaNI GCATC 1 cut(s) 316
SfoI GGCGCC 1 cut(s) 363
SinI GGWCC 1 cut(s) 1037
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
Sse9I AATT 4 cut(s) 392, 442, 803, 951
SseBI AGGCCT 1 cut(s) 553
SsiI CCGC 5 cut(s) 116, 157, 365, 696, 702
SspDI GGCGCC 1 cut(s) 361
SspMI CTAG 3 cut(s) 321, 447, 938
SstI GAGCTC 1 cut(s) 492
StuI AGGCCT 1 cut(s) 553
StyD4I CCNGG 1 cut(s) 548
StyI CCWWGG 1 cut(s) 320
TaiI ACGT 3 cut(s) 276, 317, 857
TaqI TCGA 9 cut(s) 203, 245, 342, 452, 492, 588, 742, 801, 929
TasI AATT 4 cut(s) 392, 442, 803, 951
TatI WGTACW 3 cut(s) 219, 414, 531
TauI GCSGC 2 cut(s) 118, 367
TfiI GAWTC 3 cut(s) 103, 297, 926
Tru1I TTAA 2 cut(s) 954, 969
Tru9I TTAA 2 cut(s) 954, 969
TscAI CASTG 2 cut(s) 924, 992
TseFI GTSAC 1 cut(s) 983
TseI GCWGC 3 cut(s) 227, 239, 832
Tsp45I GTSAC 1 cut(s) 983
TspDTI ATGAA 4 cut(s) 490, 576, 606, 675
TspGWI ACGGA 5 cut(s) 30, 80, 136, 631, 914
TspRI CASTG 2 cut(s) 924, 992
VpaK11BI GGWCC 1 cut(s) 1037
VspI ATTAAT 1 cut(s) 969
XapI RAATTY 2 cut(s) 392, 803
XceI RCATGY 3 cut(s) 471, 676, 1009
XmaJI CCTAGG 1 cut(s) 320
XspI CTAG 3 cut(s) 321, 447, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.