Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Reverse (-)

6490611 .. 6492474

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G120000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAACTCCATAGTTTCCTTGCTCCTTGTTCTTGTTGTTGTGCAGTTAAATCCATCTTCATGTGACCCAGAACATGATTACCATAAAGAAGAAACACATGAGTCTTGGGAGGGAGCCACCACTCTAACACTTCCAAGTTTGTCAGACGACTTGCCGTTTGGAGAGTTTCTTTCCTCTGGTTTCTACCGCAAGAGTTGTCCTGACCTTGAAGGCATTATCAATAGGAAGGTCAAGGAATGGCTTAAGCAGGATTTCAGCCTTGCTGCTAGCCTCATGAGGTTGCATTTCCATGACTGTGCCATCAGGGGATGTGATGCCTCCATCTTATTATACCATGAGGGAAGTGAGAGGACAGCTGCGGCCAGCAAGACACTAAGAGGGTTTGAACTGATAGATGATATTAAAGCAGAGGTTGAGAAGAAGTGCCCAAAGACAGTATCTTGTGCAGACATTTTGACTGCAGCTACCAGAGATGCTACTGTTCAAGCTGGAGGTCCATACTGGGCCGTCCCCTATGGGAGGAGAGATGGGAAAGTTTCAATTGCCAAGGAAACTGAAATGGTGCCAATGGGTCACGAAAACATCACTGCTTTGGTTGAGTTTTTCCAATCACAGGGCTTGAATGTACTTGACTTGGTCGTTCTCTCAGGGGCACACACCATAGGAAGGTCTTCATGCGGTTCTGTACAACACAGGCTCTATAACTTCAGTGGAACTGGCAAGCCTGATCCATCCCTTGATCCACAGTATTTGAACTACTTGGAAAGAAAATGCAGATGGGCATCGGACTATGTTGATCTTGATGCTGCAACTCCACATAAATTTGACATTGGATATTACACCAATCTGCAGAAGAAGATGGGACTTTTGTCCACAGACCAACTGTTGTATTCTGATCCAAGGACTTCACCTCTTATCAAGGCTTTTGCTTACCAGCCATCAGTCTTCTACCACCAGTTTGGAGTGTCCATGGCCAAATTAGGGAATGTTCAAGTCCTCACCGAGAAAAACGAAGGCGAAATTCGAACCAATTGCAATTTTGTCAACTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

352

Amino Acids

39.12

Weight (kDa)

5.78

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	562
AciI	CCGC	3 cut(s)	187, 359, 678
AclWI	GGATC	3 cut(s)	722, 734, 890
AcoI	YGGCCR	2 cut(s)	360, 972
AcsI	RAATTY	2 cut(s)	821, 1020
AcuI	CTGAAG	1 cut(s)	691
AfaI	GTAC	2 cut(s)	627, 687
AfiI	CCNNNNNNNGG	4 cut(s)	519, 613, 666, 981
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	7 cut(s)	209, 386, 485, 540, 622, 754, 992
AluBI	AGCT	3 cut(s)	356, 464, 488
AluI	AGCT	3 cut(s)	356, 464, 488
AlwI	GGATC	3 cut(s)	722, 734, 890
AoxI	GGCC	3 cut(s)	360, 504, 972
ApeKI	GCWGC	4 cut(s)	263, 356, 461, 806
ApoI	RAATTY	2 cut(s)	821, 1020
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp700I	GAANNNNTTC	1 cut(s)	670
AspS9I	GGNCC	2 cut(s)	494, 504
AsuHPI	GGTGA	2 cut(s)	900, 991
AsuII	TTCGAA	1 cut(s)	1024
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	494
BaeGI	GKGCMC	2 cut(s)	428, 655
BalI	TGGCCA	1 cut(s)	974
BanI	GGYRCC	1 cut(s)	562
BbsI	GAAGAC	2 cut(s)	663, 937
BbvI	GCAGC	4 cut(s)	250, 343, 473, 793
BccI	CCATC	8 cut(s)	61, 308, 329, 521, 739, 771, 853, 946
BceAI	ACGGC	2 cut(s)	139, 491
BcgI	CGANNNNNNTGC	2 cut(s)	1014, 1048
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	2 cut(s)	459, 848
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	5 cut(s)	264, 357, 360, 462, 807
BlsI	GCNGC	5 cut(s)	265, 358, 361, 463, 808
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	494, 504
BmiI	GGNNCC	2 cut(s)	115, 564
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	4 cut(s)	304, 463, 791, 793
BmtI	GCTAGC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	511
BoxI	GACNNNNGTC	1 cut(s)	868
BpiI	GAAGAC	2 cut(s)	663, 937
BpmI	CTGGAG	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	1024
BsaBI	GATNNNNATC	1 cut(s)	781
BsaJI	CCNNGG	3 cut(s)	546, 899, 969
Bsc4I	CCNNNNNNNGG	4 cut(s)	519, 613, 666, 981
Bse1I	ACTGG	3 cut(s)	506, 721, 955
Bse8I	GATNNNNATC	1 cut(s)	781
BseDI	CCNNGG	3 cut(s)	546, 899, 969
BseGI	GGATG	2 cut(s)	314, 731
BseJI	GATNNNNATC	1 cut(s)	781
BseLI	CCNNNNNNNGG	4 cut(s)	519, 613, 666, 981
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	3 cut(s)	506, 721, 955
BseRI	GAGGAG	1 cut(s)	535
BseSI	GKGCMC	2 cut(s)	428, 655
BseXI	GCAGC	4 cut(s)	250, 343, 473, 793
BsgI	GTGCAG	2 cut(s)	62, 465
BshFI	GGCC	3 cut(s)	362, 506, 974
BshNI	GGYRCC	1 cut(s)	562
BslFI	GGGAC	2 cut(s)	494, 876
BslI	CCNNNNNNNGG	4 cut(s)	519, 613, 666, 981
BsmFI	GGGAC	2 cut(s)	494, 876
BsnI	GGCC	3 cut(s)	362, 506, 974
Bsp119I	TTCGAA	1 cut(s)	1024
Bsp1286I	GDGCHC	2 cut(s)	428, 655
Bsp1407I	TGTACA	1 cut(s)	685
Bsp143I	GATC	4 cut(s)	727, 739, 796, 895
Bsp19I	CCATGG	1 cut(s)	969
BspACI	CCGC	3 cut(s)	187, 359, 678
BspANI	GGCC	3 cut(s)	362, 506, 974
BspCNI	CTCAG	1 cut(s)	659
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	115, 564
BspMAI	CTGCAG	2 cut(s)	463, 852
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	3 cut(s)	722, 734, 890
BspT104I	TTCGAA	1 cut(s)	1024
BspT107I	GGYRCC	1 cut(s)	562
BspTI	CTTAAG	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	685
BsrI	ACTGG	3 cut(s)	506, 721, 955
BssECI	CCNNGG	3 cut(s)	546, 899, 969
BssMI	GATC	4 cut(s)	727, 739, 796, 895
BssT1I	CCWWGG	3 cut(s)	546, 899, 969
Bst4CI	ACNGT	5 cut(s)	296, 436, 481, 747, 885
BstAFI	CTTAAG	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	685
BstBI	TTCGAA	1 cut(s)	1024
BstC8I	GCNNGC	3 cut(s)	268, 364, 722
BstDEI	CTNAG	2 cut(s)	374, 646
BstDSI	CCRYGG	1 cut(s)	969
BstENI	CCTNNNNNAGG	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	314, 731
BstKTI	GATC	4 cut(s)	730, 742, 799, 898
BstMBI	GATC	4 cut(s)	727, 739, 796, 895
BstPAI	GACNNNNGTC	1 cut(s)	868
BstSFI	CTRYAG	2 cut(s)	459, 848
BstSLI	GKGCMC	2 cut(s)	428, 655
BstV1I	GCAGC	4 cut(s)	250, 343, 473, 793
BstV2I	GAAGAC	2 cut(s)	663, 937
BstXI	CCANNNNNNTGG	1 cut(s)	959
BsuRI	GGCC	3 cut(s)	362, 506, 974
BtgI	CCRYGG	1 cut(s)	969
BtsCI	GGATG	2 cut(s)	314, 731
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	585, 715
Cac8I	GCNNGC	3 cut(s)	268, 364, 722
CciI	TCATGA	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	494, 504
Csp6I	GTAC	2 cut(s)	626, 686
CspCI	CAANNNNNGTGG	2 cut(s)	732, 767
CviAII	CATG	8 cut(s)	60, 74, 98, 274, 290, 335, 675, 970
CviQI	GTAC	2 cut(s)	626, 686
DdeI	CTNAG	2 cut(s)	374, 646
DpnI	GATC	4 cut(s)	729, 741, 798, 897
DpnII	GATC	4 cut(s)	727, 739, 796, 895
EaeI	YGGCCR	2 cut(s)	360, 972
Eco130I	CCWWGG	3 cut(s)	546, 899, 969
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	691
EcoNI	CCTNNNNNAGG	1 cut(s)	517
EcoT14I	CCWWGG	3 cut(s)	546, 899, 969
ErhI	CCWWGG	3 cut(s)	546, 899, 969
FaeI	CATG	8 cut(s)	63, 77, 101, 277, 293, 338, 678, 973
FaqI	GGGAC	2 cut(s)	494, 876
FatI	CATG	8 cut(s)	59, 73, 97, 273, 289, 334, 674, 969
Fnu4HI	GCNGC	5 cut(s)	264, 357, 360, 462, 807
FokI	GGATG	2 cut(s)	321, 718
Fsp4HI	GCNGC	5 cut(s)	264, 357, 360, 462, 807
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	5 cut(s)	264, 357, 360, 462, 807
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	362, 506, 974
Hin1II	CATG	8 cut(s)	63, 77, 101, 277, 293, 338, 678, 973
HincII	GTYRAC	1 cut(s)	1045
HindII	GTYRAC	1 cut(s)	1045
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	2 cut(s)	900, 991
Hpy166II	GTNNAC	2 cut(s)	873, 1045
Hpy188I	TCNGA	3 cut(s)	145, 787, 895
Hpy188III	TCNNGA	4 cut(s)	200, 274, 575, 800
Hpy8I	GTNNAC	2 cut(s)	873, 1045
HpyAV	CCTTC	4 cut(s)	203, 220, 660, 1007
HpyCH4III	ACNGT	5 cut(s)	296, 436, 481, 747, 885
HpyCH4V	TGCA	8 cut(s)	43, 283, 446, 461, 774, 809, 850, 1035
HpyF3I	CTNAG	2 cut(s)	374, 646
Hsp92II	CATG	8 cut(s)	63, 77, 101, 277, 293, 338, 678, 973
Kzo9I	GATC	4 cut(s)	727, 739, 796, 895
LmnI	GCTCC	2 cut(s)	27, 113
Lsp1109I	GCAGC	4 cut(s)	250, 343, 473, 793
LweI	GCATC	4 cut(s)	304, 463, 791, 793
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	62, 572
MalI	GATC	4 cut(s)	729, 741, 798, 897
MboI	GATC	4 cut(s)	727, 739, 796, 895
MboII	GAAGA	7 cut(s)	48, 101, 430, 663, 865, 868, 937
MfeI	CAATTG	2 cut(s)	540, 1030
MhlI	GDGCHC	2 cut(s)	428, 655
MlsI	TGGCCA	1 cut(s)	974
MluCI	AATT	6 cut(s)	540, 821, 977, 1020, 1030, 1036
MluNI	TGGCCA	1 cut(s)	974
MlyI	GAGTC	1 cut(s)	110
Mox20I	TGGCCA	1 cut(s)	974
MroXI	GAANNNNTTC	1 cut(s)	670
MscI	TGGCCA	1 cut(s)	974
MseI	TTAA	4 cut(s)	47, 243, 402, 1054
MslI	CAYNNNNRTG	3 cut(s)	58, 288, 294
Msp20I	TGGCCA	1 cut(s)	974
MspA1I	CMGCKG	1 cut(s)	356
MspCI	CTTAAG	1 cut(s)	242
MunI	CAATTG	2 cut(s)	540, 1030
NcoI	CCATGG	1 cut(s)	969
NdeII	GATC	4 cut(s)	727, 739, 796, 895
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	8 cut(s)	63, 77, 101, 277, 293, 338, 678, 973
NlaIV	GGNNCC	2 cut(s)	115, 564
NmuCI	GTSAC	2 cut(s)	62, 572
NspV	TTCGAA	1 cut(s)	1024
PagI	TCATGA	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	670
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	5 cut(s)	265, 358, 361, 463, 808
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PshAI	GACNNNNGTC	1 cut(s)	868
PspN4I	GGNNCC	2 cut(s)	115, 564
PspPI	GGNCC	2 cut(s)	494, 504
PstI	CTGCAG	2 cut(s)	463, 852
PsyI	GACNNNGTC	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	627, 687
RsaNI	GTAC	2 cut(s)	626, 686
RseI	CAYNNNNRTG	3 cut(s)	58, 288, 294
SaqAI	TTAA	4 cut(s)	47, 243, 402, 1054
SatI	GCNGC	5 cut(s)	264, 357, 360, 462, 807
Sau3AI	GATC	4 cut(s)	727, 739, 796, 895
Sau96I	GGNCC	2 cut(s)	494, 504
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	428, 655
SfaNI	GCATC	4 cut(s)	304, 463, 791, 793
SfcI	CTRYAG	2 cut(s)	459, 848
SfuI	TTCGAA	1 cut(s)	1024
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	3 cut(s)	58, 288, 294
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	6 cut(s)	540, 821, 977, 1020, 1030, 1036
SsiI	CCGC	3 cut(s)	187, 359, 678
SspMI	CTAG	1 cut(s)	267
StyI	CCWWGG	3 cut(s)	546, 899, 969
TaaI	ACNGT	5 cut(s)	296, 436, 481, 747, 885
TaqI	TCGA	1 cut(s)	1024
TasI	AATT	6 cut(s)	540, 821, 977, 1020, 1030, 1036
TatI	WGTACW	2 cut(s)	625, 685
TauI	GCSGC	1 cut(s)	362
Tru1I	TTAA	4 cut(s)	47, 243, 402, 1054
Tru9I	TTAA	4 cut(s)	47, 243, 402, 1054
TscAI	CASTG	2 cut(s)	592, 715
TseFI	GTSAC	2 cut(s)	62, 572
TseI	GCWGC	4 cut(s)	263, 356, 461, 806
Tsp45I	GTSAC	2 cut(s)	62, 572
TspDTI	ATGAA	3 cut(s)	17, 48, 663
TspRI	CASTG	2 cut(s)	592, 715
Tth111I	GACNNNGTC	1 cut(s)	635
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	494
XagI	CCTNNNNNAGG	1 cut(s)	517
XapI	RAATTY	2 cut(s)	821, 1020
XmnI	GAANNNNTTC	1 cut(s)	670
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.