FvH4_4g26090

Homeobox protein knotted-1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
27629807 .. 27636536
6730 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26090.t4

Sequence Viewer

Length: 1044 bp
ATGGAGGAAATGTACGGATTCCAATCAGCGGTGGTCGACTACGGGGATAAGTCAGCTGACTACGCCGACAGGGCCCTCATGACGCCGGAGAATCTGATCCTACCGATGGATTACCAGAGCCTGCTATCCTCCGGAGCTTTCCGCGACCATCGGGTGCCGATGATGTTCGGATCCGACGTCGGCGACTTGTACTCTGCCATATCCTCGGCACCGGAGTTTCGGCGCGGAGGAGACGAAGATGTTTTCGGTGCCATCAAAGCCAAAATTGCTTCCCATCCAAGCTACCCTAGACTCATTGAGGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCGGAGATAGCGAGCTTCTTGGAGGAAATCCGACGAGAAAACGACCTATATAAGCGGGAAAGAGACGCTGCTATGTCCACGTGTTTAGGGGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGATATGCTCGTCAAGTACAAATCCGATCTCGCAAGGCCTTTTGATGAAGCCACCACTTTCTTGAACAAGATTGAAACGCAGCTCAGCAATCTCCGCATTCGAACTCTATCCGATGAAGGTGCTGCGTCATCAGAGGAGGAGTTCAGCGGAGGTGAATTAGAGGTACAAGAAGCTCAGACTAGGGGAGAAGATCGAGATCTCAAAGATAAACTTCTACGTAAGTTTGGCAGTCACATTGGCACCTTGAAGCTGGAGTTCTCCAAGAAGAAGAAGAAAGGAAAGCTTCCGAAGGAGGCAAGACAAGCCTTACTTCAGTGGTGGAGTGTTCACTATAAATGGCCATACCCGACGGGCTCGATCAGAGGCAAATCAACAACTGGTTCATCAATCAACGGAAGCGACACTGGAGACCATCGGAAAACATGCAATTCGCCGTTATGGATAACCTTTCCGGACCATTCTTTGCAGATGATTGAGGTGCTACATGTATATATGTACTCTCAAATGCTTCTCCTCATGATTCATGATCATAATCTATTTATTATGCTACAAATAGTTTGTACCTTAATCCGGTGTACATGA

Protein Analysis

348

Amino Acids

39.41

Weight (kDa)

5.4

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 84 - 126 1.9e-21 KNOX1 domain
KNOX2 PF03791 139 - 185 1.4e-25 KNOX2 domain
ELK PF03789 220 - 241 7.2e-08 ELK domain
Homeobox_KN PF05920 260 - 299 2e-18 Homeobox KN domain
Homeodomain PF00046 267 - 300 6.2e-07 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccB1I GGYRCC 4 cut(s) 154, 208, 248, 701
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 1 cut(s) 36
AccII CGCG 2 cut(s) 144, 225
AccIII TCCGGA 3 cut(s) 131, 334, 913
AciI CCGC 6 cut(s) 29, 142, 225, 388, 556, 609
AclWI GGATC 4 cut(s) 91, 165, 178, 422
AcoI YGGCCR 1 cut(s) 800
AcuI CTGAAG 1 cut(s) 758
AcvI CACGTG 1 cut(s) 414
AcyI GRCGYC 2 cut(s) 83, 177
AfaI GTAC 7 cut(s) 14, 191, 479, 627, 959, 1024, 1039
AfiI CCNNNNNNNGG 4 cut(s) 28, 106, 322, 1032
AflIII ACRYGT 2 cut(s) 413, 946
AgsI TTSAA 3 cut(s) 526, 536, 709
AluBI AGCT 9 cut(s) 56, 137, 282, 348, 436, 544, 635, 712, 745
AluI AGCT 9 cut(s) 56, 137, 282, 348, 436, 544, 635, 712, 745
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 3 cut(s) 225, 390, 864
AlwI GGATC 4 cut(s) 91, 165, 178, 422
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 431
Aor13HI TCCGGA 3 cut(s) 131, 334, 913
AoxI GGCC 5 cut(s) 72, 300, 423, 497, 800
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 3 cut(s) 401, 541, 584
AspLEI GCGC 2 cut(s) 225, 331
AspS9I GGNCC 4 cut(s) 72, 73, 423, 916
AsuHPI GGTGA 1 cut(s) 626
AsuII TTCGAA 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 431
AvaII GGWCC 1 cut(s) 916
BaeGI GKGCMC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 802
BamHI GGATCC 1 cut(s) 170
BanI GGYRCC 4 cut(s) 154, 208, 248, 701
BanII GRGCYC 3 cut(s) 76, 438, 818
BbrPI CACGTG 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 3 cut(s) 388, 553, 571
BccI CCATC 5 cut(s) 100, 156, 260, 282, 882
BceAI ACGGC 1 cut(s) 880
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BclI TGATCA 1 cut(s) 988
BcoDI GTCTC 3 cut(s) 225, 390, 864
BfaI CTAG 2 cut(s) 288, 642
BfoI RGCGCY 1 cut(s) 332
BglI GCCNNNNNGGC 1 cut(s) 71
BglII AGATCT 1 cut(s) 658
BisI GCNGC 3 cut(s) 402, 542, 585
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 3 cut(s) 403, 543, 586
Bme18I GGWCC 1 cut(s) 916
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 4 cut(s) 72, 73, 423, 916
BmiI GGNNCC 7 cut(s) 74, 156, 172, 210, 250, 424, 703
BpmI CTGGAG 2 cut(s) 734, 888
Bpu1102I GCTNAGC 1 cut(s) 545
Bpu14I TTCGAA 1 cut(s) 562
Bsa29I ATCGAT 1 cut(s) 309
BsaAI YACGTR 2 cut(s) 414, 680
BsaBI GATNNNNATC 3 cut(s) 22, 657, 993
BsaHI GRCGYC 2 cut(s) 83, 177
BsaI GGTCTC 1 cut(s) 864
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 5 cut(s) 131, 211, 334, 913, 1032
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 106, 322, 1032
Bse1I ACTGG 2 cut(s) 844, 871
Bse8I GATNNNNATC 3 cut(s) 22, 657, 993
BseAI TCCGGA 3 cut(s) 131, 334, 913
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 3 cut(s) 22, 657, 993
BseLI CCNNNNNNNGG 4 cut(s) 28, 106, 322, 1032
BseMII CTCAG 2 cut(s) 559, 650
BseNI ACTGG 2 cut(s) 844, 871
BseRI GAGGAG 4 cut(s) 243, 611, 614, 965
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 3 cut(s) 388, 553, 571
Bsh1236I CGCG 2 cut(s) 144, 225
BshFI GGCC 5 cut(s) 74, 302, 425, 499, 802
BshNI GGYRCC 4 cut(s) 154, 208, 248, 701
BshVI ATCGAT 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 6 cut(s) 86, 132, 212, 335, 914, 1033
BslI CCNNNNNNNGG 4 cut(s) 28, 106, 322, 1032
BsmAI GTCTC 3 cut(s) 225, 390, 864
BsmBI CGTCTC 2 cut(s) 225, 390
BsmI GAATGC 1 cut(s) 558
BsnI GGCC 5 cut(s) 74, 302, 425, 499, 802
Bso31I GGTCTC 1 cut(s) 864
BsoBI CYCGRG 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 562
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 3 cut(s) 76, 438, 818
Bsp13I TCCGGA 3 cut(s) 131, 334, 913
Bsp1407I TGTACA 1 cut(s) 1037
Bsp143I GATC 8 cut(s) 96, 170, 427, 487, 652, 658, 819, 988
Bsp1720I GCTNAGC 1 cut(s) 545
BspACI CCGC 6 cut(s) 29, 142, 225, 388, 556, 609
BspANI GGCC 5 cut(s) 74, 302, 425, 499, 802
BspCNI CTCAG 2 cut(s) 558, 649
BspDI ATCGAT 1 cut(s) 309
BspEI TCCGGA 3 cut(s) 131, 334, 913
BspFNI CGCG 2 cut(s) 144, 225
BspHI TCATGA 3 cut(s) 78, 978, 985
BspLI GGNNCC 7 cut(s) 74, 156, 172, 210, 250, 424, 703
BspPI GGATC 4 cut(s) 91, 165, 178, 422
BspT104I TTCGAA 1 cut(s) 562
BspT107I GGYRCC 4 cut(s) 154, 208, 248, 701
BspTNI GGTCTC 1 cut(s) 864
BsrGI TGTACA 1 cut(s) 1037
BsrI ACTGG 2 cut(s) 844, 871
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 8 cut(s) 96, 170, 427, 487, 652, 658, 819, 988
BssNI GRCGYC 2 cut(s) 83, 177
BstACI GRCGYC 2 cut(s) 83, 177
BstAUI TGTACA 1 cut(s) 1037
BstBAI YACGTR 2 cut(s) 414, 680
BstBI TTCGAA 1 cut(s) 562
BstC8I GCNNGC 2 cut(s) 122, 346
BstDEI CTNAG 2 cut(s) 545, 636
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 2 cut(s) 144, 225
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 2 cut(s) 225, 331
BstKTI GATC 8 cut(s) 99, 173, 430, 490, 655, 661, 822, 991
BstMAI GTCTC 3 cut(s) 225, 390, 864
BstMBI GATC 8 cut(s) 96, 170, 427, 487, 652, 658, 819, 988
BstMWI GCNNNNNNNGC 6 cut(s) 62, 71, 257, 266, 555, 764
BstNSI RCATGY 2 cut(s) 888, 950
BstSLI GKGCMC 1 cut(s) 76
BstSNI TACGTA 1 cut(s) 680
BstUI CGCG 2 cut(s) 144, 225
BstV1I GCAGC 3 cut(s) 388, 553, 571
BstX2I RGATCY 2 cut(s) 170, 658
BstYI RGATCY 2 cut(s) 170, 658
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 5 cut(s) 74, 302, 425, 499, 802
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 2 cut(s) 782, 864
Cac8I GCNNGC 2 cut(s) 122, 346
CaiI CAGNNNCTG 1 cut(s) 121
CciI TCATGA 3 cut(s) 78, 978, 985
CfoI GCGC 2 cut(s) 225, 331
Cfr13I GGNCC 4 cut(s) 72, 73, 423, 916
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 3 cut(s) 91, 407, 576
Csp6I GTAC 7 cut(s) 13, 190, 478, 626, 958, 1023, 1038
CviAII CATG 7 cut(s) 79, 448, 885, 947, 979, 986, 1041
CviQI GTAC 7 cut(s) 13, 190, 478, 626, 958, 1023, 1038
DdeI CTNAG 2 cut(s) 545, 636
DpnI GATC 8 cut(s) 98, 172, 429, 489, 654, 660, 821, 990
DpnII GATC 8 cut(s) 96, 170, 427, 487, 652, 658, 819, 988
EaeI YGGCCR 1 cut(s) 800
Ecl136II GAGCTC 1 cut(s) 436
Eco105I TACGTA 1 cut(s) 680
Eco147I AGGCCT 2 cut(s) 302, 499
Eco24I GRGCYC 3 cut(s) 76, 438, 818
Eco31I GGTCTC 1 cut(s) 864
Eco47I GGWCC 1 cut(s) 916
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 758
Eco72I CACGTG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 436
EcoO109I RGGNCCY 2 cut(s) 72, 73
EcoT38I GRGCYC 3 cut(s) 76, 438, 818
Esp3I CGTCTC 2 cut(s) 225, 390
FaeI CATG 7 cut(s) 82, 451, 888, 950, 982, 989, 1044
FalI AAGNNNNNCTT 6 cut(s) 657, 689, 729, 761, 756, 788
FatI CATG 7 cut(s) 78, 447, 884, 946, 978, 985, 1040
FauI CCCGC 1 cut(s) 381
FbaI TGATCA 1 cut(s) 988
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 402, 542, 585
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 3 cut(s) 76, 438, 818
Fsp4HI GCNGC 3 cut(s) 402, 542, 585
FspBI CTAG 2 cut(s) 288, 642
GlaI GCGC 2 cut(s) 224, 330
GluI GCNGC 3 cut(s) 402, 542, 585
GsuI CTGGAG 2 cut(s) 734, 888
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 5 cut(s) 74, 302, 425, 499, 802
HapII CCGG 6 cut(s) 86, 132, 212, 335, 914, 1033
HgaI GACGC 3 cut(s) 91, 407, 576
HhaI GCGC 2 cut(s) 225, 331
Hin1I GRCGYC 2 cut(s) 83, 177
Hin1II CATG 7 cut(s) 82, 451, 888, 950, 982, 989, 1044
Hin6I GCGC 2 cut(s) 223, 329
HinP1I GCGC 2 cut(s) 223, 329
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 4 cut(s) 18, 91, 291, 982
HpaII CCGG 6 cut(s) 86, 132, 212, 335, 914, 1033
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 4 cut(s) 37, 411, 790, 1038
Hpy188III TCNNGA 9 cut(s) 79, 132, 335, 431, 523, 656, 914, 979, 986
Hpy8I GTNNAC 4 cut(s) 37, 411, 790, 1038
Hpy99I CGWCG 5 cut(s) 179, 182, 369, 443, 814
HpyAV CCTTC 3 cut(s) 313, 572, 745
HpyCH4IV ACGT 3 cut(s) 177, 413, 679
HpyCH4V TGCA 2 cut(s) 888, 928
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 71, 257, 266, 555, 764
HpyF3I CTNAG 2 cut(s) 545, 636
HpySE526I ACGT 3 cut(s) 177, 413, 679
Hsp92I GRCGYC 2 cut(s) 83, 177
Hsp92II CATG 7 cut(s) 82, 451, 888, 950, 982, 989, 1044
HspAI GCGC 2 cut(s) 223, 329
Kpn2I TCCGGA 3 cut(s) 131, 334, 913
Ksp22I TGATCA 1 cut(s) 988
Kzo9I GATC 8 cut(s) 96, 170, 427, 487, 652, 658, 819, 988
LmnI GCTCC 2 cut(s) 134, 326
Lsp1109I GCAGC 3 cut(s) 388, 553, 571
MaeI CTAG 2 cut(s) 288, 642
MaeII ACGT 3 cut(s) 177, 413, 679
MaeIII GTNAC 1 cut(s) 692
MalI GATC 8 cut(s) 98, 172, 429, 489, 654, 660, 821, 990
MboI GATC 8 cut(s) 96, 170, 427, 487, 652, 658, 819, 988
MboII GAAGA 5 cut(s) 248, 662, 739, 742, 745
MflI RGATCY 2 cut(s) 170, 658
MhlI GDGCHC 3 cut(s) 76, 438, 818
MlsI TGGCCA 1 cut(s) 802
MluCI AATT 3 cut(s) 264, 617, 889
MluNI TGGCCA 1 cut(s) 802
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 2 cut(s) 198, 388
Mox20I TGGCCA 1 cut(s) 802
MroI TCCGGA 3 cut(s) 131, 334, 913
MscI TGGCCA 1 cut(s) 802
MseI TTAA 1 cut(s) 1028
Msp20I TGGCCA 1 cut(s) 802
MspA1I CMGCKG 3 cut(s) 29, 56, 609
MspI CCGG 6 cut(s) 86, 132, 212, 335, 914, 1033
Mva1269I GAATGC 1 cut(s) 558
MvnI CGCG 2 cut(s) 144, 225
MwoI GCNNNNNNNGC 6 cut(s) 62, 71, 257, 266, 555, 764
NdeII GATC 8 cut(s) 96, 170, 427, 487, 652, 658, 819, 988
NlaIII CATG 7 cut(s) 82, 451, 888, 950, 982, 989, 1044
NlaIV GGNNCC 7 cut(s) 74, 156, 172, 210, 250, 424, 703
NmeAIII GCCGAG 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 692
NspI RCATGY 2 cut(s) 888, 950
NspV TTCGAA 1 cut(s) 562
PagI TCATGA 3 cut(s) 78, 978, 985
PceI AGGCCT 2 cut(s) 302, 499
PciI ACATGT 1 cut(s) 946
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 558
PfeI GAWTC 3 cut(s) 18, 91, 982
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 3 cut(s) 403, 543, 586
PleI GAGTC 1 cut(s) 285
PmaCI CACGTG 1 cut(s) 414
PmlI CACGTG 1 cut(s) 414
PpsI GAGTC 1 cut(s) 285
Ppu21I YACGTR 2 cut(s) 414, 680
PscI ACATGT 1 cut(s) 946
Psp124BI GAGCTC 1 cut(s) 438
PspCI CACGTG 1 cut(s) 414
PspN4I GGNNCC 7 cut(s) 74, 156, 172, 210, 250, 424, 703
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 4 cut(s) 72, 73, 423, 916
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 2 cut(s) 170, 658
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 7 cut(s) 14, 191, 479, 627, 959, 1024, 1039
RsaNI GTAC 7 cut(s) 13, 190, 478, 626, 958, 1023, 1038
SacI GAGCTC 1 cut(s) 438
SalI GTCGAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 1028
SatI GCNGC 3 cut(s) 402, 542, 585
Sau3AI GATC 8 cut(s) 96, 170, 427, 487, 652, 658, 819, 988
Sau96I GGNCC 4 cut(s) 72, 73, 423, 916
SchI GAGTC 1 cut(s) 285
SduI GDGCHC 3 cut(s) 76, 438, 818
SfuI TTCGAA 1 cut(s) 562
SinI GGWCC 1 cut(s) 916
SnaBI TACGTA 1 cut(s) 680
Sse9I AATT 3 cut(s) 264, 617, 889
SseBI AGGCCT 2 cut(s) 302, 499
SsiI CCGC 6 cut(s) 29, 142, 225, 388, 556, 609
SspMI CTAG 2 cut(s) 288, 642
SstI GAGCTC 1 cut(s) 438
StuI AGGCCT 2 cut(s) 302, 499
TaiI ACGT 3 cut(s) 180, 416, 682
TaqI TCGA 6 cut(s) 36, 309, 438, 562, 655, 818
TasI AATT 3 cut(s) 264, 617, 889
TatI WGTACW 4 cut(s) 189, 477, 957, 1037
TfiI GAWTC 3 cut(s) 18, 91, 982
Tru1I TTAA 1 cut(s) 1028
Tru9I TTAA 1 cut(s) 1028
TscAI CASTG 2 cut(s) 782, 871
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 3 cut(s) 401, 541, 584
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 5 cut(s) 436, 522, 591, 834, 974
TspGWI ACGGA 2 cut(s) 30, 870
TspRI CASTG 2 cut(s) 782, 871
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 916
XceI RCATGY 2 cut(s) 888, 950
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 2 cut(s) 288, 642
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.