Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Reverse (-)

31634635 .. 31636205

Gene Structure 1571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1218200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAAGTTGTGCAGTTCTACACTGTCTGTTGTTCTTGTTCTGTTGGAGCTGTTCATGATCGATGTTGTATCATCGACTAAGTTACCTGTAACGGCAGCATCTCTCAATGTAAAAAAACCTCAGGCCAAAGCTGTTCGCGCTGAGGATCTTCTGTCATTCAATCACTATGTTAAAACATGTCCGCAAGCTGAGGGAATCATTCAACAAAAAGTCGGAGATTGGATTCAGAAAGATTTCACTTTGGCTGCTAGCATCATTCGCTTACACTTCCATGACTGTGTTGTGAGAGGATGCGATGCATCAATTCTCCTTAACCATCAAGCGAACGAGAGGAGGGCTTTTGCCAGCAGGACACTCAGAGGTTTTGAAGTAATTGACGACATCAAAGCGGAGCTTGAGAGGCAGTGTCCTAAAACCGTCTCATGTGCTGACATTCTCACTGCCGCAACCAGAGATGCCACAATCATAGCTGGTGGTCCATTTTGGGAAGTCCCCTTCGGACGCAAAGATGGTAAAATTTCAATCCTCAAGGAAGCTGACATGGTTCCTCAGGGACAGGAGAACATCACTCAATTGATCAATTTTTTCCAAGCGCGCGGCTTGAACATGCTTGATTTGGTCACACTCTCAGGGGCACACACCATGGGCAGAAGTTCTTGCCACGCCTTCAAGCACAGGCTCTCAAATTTCAATGGAACCAGAAAGCCTGACCCTTCACTTAACTCTATGTACTTGAATAACTTCTTGAAGAAGAAATGCAAAAATGACTTGGACTTGGTTTATCTCGACGCCATAACTCCAAAGACATTCGATCCAATGTACTACTCGAATCTCAACAAGAAGTTGGGATTGTTGTCAACTGATCAGCTGCTCAAGTCGGACAAGAGAACCGGTCCTTTTGTTACTGCATTGGCGTCTCAGCCGTCACTTTTCGAAAGCCAGTTTTCGGTGTCAATGGTGAAGCTTGGAAATGTGCAAGTTCTCACAAGACCTAATGAAGGTGAAATCCGAGTGAACTGCAATTTTGTCAATGCTAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

348

Amino Acids

38.6

Weight (kDa)

9.21

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	68 - 306	2.3e-76	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	138, 595, 597
AciI	CCGC	4 cut(s)	182, 389, 444, 597
AclWI	GGATC	2 cut(s)	153, 806
AcsI	RAATTY	2 cut(s)	516, 685
AcyI	GRCGYC	2 cut(s)	789, 914
AfaI	GTAC	2 cut(s)	731, 821
AfiI	CCNNNNNNNGG	2 cut(s)	946, 998
AflIII	ACRYGT	1 cut(s)	176
AgeI	ACCGGT	1 cut(s)	890
AgsI	TTSAA	9 cut(s)	160, 203, 368, 522, 604, 670, 691, 736, 748
AluBI	AGCT	8 cut(s)	49, 131, 188, 394, 470, 536, 868, 964
AluI	AGCT	8 cut(s)	49, 131, 188, 394, 470, 536, 868, 964
Alw26I	GTCTC	2 cut(s)	424, 921
AlwI	GGATC	2 cut(s)	153, 806
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	3 cut(s)	95, 245, 868
ApoI	RAATTY	2 cut(s)	516, 685
AsiGI	ACCGGT	1 cut(s)	890
Asp700I	GAANNNNTTC	2 cut(s)	233, 740
AspLEI	GCGC	3 cut(s)	140, 595, 597
AspS9I	GGNCC	2 cut(s)	476, 893
AsuHPI	GGTGA	2 cut(s)	970, 1013
AsuII	TTCGAA	1 cut(s)	933
AsuNHI	GCTAGC	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	476, 893
AxyI	CCTNAGG	2 cut(s)	120, 549
BaeGI	GKGCMC	1 cut(s)	637
BbvCI	CCTCAGC	2 cut(s)	141, 189
BbvI	GCAGC	3 cut(s)	107, 232, 855
BccI	CCATC	2 cut(s)	324, 503
BceAI	ACGGC	2 cut(s)	108, 907
BcgI	CGANNNNNNTGC	2 cut(s)	999, 1033
BclI	TGATCA	2 cut(s)	576, 862
BcoDI	GTCTC	2 cut(s)	424, 921
BfaI	CTAG	1 cut(s)	249
BisI	GCNGC	5 cut(s)	96, 246, 444, 598, 869
BlsI	GCNGC	5 cut(s)	97, 247, 445, 599, 870
Bme18I	GGWCC	2 cut(s)	476, 893
BmgT120I	GGNCC	2 cut(s)	476, 893
BmiI	GGNNCC	2 cut(s)	546, 697
BmsI	GCATC	6 cut(s)	107, 261, 281, 286, 308, 445
BmtI	GCTAGC	1 cut(s)	252
Bpu10I	CCTNAGC	2 cut(s)	141, 189
Bpu14I	TTCGAA	1 cut(s)	933
BpuEI	CTTGAG	3 cut(s)	416, 512, 857
Bsa29I	ATCGAT	1 cut(s)	60
BsaHI	GRCGYC	2 cut(s)	789, 914
BsaJI	CCNNGG	1 cut(s)	642
BsaWI	WCCGGW	1 cut(s)	890
Bsc4I	CCNNNNNNNGG	2 cut(s)	946, 998
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	1 cut(s)	940
Bse21I	CCTNAGG	2 cut(s)	120, 549
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	2 cut(s)	946, 998
BseMII	CTCAG	7 cut(s)	132, 134, 180, 370, 563, 642, 932
BseNI	ACTGG	1 cut(s)	940
BsePI	GCGCGC	1 cut(s)	593
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	3 cut(s)	107, 232, 855
BsgI	GTGCAG	1 cut(s)	31
Bsh1236I	CGCG	3 cut(s)	138, 595, 597
BshFI	GGCC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	890
BshVI	ATCGAT	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	891
BslFI	GGGAC	2 cut(s)	476, 567
BslI	CCNNNNNNNGG	2 cut(s)	946, 998
BsmAI	GTCTC	2 cut(s)	424, 921
BsmBI	CGTCTC	2 cut(s)	424, 921
BsmFI	GGGAC	2 cut(s)	476, 567
BsnI	GGCC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	933
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	5 cut(s)	57, 145, 576, 811, 862
Bsp19I	CCATGG	1 cut(s)	642
BspACI	CCGC	4 cut(s)	182, 389, 444, 597
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	7 cut(s)	133, 133, 181, 369, 562, 641, 931
BspDI	ATCGAT	1 cut(s)	60
BspFNI	CGCG	3 cut(s)	138, 595, 597
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	546, 697
BspOI	GCTAGC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	153, 806
BspT104I	TTCGAA	1 cut(s)	933
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	1 cut(s)	940
BssAI	RCCGGY	1 cut(s)	890
BssECI	CCNNGG	1 cut(s)	642
BssHII	GCGCGC	1 cut(s)	593
BssMI	GATC	5 cut(s)	57, 145, 576, 811, 862
BssNI	GRCGYC	2 cut(s)	789, 914
BssT1I	CCWWGG	1 cut(s)	642
Bst4CI	ACNGT	3 cut(s)	24, 278, 418
BstACI	GRCGYC	2 cut(s)	789, 914
BstBI	TTCGAA	1 cut(s)	933
BstC8I	GCNNGC	4 cut(s)	186, 250, 346, 595
BstDEI	CTNAG	8 cut(s)	78, 120, 141, 189, 356, 549, 628, 918
BstDSI	CCRYGG	1 cut(s)	642
BstENI	CCTNNNNNAGG	1 cut(s)	996
BstF5I	GGATG	1 cut(s)	296
BstFNI	CGCG	3 cut(s)	138, 595, 597
BstHHI	GCGC	3 cut(s)	140, 595, 597
BstKTI	GATC	5 cut(s)	60, 148, 579, 814, 865
BstMAI	GTCTC	2 cut(s)	424, 921
BstMBI	GATC	5 cut(s)	57, 145, 576, 811, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 258, 400
BstNSI	RCATGY	2 cut(s)	180, 610
BstSLI	GKGCMC	1 cut(s)	637
BstUI	CGCG	3 cut(s)	138, 595, 597
BstV1I	GCAGC	3 cut(s)	107, 232, 855
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	60
Bsu36I	CCTNAGG	2 cut(s)	120, 549
BsuRI	GGCC	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	642
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	296
BtsI	GCAGTG	2 cut(s)	410, 438
BtsIMutI	CAGTG	3 cut(s)	20, 410, 438
Cac8I	GCNNGC	4 cut(s)	186, 250, 346, 595
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	3 cut(s)	140, 595, 597
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	2 cut(s)	476, 893
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	3 cut(s)	510, 797, 903
Csp6I	GTAC	2 cut(s)	730, 820
CspAI	ACCGGT	1 cut(s)	890
CviAII	CATG	7 cut(s)	55, 177, 272, 423, 541, 607, 643
CviQI	GTAC	2 cut(s)	730, 820
DdeI	CTNAG	8 cut(s)	78, 120, 141, 189, 356, 549, 628, 918
DpnI	GATC	5 cut(s)	59, 147, 578, 813, 864
DpnII	GATC	5 cut(s)	57, 145, 576, 811, 862
Eco130I	CCWWGG	1 cut(s)	642
Eco47I	GGWCC	2 cut(s)	476, 893
Eco81I	CCTNAGG	2 cut(s)	120, 549
EcoNI	CCTNNNNNAGG	1 cut(s)	996
EcoT14I	CCWWGG	1 cut(s)	642
EcoT22I	ATGCAT	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	642
Esp3I	CGTCTC	2 cut(s)	424, 921
FaeI	CATG	7 cut(s)	58, 180, 275, 426, 544, 610, 646
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	2 cut(s)	476, 567
FatI	CATG	7 cut(s)	54, 176, 271, 422, 540, 606, 642
FbaI	TGATCA	2 cut(s)	576, 862
Fnu4HI	GCNGC	5 cut(s)	96, 246, 444, 598, 869
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	5 cut(s)	96, 246, 444, 598, 869
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	3 cut(s)	139, 594, 596
GluI	GCNGC	5 cut(s)	96, 246, 444, 598, 869
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	891
HgaI	GACGC	3 cut(s)	510, 797, 903
HhaI	GCGC	3 cut(s)	140, 595, 597
Hin1I	GRCGYC	2 cut(s)	789, 914
Hin1II	CATG	7 cut(s)	58, 180, 275, 426, 544, 610, 646
Hin6I	GCGC	3 cut(s)	138, 593, 595
HinP1I	GCGC	3 cut(s)	138, 593, 595
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	3 cut(s)	195, 223, 829
HpaII	CCGG	1 cut(s)	891
HphI	GGTGA	2 cut(s)	970, 1013
Hpy166II	GTNNAC	2 cut(s)	858, 1015
Hpy188I	TCNGA	6 cut(s)	215, 228, 359, 500, 880, 1010
Hpy188III	TCNNGA	3 cut(s)	55, 745, 785
Hpy8I	GTNNAC	2 cut(s)	858, 1015
Hpy99I	CGWCG	1 cut(s)	791
HpyAV	CCTTC	4 cut(s)	505, 676, 723, 992
HpyCH4III	ACNGT	3 cut(s)	24, 278, 418
HpyCH4V	TGCA	6 cut(s)	12, 299, 759, 908, 976, 1020
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 258, 400
HpyF3I	CTNAG	8 cut(s)	78, 120, 141, 189, 356, 549, 628, 918
Hsp92I	GRCGYC	2 cut(s)	789, 914
Hsp92II	CATG	7 cut(s)	58, 180, 275, 426, 544, 610, 646
HspAI	GCGC	3 cut(s)	138, 593, 595
Ksp22I	TGATCA	2 cut(s)	576, 862
Kzo9I	GATC	5 cut(s)	57, 145, 576, 811, 862
LmnI	GCTCC	2 cut(s)	46, 391
Lsp1109I	GCAGC	3 cut(s)	107, 232, 855
LweI	GCATC	6 cut(s)	107, 261, 281, 286, 308, 445
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	5 cut(s)	81, 88, 619, 901, 924
MalI	GATC	5 cut(s)	59, 147, 578, 813, 864
MboI	GATC	5 cut(s)	57, 145, 576, 811, 862
MboII	GAAGA	3 cut(s)	140, 760, 763
MfeI	CAATTG	1 cut(s)	572
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	7 cut(s)	303, 372, 516, 572, 580, 685, 1021
MmeI	TCCRAC	3 cut(s)	24, 193, 858
Mph1103I	ATGCAT	1 cut(s)	301
MroXI	GAANNNNTTC	2 cut(s)	233, 740
MseI	TTAA	3 cut(s)	171, 312, 720
MslI	CAYNNNNRTG	2 cut(s)	270, 276
MspA1I	CMGCKG	1 cut(s)	868
MspI	CCGG	1 cut(s)	891
MunI	CAATTG	1 cut(s)	572
MvnI	CGCG	3 cut(s)	138, 595, 597
MwoI	GCNNNNNNNGC	3 cut(s)	137, 258, 400
NcoI	CCATGG	1 cut(s)	642
NdeII	GATC	5 cut(s)	57, 145, 576, 811, 862
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	7 cut(s)	58, 180, 275, 426, 544, 610, 646
NlaIV	GGNNCC	2 cut(s)	546, 697
NmuCI	GTSAC	2 cut(s)	619, 924
NsiI	ATGCAT	1 cut(s)	301
NspI	RCATGY	2 cut(s)	180, 610
NspV	TTCGAA	1 cut(s)	933
PagI	TCATGA	1 cut(s)	54
PauI	GCGCGC	1 cut(s)	593
PciI	ACATGT	1 cut(s)	176
PdmI	GAANNNNTTC	2 cut(s)	233, 740
PfeI	GAWTC	3 cut(s)	195, 223, 829
PinAI	ACCGGT	1 cut(s)	890
PkrI	GCNGC	5 cut(s)	97, 247, 445, 599, 870
PscI	ACATGT	1 cut(s)	176
PspN4I	GGNNCC	2 cut(s)	546, 697
PspPI	GGNCC	2 cut(s)	476, 893
PsuI	RGATCY	1 cut(s)	145
PteI	GCGCGC	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	868
RsaI	GTAC	2 cut(s)	731, 821
RsaNI	GTAC	2 cut(s)	730, 820
RseI	CAYNNNNRTG	2 cut(s)	270, 276
SaqAI	TTAA	3 cut(s)	171, 312, 720
SatI	GCNGC	5 cut(s)	96, 246, 444, 598, 869
Sau3AI	GATC	5 cut(s)	57, 145, 576, 811, 862
Sau96I	GGNCC	2 cut(s)	476, 893
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	6 cut(s)	107, 261, 281, 286, 308, 445
SfuI	TTCGAA	1 cut(s)	933
SinI	GGWCC	2 cut(s)	476, 893
SmiMI	CAYNNNNRTG	2 cut(s)	270, 276
SmlI	CTYRAG	3 cut(s)	395, 527, 872
SmoI	CTYRAG	3 cut(s)	395, 527, 872
Sse9I	AATT	7 cut(s)	303, 372, 516, 572, 580, 685, 1021
SsiI	CCGC	4 cut(s)	182, 389, 444, 597
SspMI	CTAG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	3 cut(s)	24, 278, 418
TaqI	TCGA	6 cut(s)	60, 74, 786, 810, 827, 933
TasI	AATT	7 cut(s)	303, 372, 516, 572, 580, 685, 1021
TatI	WGTACW	2 cut(s)	729, 819
TauI	GCSGC	2 cut(s)	446, 600
TfiI	GAWTC	3 cut(s)	195, 223, 829
Tru1I	TTAA	3 cut(s)	171, 312, 720
Tru9I	TTAA	3 cut(s)	171, 312, 720
TscAI	CASTG	3 cut(s)	27, 410, 445
TseFI	GTSAC	2 cut(s)	619, 924
TseI	GCWGC	3 cut(s)	95, 245, 868
Tsp45I	GTSAC	2 cut(s)	619, 924
TspDTI	ATGAA	3 cut(s)	17, 43, 1011
TspRI	CASTG	3 cut(s)	27, 410, 445
VpaK11BI	GGWCC	2 cut(s)	476, 893
XagI	CCTNNNNNAGG	1 cut(s)	996
XapI	RAATTY	2 cut(s)	516, 685
XceI	RCATGY	2 cut(s)	180, 610
XmnI	GAANNNNTTC	2 cut(s)	233, 740
XspI	CTAG	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.