Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Forward (+)

8360554 .. 8362010

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAAGATGGGGGTTTCTATATTATTTGCTCTCCTGGTTCTCACATTGGAGTTGTTCATGAGTATCAATGCCTCAGCTGCTAAACCCGTCAAACAGGTGCCCGCTGAAGCTCTTTTGTCTTTCCGTCATTACATGAAAACTTGCCCACAAGCGGAGGGCATCATTCAGCAAAAAGTCGTAGATTGGCTCGAGAAGGATTTCACTTTGGCTGCTGCCATCATCCGCTTGCACTTCCATGACTGTGTAGTGAGGGGTTGTGATGCATCAATTTTGCTTAACCATCCGGGGAGCGAGAGAAGAGCTTTTGCAAGCTATACACTGAGAGGTTTTCAAGTAATGGATGACATCAAGGCGGAGCTGGAGAGACAGTGCCCTAAAACTGTTTCCTGCGCGGACATTCTCACCGCTGCAGCAAGAGACGCCACCATCATGGCCGGAGGTCCGTTTTGGGAAGTACCATTTGGGCGTAGAGATGGGAAGATTTCAATTGCCAGAGAAGCAGATGAGATAGTTCCTCAGGGTCATGAGAATATCACTGCACTGATCCAACTATTTAATGAAAAAGGCTTGAATATGCTTGACTTGGTTACACTCTCAGGAGCACACACCATTGGTAGAAGTACTTGCTTTGCCTTCAAGCAAAGGCTCGCAAACTTCAATGGAACCAGAAAGCCTGACCCTTCACTAAATTCTATGTACTTGAACTTCTTCTTGAAGAGGAATTGCAGAAAAGACTCGGACTTTGTTTTTCTTGATGCCATAACCCCGAAGACATTTGACACACAATACTACACGAATCTTCACAAGAAGTTGGGGTTGTTATCCACGGATCAGTTGCTCAAGTCGGATGTGAGAACCAGTCCATTTGTTGATGCATTAGGATCTCAGCCTTCCCTTTTCGAGAGCCAGTTTGCAGCATCCATGGTGAAACTTGGCAATGTTCAAGTTCTTACAAGACCAAATGAAGGCGAAATCCGAGTGAACTGCAATTTTGTCAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

335

Amino Acids

37.2

Weight (kDa)

8.57

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	56 - 293	6.4e-77	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccII	CGCG	1 cut(s)	392
AciI	CCGC	6 cut(s)	102, 152, 223, 353, 392, 405
AclWI	GGATC	3 cut(s)	538, 837, 889
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	688
AcuI	CTGAAG	1 cut(s)	126
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	3 cut(s)	456, 622, 698
AfiI	CCNNNNNNNGG	2 cut(s)	151, 965
AgsI	TTSAA	8 cut(s)	332, 486, 571, 637, 658, 703, 715, 944
AjnI	CCWGG	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AluBI	AGCT	5 cut(s)	77, 110, 302, 312, 358
AluI	AGCT	5 cut(s)	77, 110, 302, 312, 358
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	2 cut(s)	358, 411
AlwI	GGATC	3 cut(s)	538, 837, 889
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	6 cut(s)	77, 209, 212, 407, 410, 914
ApoI	RAATTY	1 cut(s)	688
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
Asp700I	GAANNNNTTC	2 cut(s)	197, 707
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	394, 937
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	440
AxyI	CCTNAGG	1 cut(s)	516
BaeGI	GKGCMC	2 cut(s)	102, 374
BanI	GGYRCC	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	689, 721
BbsI	GAAGAC	1 cut(s)	776
Bbv12I	GWGCWC	1 cut(s)	604
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	6 cut(s)	64, 196, 199, 394, 422, 926
BccI	CCATC	4 cut(s)	224, 288, 434, 467
BcgI	CGANNNNNNTGC	2 cut(s)	966, 1000
BciT130I	CCWGG	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	358, 411
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	6 cut(s)	78, 210, 213, 408, 411, 915
BlsI	GCNGC	6 cut(s)	79, 211, 214, 409, 412, 916
BmcAI	AGTACT	1 cut(s)	622
Bme1390I	CCNGG	2 cut(s)	35, 285
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	99, 664
BmrFI	CCNGG	2 cut(s)	35, 285
BmsI	GCATC	6 cut(s)	168, 250, 272, 745, 862, 926
BpiI	GAAGAC	1 cut(s)	776
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	284, 825, 921
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 965
Bse1I	ACTGG	2 cut(s)	858, 907
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	943
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	284, 825, 921
BseGI	GGATG	5 cut(s)	219, 280, 346, 853, 917
BseLI	CCNNNNNNNGG	2 cut(s)	151, 965
BseMI	GCAATG	1 cut(s)	943
BseMII	CTCAG	5 cut(s)	87, 311, 530, 609, 899
BseNI	ACTGG	2 cut(s)	858, 907
BseSI	GKGCMC	2 cut(s)	102, 374
BseXI	GCAGC	6 cut(s)	64, 196, 199, 394, 422, 926
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	434
BshNI	GGYRCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	284, 435
BslI	CCNNNNNNNGG	2 cut(s)	151, 965
BsmAI	GTCTC	2 cut(s)	358, 411
BsmBI	CGTCTC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	102, 374, 604
Bsp143I	GATC	3 cut(s)	543, 829, 881
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	6 cut(s)	102, 152, 223, 353, 392, 405
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	5 cut(s)	86, 312, 529, 608, 898
BspFNI	CGCG	1 cut(s)	392
BspHI	TCATGA	2 cut(s)	57, 523
BspLI	GGNNCC	2 cut(s)	99, 664
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	3 cut(s)	538, 837, 889
BspQI	GCTCTTC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	943
BsrI	ACTGG	2 cut(s)	858, 907
BssECI	CCNNGG	3 cut(s)	284, 825, 921
BssMI	GATC	3 cut(s)	543, 829, 881
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	921
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	3 cut(s)	242, 369, 382
Bst6I	CTCTTC	2 cut(s)	292, 710
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	4 cut(s)	102, 227, 310, 648
BstDEI	CTNAG	5 cut(s)	73, 320, 516, 595, 885
BstDSI	CCRYGG	2 cut(s)	825, 921
BstF5I	GGATG	5 cut(s)	219, 280, 346, 853, 917
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	3 cut(s)	546, 832, 884
BstMAI	GTCTC	2 cut(s)	358, 411
BstMBI	GATC	3 cut(s)	543, 829, 881
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 419, 497
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	33, 283
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	2 cut(s)	102, 374
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	6 cut(s)	64, 196, 199, 394, 422, 926
BstV2I	GAAGAC	1 cut(s)	776
BstX2I	RGATCY	1 cut(s)	881
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	881
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	434
BtgI	CCRYGG	2 cut(s)	825, 921
BtsCI	GGATG	5 cut(s)	219, 280, 346, 853, 917
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	4 cut(s)	317, 374, 534, 539
Cac8I	GCNNGC	4 cut(s)	102, 227, 310, 648
CciI	TCATGA	2 cut(s)	57, 523
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	440
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	3 cut(s)	455, 621, 697
CviAII	CATG	6 cut(s)	58, 133, 236, 430, 524, 922
CviQI	GTAC	3 cut(s)	455, 621, 697
DdeI	CTNAG	5 cut(s)	73, 320, 516, 595, 885
DpnI	GATC	3 cut(s)	545, 831, 883
DpnII	GATC	3 cut(s)	543, 829, 881
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	2 cut(s)	292, 710
EarI	CTCTTC	2 cut(s)	292, 710
EciI	GGCGGA	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	921
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	921
EcoT22I	ATGCAT	2 cut(s)	265, 877
ErhI	CCWWGG	1 cut(s)	921
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	6 cut(s)	61, 136, 239, 433, 527, 925
FatI	CATG	6 cut(s)	57, 132, 235, 429, 523, 921
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	6 cut(s)	78, 210, 213, 408, 411, 915
FokI	GGATG	5 cut(s)	206, 267, 353, 860, 904
Fsp4HI	GCNGC	6 cut(s)	78, 210, 213, 408, 411, 915
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	6 cut(s)	78, 210, 213, 408, 411, 915
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	2 cut(s)	284, 435
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	6 cut(s)	61, 136, 239, 433, 527, 925
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HinfI	GANTC	2 cut(s)	734, 796
HpaII	CCGG	2 cut(s)	284, 435
HphI	GGTGA	2 cut(s)	394, 937
Hpy166II	GTNNAC	1 cut(s)	982
Hpy188I	TCNGA	3 cut(s)	739, 847, 977
Hpy188III	TCNNGA	7 cut(s)	58, 190, 524, 597, 712, 752, 901
Hpy8I	GTNNAC	1 cut(s)	982
HpyAV	CCTTC	5 cut(s)	187, 643, 690, 900, 959
HpyCH4III	ACNGT	3 cut(s)	242, 369, 382
HpyCH4V	TGCA	9 cut(s)	229, 263, 308, 410, 539, 726, 875, 914, 987
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 419, 497
HpyF3I	CTNAG	5 cut(s)	73, 320, 516, 595, 885
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	6 cut(s)	61, 136, 239, 433, 527, 925
HspAI	GCGC	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	543, 829, 881
LguI	GCTCTTC	1 cut(s)	292
LmnI	GCTCC	3 cut(s)	288, 355, 599
Lsp1109I	GCAGC	6 cut(s)	64, 196, 199, 394, 422, 926
LweI	GCATC	6 cut(s)	168, 250, 272, 745, 862, 926
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	3 cut(s)	545, 831, 883
MboI	GATC	3 cut(s)	543, 829, 881
MboII	GAAGA	7 cut(s)	16, 309, 490, 700, 727, 781, 791
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	881
MhlI	GDGCHC	3 cut(s)	102, 374, 604
MluCI	AATT	5 cut(s)	267, 486, 688, 721, 988
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	2 cut(s)	571, 825
MnlI	CCTC	7 cut(s)	82, 148, 243, 317, 431, 525, 711
Mph1103I	ATGCAT	2 cut(s)	265, 877
MroXI	GAANNNNTTC	2 cut(s)	197, 707
MseI	TTAA	3 cut(s)	276, 555, 1003
MslI	CAYNNNNRTG	3 cut(s)	234, 240, 428
MspA1I	CMGCKG	3 cut(s)	77, 104, 407
MspI	CCGG	2 cut(s)	284, 435
MspR9I	CCNGG	2 cut(s)	35, 285
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	77, 419, 497
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	3 cut(s)	543, 829, 881
NlaIII	CATG	6 cut(s)	61, 136, 239, 433, 527, 925
NlaIV	GGNNCC	2 cut(s)	99, 664
NsiI	ATGCAT	2 cut(s)	265, 877
PaeR7I	CTCGAG	1 cut(s)	188
PagI	TCATGA	2 cut(s)	57, 523
PciSI	GCTCTTC	1 cut(s)	292
PdmI	GAANNNNTTC	2 cut(s)	197, 707
PfeI	GAWTC	1 cut(s)	796
PkrI	GCNGC	6 cut(s)	79, 211, 214, 409, 412, 916
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	99, 664
PspPI	GGNCC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	881
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	3 cut(s)	456, 622, 698
RsaNI	GTAC	3 cut(s)	455, 621, 697
RseI	CAYNNNNRTG	3 cut(s)	234, 240, 428
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	276, 555, 1003
SatI	GCNGC	6 cut(s)	78, 210, 213, 408, 411, 915
Sau3AI	GATC	3 cut(s)	543, 829, 881
Sau96I	GGNCC	1 cut(s)	440
ScaI	AGTACT	1 cut(s)	622
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	2 cut(s)	35, 285
SduI	GDGCHC	3 cut(s)	102, 374, 604
SetI	ASST	8 cut(s)	79, 99, 112, 304, 314, 328, 360, 442
SfaNI	GCATC	6 cut(s)	168, 250, 272, 745, 862, 926
SfcI	CTRYAG	1 cut(s)	408
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	440
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	3 cut(s)	234, 240, 428
SmlI	CTYRAG	2 cut(s)	188, 839
SmoI	CTYRAG	2 cut(s)	188, 839
Sse9I	AATT	5 cut(s)	267, 486, 688, 721, 988
SsiI	CCGC	6 cut(s)	102, 152, 223, 353, 392, 405
StyD4I	CCNGG	2 cut(s)	33, 283
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	3 cut(s)	242, 369, 382
TaqI	TCGA	2 cut(s)	189, 900
TasI	AATT	5 cut(s)	267, 486, 688, 721, 988
TatI	WGTACW	2 cut(s)	620, 696
TfiI	GAWTC	1 cut(s)	796
Tru1I	TTAA	3 cut(s)	276, 555, 1003
Tru9I	TTAA	3 cut(s)	276, 555, 1003
TscAI	CASTG	4 cut(s)	324, 374, 541, 546
TseI	GCWGC	6 cut(s)	77, 209, 212, 407, 410, 914
TspDTI	ATGAA	5 cut(s)	17, 46, 149, 573, 978
TspGWI	ACGGA	3 cut(s)	113, 432, 842
TspRI	CASTG	4 cut(s)	324, 374, 541, 546
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	688
XhoI	CTCGAG	1 cut(s)	188
XmnI	GAANNNNTTC	2 cut(s)	197, 707
ZrmI	AGTACT	1 cut(s)	622
Zsp2I	ATGCAT	2 cut(s)	265, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.