AT1G30870

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004070
Physical Location & Seq
Forward (+)
10991478 .. 10993083
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30870.1

Sequence Viewer

Length: 1050 bp
ATGAAGTTGGCCGTGGTCTCAGTCGTTGTCATACTCGGAGTTCTCGTGGCTTGGCCGGTATCGGCTGGCCGAAAAGACTTACCTGGAGCGGGAGGATACGGAGGCGATGACGATGATGATACAAAGTCATTGTTCCCTTTGGACAACCTATTATCGTTGAATTATTATGATAGGATTTGTCCAGATTTTGAGAAAATCGTTGTTACGAAAGTGAGGGAATGGACTAAGAGTGACTCTTCCCTTGGTCCCGCCCTCCTCCGCCTTATCTTCCACGATTGTGGCGTCACGGGATGTGATGCGTCTGTTCTTCTAGACTACGAAGGGACAGAGAGAAGATCTCCGGCTAGCAAAACACTAAGAGGCTTCGAGCTAATTGACGATATCAAGTCCGAGATGGAGAAATCATGCCCCGGCAAAGTATCCTGCGCCGACATCCTAACATCAGCCAGCCGTGCCGCCACCGTCCAACTTGGTGGTCCTTACTGGCCCAACGTCTACGGTCGTCGTGACTCCAAACACTCTTACGCTAGAGACGTAGAGAAAGTCCCTTCAGGCCGTCGTGATGTTACCGCCCTTCTCGAAACGTTTCAGTCATACGGTCTCAACGTCCTCGACCTAGTTGTCCTTTCCGGGGCCCACACCATCGGAAAAGCGTCCTGTGGCACCATCCAGTCGAGGCTTTACAACTACAACGCAACCAGTGGTTCAGATCCTTCGATTGACGCAAAATACGCTGATTACTTGCAACGCAGGTGTCGCTGGGCCTCTGAGACCGTCGATCTCGACCCTGTAACTCCAGCAGTGTTCGATAATCAGTACTACATTAATCTTCAGAAGCATATGGGAGTTTTGTCGACTGATCAGGAGCTTGTTAAGGACCCAAGGACTGCTCCGCTTGTAAAGACTTTCGCAGAGCAATCACCTCAGATATTCAGACAGCAGTTTGCTGTGTCCATGGCTAAGCTGGTCAACGTTGGAGTTCTCACTGGTGAAGATCGTGTCGGAGAGATCAGGAAGGTTTGCAGCAAATCTAACTCCAGAGCTTACTAA

Protein Analysis

349

Amino Acids

38.34

Weight (kDa)

6.46

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 69 - 305 2.6e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 741
AasI GACNNNNNNGTC 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 741
AccB1I GGYRCC 1 cut(s) 662
AccBSI CCGCTC 1 cut(s) 89
AccI GTMKAC 2 cut(s) 495, 854
AciI CCGC 6 cut(s) 89, 249, 259, 456, 570, 893
AclI AACGTT 2 cut(s) 584, 972
AclWI GGATC 1 cut(s) 704
AcoI YGGCCR 3 cut(s) 9, 53, 67
AcuI CTGAAG 2 cut(s) 534, 815
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 818
AfiI CCNNNNNNNGG 2 cut(s) 89, 631
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 82
AleI CACNNNNGTG 1 cut(s) 276
AluBI AGCT 4 cut(s) 370, 868, 964, 1043
AluI AGCT 4 cut(s) 370, 868, 964, 1043
Alw26I GTCTC 4 cut(s) 22, 525, 605, 764
AlwI GGATC 1 cut(s) 704
AoxI GGCC 7 cut(s) 9, 53, 67, 485, 553, 633, 762
ApaI GGGCCC 1 cut(s) 637
ApeKI GCWGC 1 cut(s) 1023
AseI ATTAAT 1 cut(s) 825
Asp700I GAANNNNTTC 1 cut(s) 585
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 7 cut(s) 245, 476, 486, 633, 634, 762, 877
AsuC2I CCSGG 2 cut(s) 411, 631
AsuHPI GGTGA 2 cut(s) 912, 1001
AsuNHI GCTAGC 1 cut(s) 344
AvaII GGWCC 3 cut(s) 245, 476, 877
BaeGI GKGCMC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 637
BauI CACGAG 1 cut(s) 44
BbvI GCAGC 1 cut(s) 1035
BccI CCATC 3 cut(s) 388, 650, 674
BceAI ACGGC 2 cut(s) 435, 540
BciT130I CCWGG 1 cut(s) 84
BciVI GTATCC 2 cut(s) 89, 430
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 2 cut(s) 411, 631
BcoDI GTCTC 4 cut(s) 22, 525, 605, 764
BfaI CTAG 4 cut(s) 311, 345, 528, 617
BfuAI ACCTGC 1 cut(s) 741
BfuI GTATCC 2 cut(s) 89, 430
BglII AGATCT 1 cut(s) 335
BisI GCNGC 2 cut(s) 456, 1024
BlpI GCTNAGC 1 cut(s) 960
BlsI GCNGC 2 cut(s) 457, 1025
BmcAI AGTACT 1 cut(s) 818
Bme1390I CCNGG 3 cut(s) 84, 411, 631
Bme18I GGWCC 3 cut(s) 245, 476, 877
BmgT120I GGNCC 7 cut(s) 245, 476, 486, 633, 634, 762, 877
BmiI GGNNCC 5 cut(s) 247, 634, 635, 664, 879
BmrFI CCNGG 3 cut(s) 84, 411, 631
BmsI GCATC 1 cut(s) 286
BmtI GCTAGC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BpmI CTGGAG 3 cut(s) 105, 780, 1021
Bpu1102I GCTNAGC 1 cut(s) 960
BpuMI CCSGG 2 cut(s) 411, 631
BsaHI GRCGYC 1 cut(s) 282
BsaI GGTCTC 3 cut(s) 22, 605, 764
BsaJI CCNNGG 6 cut(s) 12, 241, 409, 630, 881, 954
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 631
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 4 cut(s) 488, 670, 699, 991
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 6 cut(s) 12, 241, 409, 630, 881, 954
BseGI GGATG 3 cut(s) 296, 432, 666
BseLI CCNNNNNNNGG 2 cut(s) 89, 631
BseMII CTCAG 3 cut(s) 33, 759, 938
BseNI ACTGG 4 cut(s) 488, 670, 699, 991
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 1 cut(s) 1035
BseYI CCCAGC 1 cut(s) 759
Bsh1285I CGRYCG 1 cut(s) 502
BshFI GGCC 7 cut(s) 11, 55, 69, 487, 555, 635, 764
BshNI GGYRCC 1 cut(s) 662
BsiEI CGRYCG 1 cut(s) 502
BsiSI CCGG 4 cut(s) 56, 341, 411, 630
BslFI GGGAC 3 cut(s) 231, 337, 530
BslI CCNNNNNNNGG 2 cut(s) 89, 631
BsmAI GTCTC 4 cut(s) 22, 525, 605, 764
BsmBI CGTCTC 1 cut(s) 525
BsmFI GGGAC 3 cut(s) 231, 337, 530
BsnI GGCC 7 cut(s) 11, 55, 69, 487, 555, 635, 764
Bso31I GGTCTC 3 cut(s) 22, 605, 764
Bsp120I GGGCCC 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 6 cut(s) 335, 709, 778, 859, 994, 1008
Bsp1720I GCTNAGC 1 cut(s) 960
Bsp19I CCATGG 1 cut(s) 954
BspACI CCGC 6 cut(s) 89, 249, 259, 456, 570, 893
BspANI GGCC 7 cut(s) 11, 55, 69, 487, 555, 635, 764
BspCNI CTCAG 3 cut(s) 32, 760, 937
BspLI GGNNCC 5 cut(s) 247, 634, 635, 664, 879
BspMI ACCTGC 1 cut(s) 741
BspOI GCTAGC 1 cut(s) 348
BspPI GGATC 1 cut(s) 704
BspT107I GGYRCC 1 cut(s) 662
BspTNI GGTCTC 3 cut(s) 22, 605, 764
BsrBI CCGCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 4 cut(s) 488, 670, 699, 991
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 6 cut(s) 12, 241, 409, 630, 881, 954
BssMI GATC 6 cut(s) 335, 709, 778, 859, 994, 1008
BssNI GRCGYC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 44
BssT1I CCWWGG 3 cut(s) 241, 881, 954
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 4 cut(s) 463, 500, 599, 775
Bst6I CTCTTC 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 67, 346, 448
BstDEI CTNAG 6 cut(s) 19, 225, 356, 768, 924, 960
BstDSI CCRYGG 2 cut(s) 12, 954
BstF5I GGATG 3 cut(s) 296, 432, 666
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 6 cut(s) 338, 712, 781, 862, 997, 1011
BstMAI GTCTC 4 cut(s) 22, 525, 605, 764
BstMBI GATC 6 cut(s) 335, 709, 778, 859, 994, 1008
BstMCI CGRYCG 1 cut(s) 502
BstMWI GCNNNNNNNGC 3 cut(s) 452, 731, 756
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 3 cut(s) 82, 409, 629
BstSLI GKGCMC 1 cut(s) 637
BstV1I GCAGC 1 cut(s) 1035
BstX2I RGATCY 2 cut(s) 335, 709
BstXI CCANNNNNNTGG 2 cut(s) 278, 473
BstYI RGATCY 2 cut(s) 335, 709
BsuI GTATCC 2 cut(s) 89, 430
BsuRI GGCC 7 cut(s) 11, 55, 69, 487, 555, 635, 764
BtgI CCRYGG 2 cut(s) 12, 954
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 3 cut(s) 296, 432, 666
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 3 cut(s) 706, 807, 984
BveI ACCTGC 1 cut(s) 741
Cac8I GCNNGC 3 cut(s) 67, 346, 448
CfoI GCGC 1 cut(s) 428
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 7 cut(s) 245, 476, 486, 633, 634, 762, 877
CseI GACGC 4 cut(s) 271, 288, 642, 731
Csp6I GTAC 1 cut(s) 817
CviAII CATG 2 cut(s) 405, 955
CviQI GTAC 1 cut(s) 817
DdeI CTNAG 6 cut(s) 19, 225, 356, 768, 924, 960
DpnI GATC 6 cut(s) 337, 711, 780, 861, 996, 1010
DpnII GATC 6 cut(s) 335, 709, 778, 859, 994, 1008
DrdI GACNNNNNNGTC 1 cut(s) 620
DseDI GACNNNNNNGTC 1 cut(s) 620
EaeI YGGCCR 3 cut(s) 9, 53, 67
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 3 cut(s) 241, 881, 954
Eco24I GRGCYC 1 cut(s) 637
Eco31I GGTCTC 3 cut(s) 22, 605, 764
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 3 cut(s) 245, 476, 877
Eco57I CTGAAG 2 cut(s) 534, 815
EcoO109I RGGNCCY 2 cut(s) 633, 877
EcoRII CCWGG 1 cut(s) 82
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 3 cut(s) 241, 881, 954
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 3 cut(s) 241, 881, 954
Esp3I CGTCTC 1 cut(s) 525
FaeI CATG 2 cut(s) 408, 958
FaiI YATR 7 cut(s) 32, 168, 406, 595, 840, 842, 956
FaqI GGGAC 3 cut(s) 231, 337, 530
FatI CATG 2 cut(s) 404, 954
FauI CCCGC 2 cut(s) 82, 256
FauNDI CATATG 1 cut(s) 840
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 2 cut(s) 495, 854
Fnu4HI GCNGC 2 cut(s) 456, 1024
FokI GGATG 3 cut(s) 303, 419, 653
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 2 cut(s) 456, 1024
FspBI CTAG 4 cut(s) 311, 345, 528, 617
GlaI GCGC 1 cut(s) 427
GluI GCNGC 2 cut(s) 456, 1024
GsaI CCCAGC 1 cut(s) 763
GsuI CTGGAG 3 cut(s) 105, 780, 1021
HaeIII GGCC 7 cut(s) 11, 55, 69, 487, 555, 635, 764
HapII CCGG 4 cut(s) 56, 341, 411, 630
HgaI GACGC 4 cut(s) 271, 288, 642, 731
HhaI GCGC 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 2 cut(s) 408, 958
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HincII GTYRAC 2 cut(s) 855, 970
HindII GTYRAC 2 cut(s) 855, 970
HinfI GANTC 2 cut(s) 233, 509
HpaII CCGG 4 cut(s) 56, 341, 411, 630
HphI GGTGA 2 cut(s) 912, 1001
Hpy166II GTNNAC 3 cut(s) 496, 855, 970
Hpy188I TCNGA 9 cut(s) 38, 391, 647, 709, 769, 834, 927, 935, 1004
Hpy188III TCNNGA 9 cut(s) 182, 311, 506, 560, 578, 782, 863, 1012, 1038
Hpy8I GTNNAC 3 cut(s) 496, 855, 970
Hpy99I CGWCG 3 cut(s) 507, 561, 779
HpyAV CCTTC 5 cut(s) 314, 558, 584, 723, 1009
HpyCH4III ACNGT 4 cut(s) 463, 500, 599, 775
HpyCH4IV ACGT 5 cut(s) 492, 534, 584, 606, 972
HpyCH4V TGCA 2 cut(s) 745, 1023
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 731, 756
HpyF3I CTNAG 6 cut(s) 19, 225, 356, 768, 924, 960
HpySE526I ACGT 5 cut(s) 492, 534, 584, 606, 972
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 2 cut(s) 408, 958
HspAI GCGC 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 6 cut(s) 335, 709, 778, 859, 994, 1008
LmnI GCTCC 3 cut(s) 86, 865, 895
Lsp1109I GCAGC 1 cut(s) 1035
LweI GCATC 1 cut(s) 286
MaeI CTAG 4 cut(s) 311, 345, 528, 617
MaeII ACGT 5 cut(s) 492, 534, 584, 606, 972
MaeIII GTNAC 6 cut(s) 202, 230, 283, 506, 565, 790
MalI GATC 6 cut(s) 337, 711, 780, 861, 996, 1010
MbiI CCGCTC 1 cut(s) 89
MboI GATC 6 cut(s) 335, 709, 778, 859, 994, 1008
MboII GAAGA 6 cut(s) 228, 259, 299, 345, 821, 1004
MflI RGATCY 2 cut(s) 335, 709
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 2 cut(s) 160, 372
MlyI GAGTC 2 cut(s) 227, 503
MmeI TCCRAC 3 cut(s) 490, 955, 982
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 2 cut(s) 825, 873
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 4 cut(s) 56, 341, 411, 630
MspR9I CCNGG 3 cut(s) 84, 411, 631
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 452, 731, 756
NciI CCSGG 2 cut(s) 411, 631
NcoI CCATGG 1 cut(s) 954
NdeI CATATG 1 cut(s) 840
NdeII GATC 6 cut(s) 335, 709, 778, 859, 994, 1008
NheI GCTAGC 1 cut(s) 344
NlaIII CATG 2 cut(s) 408, 958
NlaIV GGNNCC 5 cut(s) 247, 634, 635, 664, 879
NmuCI GTSAC 3 cut(s) 230, 283, 506
OliI CACNNNNGTG 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 741
PcsI WCGNNNNNNNCGW 4 cut(s) 42, 279, 531, 603
PdmI GAANNNNTTC 1 cut(s) 585
PkrI GCNGC 2 cut(s) 457, 1025
PleI GAGTC 2 cut(s) 227, 503
PpsI GAGTC 2 cut(s) 227, 503
PpuMI RGGWCCY 1 cut(s) 877
PshBI ATTAAT 1 cut(s) 825
Psp1406I AACGTT 2 cut(s) 584, 972
Psp5II RGGWCCY 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 759
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 5 cut(s) 247, 634, 635, 664, 879
PspOMI GGGCCC 1 cut(s) 633
PspPI GGNCC 7 cut(s) 245, 476, 486, 633, 634, 762, 877
PspPPI RGGWCCY 1 cut(s) 877
PsuI RGATCY 2 cut(s) 335, 709
RsaI GTAC 1 cut(s) 818
RsaNI GTAC 1 cut(s) 817
RseI CAYNNNNRTG 1 cut(s) 276
SalI GTCGAC 1 cut(s) 853
SaqAI TTAA 2 cut(s) 825, 873
SatI GCNGC 2 cut(s) 456, 1024
Sau3AI GATC 6 cut(s) 335, 709, 778, 859, 994, 1008
Sau96I GGNCC 7 cut(s) 245, 476, 486, 633, 634, 762, 877
ScaI AGTACT 1 cut(s) 818
SchI GAGTC 2 cut(s) 227, 503
ScrFI CCNGG 3 cut(s) 84, 411, 631
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 1 cut(s) 286
SinI GGWCC 3 cut(s) 245, 476, 877
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 2 cut(s) 160, 372
SsiI CCGC 6 cut(s) 89, 249, 259, 456, 570, 893
SspMI CTAG 4 cut(s) 311, 345, 528, 617
StyD4I CCNGG 3 cut(s) 82, 409, 629
StyI CCWWGG 3 cut(s) 241, 881, 954
TaaI ACNGT 4 cut(s) 463, 500, 599, 775
TaiI ACGT 5 cut(s) 495, 537, 587, 609, 975
TaqI TCGA 9 cut(s) 366, 579, 612, 674, 716, 777, 783, 807, 854
TasI AATT 2 cut(s) 160, 372
TatI WGTACW 1 cut(s) 816
TauI GCSGC 1 cut(s) 458
Tru1I TTAA 2 cut(s) 825, 873
Tru9I TTAA 2 cut(s) 825, 873
TscAI CASTG 3 cut(s) 706, 807, 991
TseFI GTSAC 3 cut(s) 230, 283, 506
TseI GCWGC 1 cut(s) 1023
Tsp45I GTSAC 3 cut(s) 230, 283, 506
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 3 cut(s) 706, 807, 991
VpaK11BI GGWCC 3 cut(s) 245, 476, 877
VspI ATTAAT 1 cut(s) 825
XbaI TCTAGA 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 961
XmiI GTMKAC 2 cut(s) 495, 854
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 4 cut(s) 311, 345, 528, 617
ZrmI AGTACT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.