Prupe.1G249600_v2.0.a1

Homeobox protein knotted-1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
26178706 .. 26183860
5155 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G249600.1

Sequence Viewer

Length: 1056 bp
ATGGAGGAAATGTACGGATTGCAATCAACGGCGGAGTGCGGGGACAAGGGTTTTCAATCAACGGCGGAGTACGAAGACAGGGCGCTGATGACCCCGGAAAATCTGATCCTACCGTTGGATTACCAAAGCCTGCTTGTCTCATCCGGAGCCTTCCGTGGGGAGCATCATCATCATCGGGTCCCGATGTTCGGATCGGACGACGTGGTACTGTACTCGGCCATGTCGGAGGCAGCTTCACCAACAATCACGCCGGAATTTCAACGCGAGGAAGACGTGTTTGGCGCCATCAAAGCCAAAATTGCATCGCACCCCACTTACCCTAGGCTCATTCACGCTTATATTGAGTGCCAGAAGGTAGGGGCGCCTCCGGAAATCGCGAGTTTCTTAGACGAAATCCGCCGAGAAAGCGACTTTTATAACTATAAGCAGCAGCAGCGAGGCTCTTGTAATTCTAATTCTTCTATGTCCTCCACGTATTTGGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGAGATGTTAGTGAAATACAAATCAGATCTCTCAAGGCCTTTTGATGAAGCCACCACTTTCTTGAACAAGATTGAACTGCAACTTAGCAATCTCTGCACTTCATCTGCTAACGCCTCCTCCATTAGAACCCTCTCCGATGAAGGCGGTGCGTCATCAGATGAGGATTTCAGTGGCGGAGAAATAGAAGTGCAGGAAGGTCAACAAAGGGGTGAAGATCGAGATCTCAAGGACCGGCTCATGCGTAGGTTTGGCAGTCACATTGGCACCTTGAAGCTTGAATTCTCCAAGAAGAAGAAGAAAGGAAAGCTACCAAAAGAAGCAAGGCAAACGTTGTTTGATTGGTGGAGTGTTCATTATAAATGGCCATACCCAACGGAGGCTGACAAGATTGCGCTGGCTGAATCGACGGGGCTAGATCAGAGGCAAATCAACAACTGGTTTATCAATCAGCGCAAGCGCCATTGGAGACCATCTGAGAACATGCAATTTGCCGTGATGGATAATATTGCTGGTCCATTTTTCACAGATGACTGA

Protein Analysis

352

Amino Acids

40.04

Weight (kDa)

5.1

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 417, 879
AccB1I GGYRCC 3 cut(s) 281, 361, 785
AccII CGCG 2 cut(s) 264, 377
AccIII TCCGGA 2 cut(s) 143, 367
AciI CCGC 6 cut(s) 32, 39, 65, 397, 666, 696
AclI AACGTT 1 cut(s) 851
AclWI GGATC 3 cut(s) 100, 199, 482
AcoI YGGCCR 2 cut(s) 216, 884
AcsI RAATTY 2 cut(s) 254, 800
AcyI GRCGYC 2 cut(s) 282, 362
AfaI GTAC 4 cut(s) 14, 71, 207, 212
AfiI CCNNNNNNNGG 4 cut(s) 115, 156, 188, 898
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 6 cut(s) 56, 260, 586, 596, 793, 800
AjiI CACGTC 2 cut(s) 202, 274
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 4 cut(s) 233, 496, 796, 829
AluI AGCT 4 cut(s) 233, 496, 796, 829
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 2 cut(s) 142, 982
AlwI GGATC 3 cut(s) 100, 199, 482
Ama87I CYCGRG 1 cut(s) 491
Aor13HI TCCGGA 2 cut(s) 143, 367
AoxI GGCC 3 cut(s) 216, 557, 884
ApeKI GCWGC 4 cut(s) 230, 427, 430, 433
ApoI RAATTY 2 cut(s) 254, 800
AspA2I CCTAGG 1 cut(s) 320
AspLEI GCGC 6 cut(s) 85, 284, 364, 916, 975, 981
AspS9I GGNCC 3 cut(s) 178, 751, 1034
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 228, 743
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 3 cut(s) 178, 751, 1034
AvrII CCTAGG 1 cut(s) 320
BalI TGGCCA 1 cut(s) 886
BanI GGYRCC 3 cut(s) 281, 361, 785
BanII GRGCYC 1 cut(s) 498
BbsI GAAGAC 2 cut(s) 81, 276
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 4 cut(s) 242, 439, 442, 445
BccI CCATC 3 cut(s) 293, 1000, 1012
BceAI ACGGC 3 cut(s) 45, 78, 998
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 142, 982
BfaI CTAG 2 cut(s) 321, 935
BfoI RGCGCY 4 cut(s) 86, 285, 365, 982
BglII AGATCT 2 cut(s) 547, 742
BisI GCNGC 4 cut(s) 231, 428, 431, 434
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 4 cut(s) 232, 429, 432, 435
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 3 cut(s) 178, 751, 1034
BmeT110I CYCGRG 1 cut(s) 491
BmgBI CACGTC 2 cut(s) 202, 274
BmgT120I GGNCC 3 cut(s) 178, 751, 1034
BmiI GGNNCC 7 cut(s) 148, 179, 180, 283, 363, 484, 787
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 172, 311
BpiI GAAGAC 2 cut(s) 81, 276
BpuEI CTTGAG 2 cut(s) 538, 731
BpuMI CCSGG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 474
BsaBI GATNNNNATC 2 cut(s) 22, 741
BsaHI GRCGYC 2 cut(s) 282, 362
BsaI GGTCTC 1 cut(s) 982
BsaJI CCNNGG 3 cut(s) 93, 154, 320
BsaWI WCCGGW 2 cut(s) 143, 367
BsaXI ACNNNNNCTCC 3 cut(s) 26, 623, 653
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 156, 188, 898
Bse118I RCCGGY 1 cut(s) 753
Bse1I ACTGG 1 cut(s) 962
Bse8I GATNNNNATC 2 cut(s) 22, 741
BseAI TCCGGA 2 cut(s) 143, 367
BseDI CCNNGG 3 cut(s) 93, 154, 320
BseGI GGATG 1 cut(s) 140
BseJI GATNNNNATC 2 cut(s) 22, 741
BseLI CCNNNNNNNGG 4 cut(s) 115, 156, 188, 898
BseMII CTCAG 1 cut(s) 987
BseNI ACTGG 1 cut(s) 962
BseRI GAGGAG 1 cut(s) 628
BseXI GCAGC 4 cut(s) 242, 439, 442, 445
BsgI GTGCAG 2 cut(s) 601, 731
Bsh1236I CGCG 2 cut(s) 264, 377
BshFI GGCC 3 cut(s) 218, 559, 886
BshNI GGYRCC 3 cut(s) 281, 361, 785
BsiHKAI GWGCWC 1 cut(s) 498
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 5 cut(s) 95, 144, 251, 368, 754
BslFI GGGAC 2 cut(s) 56, 164
BslI CCNNNNNNNGG 4 cut(s) 115, 156, 188, 898
BsmAI GTCTC 2 cut(s) 142, 982
BsmFI GGGAC 2 cut(s) 56, 164
BsnI GGCC 3 cut(s) 218, 559, 886
Bso31I GGTCTC 1 cut(s) 982
BsoBI CYCGRG 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 498
Bsp13I TCCGGA 2 cut(s) 143, 367
Bsp143I GATC 7 cut(s) 105, 191, 487, 547, 736, 742, 937
Bsp68I TCGCGA 1 cut(s) 377
BspACI CCGC 6 cut(s) 32, 39, 65, 397, 666, 696
BspANI GGCC 3 cut(s) 218, 559, 886
BspCNI CTCAG 1 cut(s) 988
BspEI TCCGGA 2 cut(s) 143, 367
BspFNI CGCG 2 cut(s) 264, 377
BspLI GGNNCC 7 cut(s) 148, 179, 180, 283, 363, 484, 787
BspPI GGATC 3 cut(s) 100, 199, 482
BspT107I GGYRCC 3 cut(s) 281, 361, 785
BspTNI GGTCTC 1 cut(s) 982
BsrFI RCCGGY 1 cut(s) 753
BsrI ACTGG 1 cut(s) 962
BssAI RCCGGY 1 cut(s) 753
BssECI CCNNGG 3 cut(s) 93, 154, 320
BssMI GATC 7 cut(s) 105, 191, 487, 547, 736, 742, 937
BssNI GRCGYC 2 cut(s) 282, 362
BssT1I CCWWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 114, 210
BstACI GRCGYC 2 cut(s) 282, 362
BstAPI GCANNNNNTGC 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 474
BstC8I GCNNGC 3 cut(s) 131, 918, 977
BstDEI CTNAG 3 cut(s) 385, 605, 996
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 140
BstFNI CGCG 2 cut(s) 264, 377
BstH2I RGCGCY 4 cut(s) 86, 285, 365, 982
BstHHI GCGC 6 cut(s) 85, 284, 364, 916, 975, 981
BstKTI GATC 7 cut(s) 108, 194, 490, 550, 739, 745, 940
BstMAI GTCTC 2 cut(s) 142, 982
BstMBI GATC 7 cut(s) 105, 191, 487, 547, 736, 742, 937
BstMWI GCNNNNNNNGC 5 cut(s) 290, 299, 405, 433, 615
BstNSI RCATGY 1 cut(s) 1006
BstSCI CCNGG 1 cut(s) 93
BstUI CGCG 2 cut(s) 264, 377
BstV1I GCAGC 4 cut(s) 242, 439, 442, 445
BstV2I GAAGAC 2 cut(s) 81, 276
BstX2I RGATCY 2 cut(s) 547, 742
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 2 cut(s) 547, 742
BsuRI GGCC 3 cut(s) 218, 559, 886
BtgI CCRYGG 1 cut(s) 154
BtgZI GCGATG 1 cut(s) 288
BtrI CACGTC 2 cut(s) 202, 274
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 697
BtuMI TCGCGA 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 131, 918, 977
CfoI GCGC 6 cut(s) 85, 284, 364, 916, 975, 981
Cfr10I RCCGGY 1 cut(s) 753
Cfr13I GGNCC 3 cut(s) 178, 751, 1034
CseI GACGC 1 cut(s) 660
Csp6I GTAC 4 cut(s) 13, 70, 206, 211
CviAII CATG 4 cut(s) 220, 508, 760, 1003
CviQI GTAC 4 cut(s) 13, 70, 206, 211
DdeI CTNAG 3 cut(s) 385, 605, 996
DinI GGCGCC 2 cut(s) 283, 363
DpnI GATC 7 cut(s) 107, 193, 489, 549, 738, 744, 939
DpnII GATC 7 cut(s) 105, 191, 487, 547, 736, 742, 937
EaeI YGGCCR 2 cut(s) 216, 884
EciI GGCGGA 4 cut(s) 47, 80, 386, 711
Ecl136II GAGCTC 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 320
Eco147I AGGCCT 1 cut(s) 559
Eco24I GRGCYC 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 982
Eco47I GGWCC 3 cut(s) 178, 751, 1034
Eco53kI GAGCTC 1 cut(s) 496
Eco88I CYCGRG 1 cut(s) 491
EcoICRI GAGCTC 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 800
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 498
EgeI GGCGCC 2 cut(s) 283, 363
EheI GGCGCC 2 cut(s) 283, 363
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 4 cut(s) 223, 511, 763, 1006
FaqI GGGAC 2 cut(s) 56, 164
FatI CATG 4 cut(s) 219, 507, 759, 1002
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 4 cut(s) 231, 428, 431, 434
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 4 cut(s) 231, 428, 431, 434
FspBI CTAG 2 cut(s) 321, 935
GlaI GCGC 6 cut(s) 84, 283, 363, 915, 974, 980
GluI GCNGC 4 cut(s) 231, 428, 431, 434
HaeII RGCGCY 4 cut(s) 86, 285, 365, 982
HaeIII GGCC 3 cut(s) 218, 559, 886
HapII CCGG 5 cut(s) 95, 144, 251, 368, 754
HgaI GACGC 1 cut(s) 660
HhaI GCGC 6 cut(s) 85, 284, 364, 916, 975, 981
Hin1I GRCGYC 2 cut(s) 282, 362
Hin1II CATG 4 cut(s) 223, 511, 763, 1006
Hin6I GCGC 6 cut(s) 83, 282, 362, 914, 973, 979
HinP1I GCGC 6 cut(s) 83, 282, 362, 914, 973, 979
HincII GTYRAC 1 cut(s) 722
HindII GTYRAC 1 cut(s) 722
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 1 cut(s) 923
HpaII CCGG 5 cut(s) 95, 144, 251, 368, 754
HphI GGTGA 2 cut(s) 228, 743
Hpy166II GTNNAC 1 cut(s) 722
Hpy188I TCNGA 9 cut(s) 105, 191, 196, 226, 547, 658, 679, 942, 997
Hpy188III TCNNGA 7 cut(s) 144, 181, 368, 376, 491, 583, 740
Hpy8I GTNNAC 1 cut(s) 722
Hpy99I CGWCG 3 cut(s) 203, 503, 931
HpyAV CCTTC 4 cut(s) 160, 346, 656, 710
HpyCH4III ACNGT 2 cut(s) 114, 210
HpyCH4IV ACGT 4 cut(s) 201, 273, 473, 851
HpyCH4V TGCA 6 cut(s) 22, 302, 601, 618, 712, 1006
HpyF10VI GCNNNNNNNGC 5 cut(s) 290, 299, 405, 433, 615
HpyF3I CTNAG 3 cut(s) 385, 605, 996
HpySE526I ACGT 4 cut(s) 201, 273, 473, 851
Hsp92I GRCGYC 2 cut(s) 282, 362
Hsp92II CATG 4 cut(s) 223, 511, 763, 1006
HspAI GCGC 6 cut(s) 83, 282, 362, 914, 973, 979
KasI GGCGCC 2 cut(s) 281, 361
KflI GGGWCCC 1 cut(s) 178
Kpn2I TCCGGA 2 cut(s) 143, 367
Kzo9I GATC 7 cut(s) 105, 191, 487, 547, 736, 742, 937
LmnI GCTCC 3 cut(s) 146, 160, 482
Lsp1109I GCAGC 4 cut(s) 242, 439, 442, 445
LweI GCATC 2 cut(s) 172, 311
MaeI CTAG 2 cut(s) 321, 935
MaeII ACGT 4 cut(s) 201, 273, 473, 851
MaeIII GTNAC 1 cut(s) 776
MalI GATC 7 cut(s) 107, 193, 489, 549, 738, 744, 939
MboI GATC 7 cut(s) 105, 191, 487, 547, 736, 742, 937
MboII GAAGA 7 cut(s) 86, 281, 450, 746, 823, 826, 829
MflI RGATCY 2 cut(s) 547, 742
MhlI GDGCHC 1 cut(s) 498
MlsI TGGCCA 1 cut(s) 886
MluCI AATT 6 cut(s) 254, 297, 448, 454, 800, 1007
MluNI TGGCCA 1 cut(s) 886
Mly113I GGCGCC 2 cut(s) 282, 362
MmeI TCCRAC 2 cut(s) 96, 204
Mox20I TGGCCA 1 cut(s) 886
MroI TCCGGA 2 cut(s) 143, 367
MscI TGGCCA 1 cut(s) 886
Msp20I TGGCCA 1 cut(s) 886
MspI CCGG 5 cut(s) 95, 144, 251, 368, 754
MspR9I CCNGG 1 cut(s) 95
MvnI CGCG 2 cut(s) 264, 377
MwoI GCNNNNNNNGC 5 cut(s) 290, 299, 405, 433, 615
NarI GGCGCC 2 cut(s) 282, 362
NciI CCSGG 1 cut(s) 95
NdeII GATC 7 cut(s) 105, 191, 487, 547, 736, 742, 937
NlaIII CATG 4 cut(s) 223, 511, 763, 1006
NlaIV GGNNCC 7 cut(s) 148, 179, 180, 283, 363, 484, 787
NmeAIII GCCGAG 2 cut(s) 194, 425
NmuCI GTSAC 1 cut(s) 776
NruI TCGCGA 1 cut(s) 377
NspI RCATGY 1 cut(s) 1006
PceI AGGCCT 1 cut(s) 559
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 1 cut(s) 923
PkrI GCNGC 4 cut(s) 232, 429, 432, 435
PluTI GGCGCC 2 cut(s) 285, 365
Ppu21I YACGTR 1 cut(s) 474
PpuMI RGGWCCY 1 cut(s) 178
PsiI TTATAA 2 cut(s) 417, 879
Psp124BI GAGCTC 1 cut(s) 498
Psp1406I AACGTT 1 cut(s) 851
Psp5II RGGWCCY 1 cut(s) 178
PspN4I GGNNCC 7 cut(s) 148, 179, 180, 283, 363, 484, 787
PspPI GGNCC 3 cut(s) 178, 751, 1034
PspPPI RGGWCCY 1 cut(s) 178
PsuI RGATCY 2 cut(s) 547, 742
RruI TCGCGA 1 cut(s) 377
RsaI GTAC 4 cut(s) 14, 71, 207, 212
RsaNI GTAC 4 cut(s) 13, 70, 206, 211
SacI GAGCTC 1 cut(s) 498
SatI GCNGC 4 cut(s) 231, 428, 431, 434
Sau3AI GATC 7 cut(s) 105, 191, 487, 547, 736, 742, 937
Sau96I GGNCC 3 cut(s) 178, 751, 1034
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 2 cut(s) 172, 311
SfoI GGCGCC 2 cut(s) 283, 363
SinI GGWCC 3 cut(s) 178, 751, 1034
SmlI CTYRAG 2 cut(s) 553, 746
SmoI CTYRAG 2 cut(s) 553, 746
Sse9I AATT 6 cut(s) 254, 297, 448, 454, 800, 1007
SseBI AGGCCT 1 cut(s) 559
SsiI CCGC 6 cut(s) 32, 39, 65, 397, 666, 696
SspDI GGCGCC 2 cut(s) 281, 361
SspI AATATT 1 cut(s) 1027
SspMI CTAG 2 cut(s) 321, 935
SstI GAGCTC 1 cut(s) 498
StuI AGGCCT 1 cut(s) 559
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 114, 210
TaiI ACGT 4 cut(s) 204, 276, 476, 854
TaqI TCGA 3 cut(s) 498, 739, 926
TasI AATT 6 cut(s) 254, 297, 448, 454, 800, 1007
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 923
TscAI CASTG 1 cut(s) 697
TseFI GTSAC 1 cut(s) 776
TseI GCWGC 4 cut(s) 230, 427, 430, 433
Tsp45I GTSAC 1 cut(s) 776
TspDTI ATGAA 5 cut(s) 496, 582, 612, 675, 863
TspGWI ACGGA 3 cut(s) 30, 143, 911
TspRI CASTG 1 cut(s) 697
VpaK11BI GGWCC 3 cut(s) 178, 751, 1034
XapI RAATTY 2 cut(s) 254, 800
XceI RCATGY 1 cut(s) 1006
XmaJI CCTAGG 1 cut(s) 320
XspI CTAG 2 cut(s) 321, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.