Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Reverse (-)

7917856 .. 7919757

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAATCCCTTAGTTTCACTGCTCTTTGTTCTCCTCGTTGTTGTTCAGTTGAGTCCAACCTTATCATACCCGGCAGATGATCACCACCATTACAACGACGACAATGACGAATCACCTGAACACTGGAAGGGTGCCACACCTCTAACAATTCCGACCATTTCAGAAAACTTGCCCTTTGGCGATTTTCTCTCCTTTTCTCACTACCACAGGAGTTGTCCAGATCTTGAACACATTATTAATGAAAAACTGAGGCAATGGCTTAAGCAGGACTACAGCATAGCTGCAAGTCTCATGAGGTTGCACTTCCATGACTGTGCCATCAGGGGATGTGATGCCTCCATCTTACTAAACCATGAGGGAAGTGAGAGGAGTGCCTTGGCCAGCAAGACACTGAGAGGGTTTGAAGTGATAGATGATATCAAAGCAGAGGTCGAGAAGAGGTGTCCCAAAGTAGTATCTTGTGCAGATATCTTAACAGCAGCTACAAGAGATGCCACTGTTATGGTCGGAGGTCCATACTGGATGGTTCCCTATGGTCGGAAAGATGGGCGAGTTTCAATTGCCAAGGAAACAGAACGGGTGCCAATGGGTCATGAAAACATTACTGCTTTGGTTGAGTTTTTTCAATCTCAGGGCTTGAATGTGCTTGACTTGGTTGTTCTCTCTGGAGCACACACCATAGGAAGGGCTTCATGTGCTTCCATACAAAACAGGCTCTTCAACTTCGATGGACATGGGAACTCGGATCCATCCCTTAATGATAAATACTTGAACTTCTTGAAAAGAAAATGCAGATGGGGATCAGACTATGTTGACCTTGATGCTACAACTCCAAAGACCTTTGACGCTGCATACTACTCAAATCTGCAGAGGGATATGGGACTTCTTAAAACAGACCAGTTGTTGTATTCTGATACAAGGACTTCACCTCTTGTCACTGCTTTGGCTCACCAGCCCCAAGTCTTCTACCACCAGTTTGCAGTGTCCATGGCCAAACTGGGGAATGTTCAAGTCCTCACCGGCCAAGATGAAGGCGAAATTCGAACCAACTGCAATTTTGTCAATTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

358

Amino Acids

40.04

Weight (kDa)

5.81

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	80 - 317	4.7e-80	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 580
AclWI	GGATC	3 cut(s)	740, 753, 808
AcoI	YGGCCR	3 cut(s)	378, 990, 1021
AcsI	RAATTY	1 cut(s)	1038
AfiI	CCNNNNNNNGG	3 cut(s)	537, 684, 999
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	9 cut(s)	227, 404, 558, 626, 640, 721, 772, 781, 1010
AluBI	AGCT	2 cut(s)	281, 482
AluI	AGCT	2 cut(s)	281, 482
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	740, 753, 808
AoxI	GGCC	3 cut(s)	378, 990, 1021
ApeKI	GCWGC	3 cut(s)	281, 479, 848
ApoI	RAATTY	1 cut(s)	1038
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
AseI	ATTAAT	1 cut(s)	237
Asp700I	GAANNNNTTC	1 cut(s)	688
AspS9I	GGNCC	1 cut(s)	512
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	5 cut(s)	74, 105, 918, 941, 1009
AsuII	TTCGAA	1 cut(s)	1042
AvaII	GGWCC	1 cut(s)	512
BalI	TGGCCA	2 cut(s)	380, 992
BamHI	GGATCC	1 cut(s)	745
BanI	GGYRCC	2 cut(s)	131, 580
BbsI	GAAGAC	1 cut(s)	955
Bbv12I	GWGCWC	1 cut(s)	673
BbvI	GCAGC	3 cut(s)	268, 491, 835
BccI	CCATC	7 cut(s)	326, 347, 517, 539, 722, 757, 789
BcgI	CGANNNNNNTGC	2 cut(s)	1032, 1066
BclI	TGATCA	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	293
BfmI	CTRYAG	2 cut(s)	271, 866
BfrI	CTTAAG	1 cut(s)	260
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	3 cut(s)	282, 480, 849
BlsI	GCNGC	3 cut(s)	283, 481, 850
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	4 cut(s)	133, 528, 582, 747
BmrFI	CCNGG	1 cut(s)	71
BmrI	ACTGGG	1 cut(s)	1007
BmsI	GCATC	3 cut(s)	322, 481, 811
BmuI	ACTGGG	1 cut(s)	1007
BpiI	GAAGAC	1 cut(s)	955
BpmI	CTGGAG	1 cut(s)	687
Bpu14I	TTCGAA	1 cut(s)	1042
BpuMI	CCSGG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	799
BsaJI	CCNNGG	3 cut(s)	375, 564, 987
Bsc4I	CCNNNNNNNGG	3 cut(s)	537, 684, 999
Bse118I	RCCGGY	1 cut(s)	1019
Bse1I	ACTGG	5 cut(s)	128, 524, 898, 973, 1002
Bse3DI	GCAATG	1 cut(s)	260
Bse8I	GATNNNNATC	1 cut(s)	799
BseDI	CCNNGG	3 cut(s)	375, 564, 987
BseGI	GGATG	3 cut(s)	332, 528, 749
BseJI	GATNNNNATC	1 cut(s)	799
BseLI	CCNNNNNNNGG	3 cut(s)	537, 684, 999
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	3 cut(s)	239, 383, 644
BseNI	ACTGG	5 cut(s)	128, 524, 898, 973, 1002
BseRI	GAGGAG	2 cut(s)	23, 382
BseXI	GCAGC	3 cut(s)	268, 491, 835
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	3 cut(s)	380, 992, 1023
BshNI	GGYRCC	2 cut(s)	131, 580
BsiHKAI	GWGCWC	1 cut(s)	673
BsiSI	CCGG	2 cut(s)	71, 1020
BslFI	GGGAC	2 cut(s)	429, 894
BslI	CCNNNNNNNGG	3 cut(s)	537, 684, 999
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	2 cut(s)	429, 894
BsnI	GGCC	3 cut(s)	380, 992, 1023
Bsp119I	TTCGAA	1 cut(s)	1042
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp143I	GATC	4 cut(s)	79, 220, 745, 800
Bsp19I	CCATGG	1 cut(s)	987
BspANI	GGCC	3 cut(s)	380, 992, 1023
BspCNI	CTCAG	3 cut(s)	240, 384, 643
BspHI	TCATGA	2 cut(s)	291, 592
BspLI	GGNNCC	4 cut(s)	133, 528, 582, 747
BspMAI	CTGCAG	1 cut(s)	870
BspPI	GGATC	3 cut(s)	740, 753, 808
BspQI	GCTCTTC	1 cut(s)	722
BspT104I	TTCGAA	1 cut(s)	1042
BspT107I	GGYRCC	2 cut(s)	131, 580
BspTI	CTTAAG	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	1019
BsrI	ACTGG	5 cut(s)	128, 524, 898, 973, 1002
BssAI	RCCGGY	1 cut(s)	1019
BssECI	CCNNGG	3 cut(s)	375, 564, 987
BssMI	GATC	4 cut(s)	79, 220, 745, 800
BssT1I	CCWWGG	3 cut(s)	375, 564, 987
Bst4CI	ACNGT	2 cut(s)	314, 499
Bst6I	CTCTTC	2 cut(s)	431, 722
BstAFI	CTTAAG	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	1042
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	4 cut(s)	10, 248, 392, 630
BstDSI	CCRYGG	1 cut(s)	987
BstF5I	GGATG	3 cut(s)	332, 528, 749
BstKTI	GATC	4 cut(s)	82, 223, 748, 803
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	79, 220, 745, 800
BstMWI	GCNNNNNNNGC	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	2 cut(s)	271, 866
BstV1I	GCAGC	3 cut(s)	268, 491, 835
BstV2I	GAAGAC	1 cut(s)	955
BstX2I	RGATCY	2 cut(s)	220, 745
BstXI	CCANNNNNNTGG	1 cut(s)	502
BstYI	RGATCY	2 cut(s)	220, 745
BsuRI	GGCC	3 cut(s)	380, 992, 1023
BtgI	CCRYGG	1 cut(s)	987
BtsCI	GGATG	3 cut(s)	332, 528, 749
BtsI	GCAGTG	3 cut(s)	17, 936, 987
BtsIMutI	CAGTG	6 cut(s)	17, 121, 389, 495, 936, 987
Cac8I	GCNNGC	1 cut(s)	382
CciI	TCATGA	2 cut(s)	291, 592
Cfr10I	RCCGGY	1 cut(s)	1019
Cfr13I	GGNCC	1 cut(s)	512
CseI	GACGC	1 cut(s)	854
CspCI	CAANNNNNGTGG	2 cut(s)	194, 229
CviAII	CATG	7 cut(s)	292, 308, 353, 593, 693, 734, 988
DdeI	CTNAG	4 cut(s)	10, 248, 392, 630
DpnI	GATC	4 cut(s)	81, 222, 747, 802
DpnII	GATC	4 cut(s)	79, 220, 745, 800
EaeI	YGGCCR	3 cut(s)	378, 990, 1021
Eam1104I	CTCTTC	2 cut(s)	431, 722
EarI	CTCTTC	2 cut(s)	431, 722
Eco130I	CCWWGG	3 cut(s)	375, 564, 987
Eco32I	GATATC	2 cut(s)	418, 469
Eco47I	GGWCC	1 cut(s)	512
EcoRV	GATATC	2 cut(s)	418, 469
EcoT14I	CCWWGG	3 cut(s)	375, 564, 987
ErhI	CCWWGG	3 cut(s)	375, 564, 987
FaeI	CATG	7 cut(s)	295, 311, 356, 596, 696, 737, 991
FaqI	GGGAC	2 cut(s)	429, 894
FatI	CATG	7 cut(s)	291, 307, 352, 592, 692, 733, 987
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	282, 480, 849
FokI	GGATG	3 cut(s)	339, 535, 736
Fsp4HI	GCNGC	3 cut(s)	282, 480, 849
GluI	GCNGC	3 cut(s)	282, 480, 849
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	3 cut(s)	380, 992, 1023
HapII	CCGG	2 cut(s)	71, 1020
HgaI	GACGC	1 cut(s)	854
Hin1II	CATG	7 cut(s)	295, 311, 356, 596, 696, 737, 991
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	3 cut(s)	4, 52, 110
HpaII	CCGG	2 cut(s)	71, 1020
HphI	GGTGA	5 cut(s)	74, 105, 918, 941, 1009
Hpy166II	GTNNAC	1 cut(s)	814
Hpy188I	TCNGA	7 cut(s)	153, 163, 509, 540, 745, 805, 913
Hpy188III	TCNNGA	7 cut(s)	218, 224, 292, 433, 593, 666, 778
Hpy8I	GTNNAC	1 cut(s)	814
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	121, 678, 1025
HpyCH4III	ACNGT	2 cut(s)	314, 499
HpyCH4V	TGCA	8 cut(s)	284, 301, 464, 792, 851, 868, 980, 1053
HpyF10VI	GCNNNNNNNGC	1 cut(s)	695
HpyF3I	CTNAG	4 cut(s)	10, 248, 392, 630
Hsp92II	CATG	7 cut(s)	295, 311, 356, 596, 696, 737, 991
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	79, 220, 745, 800
LguI	GCTCTTC	1 cut(s)	722
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	3 cut(s)	268, 491, 835
LweI	GCATC	3 cut(s)	322, 481, 811
MaeIII	GTNAC	1 cut(s)	934
MalI	GATC	4 cut(s)	81, 222, 747, 802
MboI	GATC	4 cut(s)	79, 220, 745, 800
MboII	GAAGA	3 cut(s)	448, 709, 955
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	2 cut(s)	220, 745
MhlI	GDGCHC	1 cut(s)	673
MlsI	TGGCCA	2 cut(s)	380, 992
MluCI	AATT	5 cut(s)	147, 558, 1038, 1054, 1063
MluNI	TGGCCA	2 cut(s)	380, 992
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	4 cut(s)	80, 176, 487, 518
Mox20I	TGGCCA	2 cut(s)	380, 992
MroXI	GAANNNNTTC	1 cut(s)	688
MscI	TGGCCA	2 cut(s)	380, 992
MseI	TTAA	5 cut(s)	237, 261, 473, 756, 888
MslI	CAYNNNNRTG	3 cut(s)	306, 312, 500
Msp20I	TGGCCA	2 cut(s)	380, 992
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	2 cut(s)	71, 1020
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	695
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	987
NdeII	GATC	4 cut(s)	79, 220, 745, 800
NlaIII	CATG	7 cut(s)	295, 311, 356, 596, 696, 737, 991
NlaIV	GGNNCC	4 cut(s)	133, 528, 582, 747
NmuCI	GTSAC	1 cut(s)	934
NspV	TTCGAA	1 cut(s)	1042
PagI	TCATGA	2 cut(s)	291, 592
PciSI	GCTCTTC	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	688
PfeI	GAWTC	2 cut(s)	4, 110
PkrI	GCNGC	3 cut(s)	283, 481, 850
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	237
PspN4I	GGNNCC	4 cut(s)	133, 528, 582, 747
PspPI	GGNCC	1 cut(s)	512
PstI	CTGCAG	1 cut(s)	870
PsuI	RGATCY	2 cut(s)	220, 745
RseI	CAYNNNNRTG	3 cut(s)	306, 312, 500
SapI	GCTCTTC	1 cut(s)	722
SaqAI	TTAA	5 cut(s)	237, 261, 473, 756, 888
SatI	GCNGC	3 cut(s)	282, 480, 849
Sau3AI	GATC	4 cut(s)	79, 220, 745, 800
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	3 cut(s)	322, 481, 811
SfcI	CTRYAG	2 cut(s)	271, 866
SfuI	TTCGAA	1 cut(s)	1042
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	3 cut(s)	306, 312, 500
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	147, 558, 1038, 1054, 1063
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	3 cut(s)	375, 564, 987
TaaI	ACNGT	2 cut(s)	314, 499
TaqI	TCGA	3 cut(s)	432, 726, 1042
TasI	AATT	5 cut(s)	147, 558, 1038, 1054, 1063
TfiI	GAWTC	2 cut(s)	4, 110
Tru1I	TTAA	5 cut(s)	237, 261, 473, 756, 888
Tru9I	TTAA	5 cut(s)	237, 261, 473, 756, 888
TscAI	CASTG	6 cut(s)	24, 128, 396, 502, 943, 987
TseFI	GTSAC	1 cut(s)	934
TseI	GCWGC	3 cut(s)	281, 479, 848
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	5 cut(s)	17, 255, 609, 681, 1044
TspRI	CASTG	6 cut(s)	24, 128, 396, 502, 943, 987
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	512
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	1 cut(s)	1038
XcmI	CCANNNNNNNNNTGG	1 cut(s)	994
XmnI	GAANNNNTTC	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.