Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Forward (+)

22169246 .. 22170815

Gene Structure 1570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAATTCCATGGTTTCCTTGCTCTTAGTTCTTCTTCTTGTTGTTCAATTAAATGCTTCTTCATCTTACCCAGAACACGATCACGATCGCCATGGTGAAGAAACAGATGAGTCCTGGGAGGGAGCCACAACTCTAACTCTAACACTTCCAACAATATCAGACGACTTGCCCTTTGGAGAGTTTCTTTCCAATTCCTACTATCACAAGAGTTGTCCAGACCTTGAAGGTATTCTCAGTAGGAAGGTGAAGCAATGGCTTAAGGAGGATTACAGCCTAGCAGCTGCCGTCATGAGGTTGCACTTCCATGACTGTGCCATCAGGGGATGTGATGCCTCAATCTTATTAAACCATGAAGGAAGTGAGAAGGAAGGCAAGGCCAGCAAGACACTGAGAGGGTTTGAAGTGATTGATGATATCAAGGCAGAGGTTGAGAAGAAGTGCCCAAAAACAGTTTCTTGTGCAGACATTTTGACTGCGGCTGCAAGAGATGCTACTGTTCAAGTTGGAGGTCCATATTGGGCAGTCCCCTATGGGAGGAAAGATGGAAAAGTTTCGATTGCTAAGGAAACTGAGATGGTTCCCATGGGTCACGAAGACATAACTAGTTTACTTGAGATTTTTCAATCACAGGGCTTGAATGTGGTTGACTTGGTTGTTCTCTCAGGGGCACACACCATAGGAAGGTCTTCATGTGAATCCGTACAACACAGGCTCTTTAACTTCAGTGGAACTGGCAAGCCTGATCGATCCCTTGATGCGCAGTACTTGAGCTACTTGGAAAGAAAATGTAGATGGGCATCAGACTATGCTGATCTTGATGCTGTAACTCCACATAAATTTGACACTGCATACTACATGAATCTGCAGAAGAATATGGGACTTTTATCCACAGATCAAATGTTGTATTCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

305

Amino Acids

33.82

Weight (kDa)

5.28

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	80 - 303	5e-76	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	759
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	1 cut(s)	741
AcsI	RAATTY	2 cut(s)	4, 836
AcuI	CTGAAG	1 cut(s)	706
AfaI	GTAC	2 cut(s)	702, 764
AfiI	CCNNNNNNNGG	3 cut(s)	291, 534, 681
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	6 cut(s)	47, 224, 401, 500, 623, 637
AhlI	ACTAGT	1 cut(s)	602
AjnI	CCWGG	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	2 cut(s)	436, 468
AluBI	AGCT	2 cut(s)	281, 771
AluI	AGCT	2 cut(s)	281, 771
AlwI	GGATC	1 cut(s)	741
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	3 cut(s)	278, 281, 479
ApoI	RAATTY	2 cut(s)	4, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	3 cut(s)	228, 550, 685
AspLEI	GCGC	1 cut(s)	760
AspS9I	GGNCC	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	107, 256
AvaII	GGWCC	1 cut(s)	509
BaeGI	GKGCMC	2 cut(s)	443, 670
BbsI	GAAGAC	2 cut(s)	600, 678
BbvI	GCAGC	3 cut(s)	268, 290, 466
BccI	CCATC	4 cut(s)	323, 536, 568, 786
BceAI	ACGGC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	115
BcuI	ACTAGT	1 cut(s)	602
BfaI	CTAG	3 cut(s)	275, 603, 913
BfmI	CTRYAG	1 cut(s)	863
BfrI	CTTAAG	1 cut(s)	257
BisI	GCNGC	4 cut(s)	279, 282, 477, 480
BlsI	GCNGC	4 cut(s)	280, 283, 478, 481
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	2 cut(s)	124, 579
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	5 cut(s)	319, 478, 745, 806, 808
BpiI	GAAGAC	2 cut(s)	600, 678
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	632, 787
Bsa29I	ATCGAT	1 cut(s)	745
BsaBI	GATNNNNATC	2 cut(s)	84, 796
BsaJI	CCNNGG	4 cut(s)	9, 91, 114, 582
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 534, 681
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	1 cut(s)	257
Bse8I	GATNNNNATC	2 cut(s)	84, 796
BseBI	CCWGG	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	745
BseDI	CCNNGG	4 cut(s)	9, 91, 114, 582
BseGI	GGATG	1 cut(s)	329
BseJI	GATNNNNATC	2 cut(s)	84, 796
BseLI	CCNNNNNNNGG	3 cut(s)	291, 534, 681
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	4 cut(s)	247, 380, 561, 675
BseNI	ACTGG	1 cut(s)	736
BseSI	GKGCMC	2 cut(s)	443, 670
BseXI	GCAGC	3 cut(s)	268, 290, 466
BsgI	GTGCAG	1 cut(s)	480
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	745
BsiEI	CGRYCG	1 cut(s)	88
BslFI	GGGAC	2 cut(s)	509, 891
BslI	CCNNNNNNNGG	3 cut(s)	291, 534, 681
BsmFI	GGGAC	2 cut(s)	509, 891
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	443, 670
Bsp143I	GATC	6 cut(s)	79, 85, 742, 746, 811, 892
Bsp19I	CCATGG	3 cut(s)	9, 91, 582
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	4 cut(s)	246, 381, 562, 674
BspDI	ATCGAT	1 cut(s)	745
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	124, 579
BspMAI	CTGCAG	1 cut(s)	867
BspPI	GGATC	1 cut(s)	741
BspTI	CTTAAG	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	736
BssECI	CCNNGG	4 cut(s)	9, 91, 114, 582
BssMI	GATC	6 cut(s)	79, 85, 742, 746, 811, 892
BssT1I	CCWWGG	3 cut(s)	9, 91, 582
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	3 cut(s)	311, 451, 496
BstAFI	CTTAAG	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	379, 737
BstDEI	CTNAG	6 cut(s)	25, 233, 389, 561, 570, 661
BstDSI	CCRYGG	3 cut(s)	9, 91, 582
BstENI	CCTNNNNNAGG	1 cut(s)	532
BstF5I	GGATG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	760
BstKTI	GATC	6 cut(s)	82, 88, 745, 749, 814, 895
BstMBI	GATC	6 cut(s)	79, 85, 742, 746, 811, 892
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 488
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	863
BstSLI	GKGCMC	2 cut(s)	443, 670
BstV1I	GCAGC	3 cut(s)	268, 290, 466
BstV2I	GAAGAC	2 cut(s)	600, 678
Bsu15I	ATCGAT	1 cut(s)	745
BsuRI	GGCC	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	745
BtgI	CCRYGG	3 cut(s)	9, 91, 582
BtsCI	GGATG	1 cut(s)	329
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	3 cut(s)	386, 730, 843
Cac8I	GCNNGC	2 cut(s)	379, 737
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	760
Cfr13I	GGNCC	1 cut(s)	509
ClaI	ATCGAT	1 cut(s)	745
Csp6I	GTAC	2 cut(s)	701, 763
CviAII	CATG	8 cut(s)	10, 92, 289, 305, 350, 583, 690, 856
CviQI	GTAC	2 cut(s)	701, 763
DdeI	CTNAG	6 cut(s)	25, 233, 389, 561, 570, 661
DpnI	GATC	6 cut(s)	81, 87, 744, 748, 813, 894
DpnII	GATC	6 cut(s)	79, 85, 742, 746, 811, 892
Eco130I	CCWWGG	3 cut(s)	9, 91, 582
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	706
EcoNI	CCTNNNNNAGG	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	3 cut(s)	9, 91, 582
ErhI	CCWWGG	3 cut(s)	9, 91, 582
FaeI	CATG	8 cut(s)	13, 95, 292, 308, 353, 586, 693, 859
FaqI	GGGAC	2 cut(s)	509, 891
FatI	CATG	8 cut(s)	9, 91, 288, 304, 349, 582, 689, 855
Fnu4HI	GCNGC	4 cut(s)	279, 282, 477, 480
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	4 cut(s)	279, 282, 477, 480
FspBI	CTAG	3 cut(s)	275, 603, 913
FspI	TGCGCA	1 cut(s)	759
GlaI	GCGC	1 cut(s)	759
GluI	GCNGC	4 cut(s)	279, 282, 477, 480
HaeIII	GGCC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	760
Hin1II	CATG	8 cut(s)	13, 95, 292, 308, 353, 586, 693, 859
Hin6I	GCGC	1 cut(s)	758
HinP1I	GCGC	1 cut(s)	758
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	3 cut(s)	110, 695, 859
HphI	GGTGA	2 cut(s)	107, 256
Hpy166II	GTNNAC	2 cut(s)	608, 646
Hpy188I	TCNGA	2 cut(s)	160, 802
Hpy188III	TCNNGA	5 cut(s)	83, 215, 289, 590, 815
Hpy8I	GTNNAC	2 cut(s)	608, 646
HpyAV	CCTTC	6 cut(s)	218, 235, 347, 358, 362, 675
HpyCH4III	ACNGT	3 cut(s)	311, 451, 496
HpyCH4V	TGCA	5 cut(s)	298, 461, 482, 848, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 488
HpyF3I	CTNAG	6 cut(s)	25, 233, 389, 561, 570, 661
Hsp92II	CATG	8 cut(s)	13, 95, 292, 308, 353, 586, 693, 859
HspAI	GCGC	1 cut(s)	758
Kzo9I	GATC	6 cut(s)	79, 85, 742, 746, 811, 892
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	3 cut(s)	268, 290, 466
LweI	GCATC	5 cut(s)	319, 478, 745, 806, 808
MaeI	CTAG	3 cut(s)	275, 603, 913
MaeIII	GTNAC	2 cut(s)	587, 823
MalI	GATC	6 cut(s)	81, 87, 744, 748, 813, 894
MboI	GATC	6 cut(s)	79, 85, 742, 746, 811, 892
MboII	GAAGA	8 cut(s)	23, 26, 51, 110, 445, 605, 678, 880
MhlI	GDGCHC	2 cut(s)	443, 670
MluCI	AATT	4 cut(s)	4, 47, 190, 836
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	173, 484
MnlI	CCTC	8 cut(s)	112, 256, 285, 343, 386, 418, 500, 528
MroXI	GAANNNNTTC	3 cut(s)	228, 550, 685
MseI	TTAA	4 cut(s)	50, 258, 344, 717
MslI	CAYNNNNRTG	2 cut(s)	303, 309
MspA1I	CMGCKG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	378, 488
NcoI	CCATGG	3 cut(s)	9, 91, 582
NdeII	GATC	6 cut(s)	79, 85, 742, 746, 811, 892
NlaIII	CATG	8 cut(s)	13, 95, 292, 308, 353, 586, 693, 859
NlaIV	GGNNCC	2 cut(s)	124, 579
NmuCI	GTSAC	1 cut(s)	587
NsbI	TGCGCA	1 cut(s)	759
PagI	TCATGA	1 cut(s)	288
PdmI	GAANNNNTTC	3 cut(s)	228, 550, 685
PfeI	GAWTC	2 cut(s)	695, 859
PkrI	GCNGC	4 cut(s)	280, 283, 478, 481
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	124, 579
PspPI	GGNCC	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	867
PvuI	CGATCG	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	2 cut(s)	702, 764
RsaNI	GTAC	2 cut(s)	701, 763
RseI	CAYNNNNRTG	2 cut(s)	303, 309
SaqAI	TTAA	4 cut(s)	50, 258, 344, 717
SatI	GCNGC	4 cut(s)	279, 282, 477, 480
Sau3AI	GATC	6 cut(s)	79, 85, 742, 746, 811, 892
Sau96I	GGNCC	1 cut(s)	509
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	443, 670
SetI	ASST	9 cut(s)	222, 229, 246, 283, 296, 429, 511, 686, 773
SfaNI	GCATC	5 cut(s)	319, 478, 745, 806, 808
SfcI	CTRYAG	1 cut(s)	863
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	2 cut(s)	303, 309
SmlI	CTYRAG	3 cut(s)	257, 611, 766
SmoI	CTYRAG	3 cut(s)	257, 611, 766
SpeI	ACTAGT	1 cut(s)	602
Sse9I	AATT	4 cut(s)	4, 47, 190, 836
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	3 cut(s)	275, 603, 913
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	3 cut(s)	9, 91, 582
TaaI	ACNGT	3 cut(s)	311, 451, 496
TaqI	TCGA	2 cut(s)	554, 745
TasI	AATT	4 cut(s)	4, 47, 190, 836
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	695, 859
Tru1I	TTAA	4 cut(s)	50, 258, 344, 717
Tru9I	TTAA	4 cut(s)	50, 258, 344, 717
TscAI	CASTG	3 cut(s)	393, 730, 850
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	3 cut(s)	278, 281, 479
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	5 cut(s)	17, 51, 366, 678, 872
TspGWI	ACGGA	1 cut(s)	688
TspRI	CASTG	3 cut(s)	393, 730, 850
Vha464I	CTTAAG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	509
XagI	CCTNNNNNAGG	1 cut(s)	532
XapI	RAATTY	2 cut(s)	4, 836
XmnI	GAANNNNTTC	3 cut(s)	228, 550, 685
XspI	CTAG	3 cut(s)	275, 603, 913
ZrmI	AGTACT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.