Rorug05G0068800

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004070
Physical Location & Seq
Reverse (-)
5891136 .. 5892216
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0068800.1

Sequence Viewer

Length: 684 bp
ATGAATATTGAGGAGGAGTACATAGATGTGCTTTTGGTCCCTGCTGGGTTACTGATCATGCTAGTTTACCACCTCTTCCTCCTTTTCAAGTACTTCAATAAGCCTCTCTCCACATCCTTAGGTTACGAAAACAACGACAAACGAATTTGGGTTGAAAAAATCTTGCAGTTGCAGGGTGATGATCTTAGAAAGAGTGTTAAAACAGCTCTCAATGTGATTTCATCGAGTACAACTGCAACTATTTATCTGGCAACAATCTCATTAACCCTCTGCTCACTTATCGGAGCTTGGATGGCAAACAACACCAACAATTTCTTCCCAAGAGAACTTATATACGGCAATACAAGTGCGTCGATAGTTTCGATCAAGTACATATGCCTCTTAACCTGTTTTCTCCTTGGTTTTTCGTGCTTTGTTCAATCAGCTAGGAACTTCGTCCATTCGAACTTCCTATTGAGCACTCCGGGCGCGACGGCTAAATCTGATGTGAAGAAAGTGGAAAAAGCAGTTCAAAGAGGAAGTGAATTTTGGTTACTTGGGCTTAGAGCTCTATATTGTGCTCTTAATTTTCTGCTGTGGTTTTTTGGACCTATACCGATGTTTGTATCCTCTATCATAATGGTGGTGATTCTGTATTGCCATGACTTTAGATCAGATGATCAAAAGGGTCTTAATGTAGTGTAA

Protein Analysis

227

Amino Acids

25.64

Weight (kDa)

8.49

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 12 - 219 2.2e-57 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 470
AcsI RAATTY 2 cut(s) 144, 524
AfaI GTAC 4 cut(s) 20, 92, 229, 371
AgsI TTSAA 5 cut(s) 88, 97, 155, 419, 512
AjuI GAANNNNNNNTTGG 4 cut(s) 299, 331, 511, 543
AluBI AGCT 4 cut(s) 206, 287, 425, 548
AluI AGCT 4 cut(s) 206, 287, 425, 548
Alw21I GWGCWC 3 cut(s) 461, 550, 562
ApoI RAATTY 2 cut(s) 144, 524
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 2 cut(s) 37, 587
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 188, 637
AsuII TTCGAA 1 cut(s) 443
AvaII GGWCC 2 cut(s) 37, 587
AxyI CCTNAGG 1 cut(s) 118
BanII GRGCYC 1 cut(s) 550
Bbv12I GWGCWC 3 cut(s) 461, 550, 562
BccI CCATC 1 cut(s) 286
BceAI ACGGC 2 cut(s) 352, 489
BciVI GTATCC 1 cut(s) 616
BclI TGATCA 2 cut(s) 54, 658
BcnI CCSGG 1 cut(s) 465
BfaI CTAG 2 cut(s) 62, 426
BfuI GTATCC 1 cut(s) 616
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 2 cut(s) 37, 587
BmgT120I GGNCC 2 cut(s) 37, 587
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 397
Bse21I CCTNAGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 2 cut(s) 113, 297
BseRI GAGGAG 2 cut(s) 26, 29
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 470
BsiHKAI GWGCWC 3 cut(s) 461, 550, 562
BsiSI CCGG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 443
Bsp1286I GDGCHC 3 cut(s) 461, 550, 562
Bsp143I GATC 5 cut(s) 54, 181, 363, 650, 658
BspFNI CGCG 1 cut(s) 470
BspLI GGNNCC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 5 cut(s) 54, 181, 363, 650, 658
BssT1I CCWWGG 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 443
BstDEI CTNAG 3 cut(s) 118, 185, 542
BstF5I GGATG 2 cut(s) 113, 297
BstFNI CGCG 1 cut(s) 470
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 5 cut(s) 57, 184, 366, 653, 661
BstMBI GATC 5 cut(s) 54, 181, 363, 650, 658
BstMWI GCNNNNNNNGC 2 cut(s) 293, 465
BstSCI CCNGG 1 cut(s) 463
BstUI CGCG 1 cut(s) 470
Bsu36I CCTNAGG 1 cut(s) 118
BsuI GTATCC 1 cut(s) 616
BtsCI GGATG 2 cut(s) 113, 297
CfoI GCGC 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 37, 587
CseI GACGC 1 cut(s) 339
Csp6I GTAC 4 cut(s) 19, 91, 228, 370
CviAII CATG 2 cut(s) 58, 641
CviJI RGCY 7 cut(s) 103, 206, 287, 425, 476, 541, 548
CviKI_1 RGCY 7 cut(s) 103, 206, 287, 425, 476, 541, 548
CviQI GTAC 4 cut(s) 19, 91, 228, 370
DdeI CTNAG 3 cut(s) 118, 185, 542
DpnI GATC 5 cut(s) 56, 183, 365, 652, 660
DpnII GATC 5 cut(s) 54, 181, 363, 650, 658
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 37, 587
Eco53kI GAGCTC 1 cut(s) 548
Eco81I CCTNAGG 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 548
EcoT14I CCWWGG 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 2 cut(s) 61, 644
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 57, 640
FauNDI CATATG 1 cut(s) 374
FbaI TGATCA 2 cut(s) 54, 658
FokI GGATG 2 cut(s) 100, 304
FriOI GRGCYC 1 cut(s) 550
FspBI CTAG 2 cut(s) 62, 426
GlaI GCGC 1 cut(s) 469
GsaI CCCAGC 1 cut(s) 48
HapII CCGG 1 cut(s) 464
HgaI GACGC 1 cut(s) 339
HhaI GCGC 1 cut(s) 470
Hin1II CATG 2 cut(s) 61, 644
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HinfI GANTC 1 cut(s) 628
HpaII CCGG 1 cut(s) 464
HphI GGTGA 2 cut(s) 188, 637
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 3 cut(s) 284, 484, 655
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 2 cut(s) 355, 475
HpyCH4V TGCA 3 cut(s) 166, 172, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 465
HpyF3I CTNAG 3 cut(s) 118, 185, 542
Hsp92II CATG 2 cut(s) 61, 644
HspAI GCGC 1 cut(s) 468
Ksp22I TGATCA 2 cut(s) 54, 658
Kzo9I GATC 5 cut(s) 54, 181, 363, 650, 658
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 6 cut(s) 30, 54, 158, 233, 400, 477
MaeI CTAG 2 cut(s) 62, 426
MaeIII GTNAC 3 cut(s) 48, 122, 531
MalI GATC 5 cut(s) 56, 183, 365, 652, 660
MboI GATC 5 cut(s) 54, 181, 363, 650, 658
MboII GAAGA 3 cut(s) 67, 307, 502
MhlI GDGCHC 3 cut(s) 461, 550, 562
MluCI AATT 4 cut(s) 144, 310, 524, 565
MnlI CCTC 9 cut(s) 4, 7, 83, 89, 114, 278, 389, 509, 619
MseI TTAA 5 cut(s) 198, 263, 383, 564, 672
MslI CAYNNNNRTG 2 cut(s) 26, 620
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 2 cut(s) 293, 465
NciI CCSGG 1 cut(s) 465
NdeI CATATG 1 cut(s) 374
NdeII GATC 5 cut(s) 54, 181, 363, 650, 658
NlaIII CATG 2 cut(s) 61, 644
NlaIV GGNNCC 1 cut(s) 39
NspV TTCGAA 1 cut(s) 443
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 359
PfeI GAWTC 1 cut(s) 628
Psp124BI GAGCTC 1 cut(s) 550
PspFI CCCAGC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 37, 587
RsaI GTAC 4 cut(s) 20, 92, 229, 371
RsaNI GTAC 4 cut(s) 19, 91, 228, 370
RseI CAYNNNNRTG 2 cut(s) 26, 620
SacI GAGCTC 1 cut(s) 550
SaqAI TTAA 5 cut(s) 198, 263, 383, 564, 672
Sau3AI GATC 5 cut(s) 54, 181, 363, 650, 658
Sau96I GGNCC 2 cut(s) 37, 587
ScaI AGTACT 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 3 cut(s) 461, 550, 562
SetI ASST 8 cut(s) 75, 124, 208, 289, 389, 427, 550, 592
SfuI TTCGAA 1 cut(s) 443
SinI GGWCC 2 cut(s) 37, 587
SmiMI CAYNNNNRTG 2 cut(s) 26, 620
Sse9I AATT 4 cut(s) 144, 310, 524, 565
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 62, 426
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 397
TaqI TCGA 4 cut(s) 224, 353, 362, 443
TasI AATT 4 cut(s) 144, 310, 524, 565
TatI WGTACW 4 cut(s) 18, 90, 227, 369
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 5 cut(s) 198, 263, 383, 564, 672
Tru9I TTAA 5 cut(s) 198, 263, 383, 564, 672
TspDTI ATGAA 2 cut(s) 17, 210
VpaK11BI GGWCC 2 cut(s) 37, 587
XapI RAATTY 2 cut(s) 144, 524
XspI CTAG 2 cut(s) 62, 426
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.