Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Reverse (-)

17064458 .. 17066456

Gene Structure 1999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032623

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAATCCCATAGTTTATTCTTTGCTCTTTGTCCTCCTCGTTGTTGTTCAGTTGAGTCCAACCTTATCATACCCAGCAGATGATCACCATCATTACGACGACGATGATAATGAATCACCTGAACACTGGAAGGGTGCCACACCTCTAACGGTTCCGACCATTTTAGAGAACTTACCATTTGGGGATTTTCTATCCTTTGCTCACTACCACAGGAGTTGTCCAGACCTTGAAGGCATTATCAATAGGAAATTGAAGCAATGGCTTAAGCAGGACTACACTATAGCTGCTAGTCTCATGAGGTTGCACTTCCATGACTGTGCCATCAGGGGATGTGATGCCTCCATCTTATTAAACCATGAGGGAAGTGAGAGAACTGCCTTGGCCAGCAAGACACTAAGAGGGTTTGAAGTGATAGATGATATCAAAGCAGAGGTCGAGAAGAAGTGCCCCAAAACAGTATCTTGTGCAGATATCTTGACTGCAGCTACAAGAGATGCCACTGTTATGGTCGGTGGTCCATACTGGATGGTCCCCTATGGTCGGAAGGATGGGCGAGTTTCAATTGCCAAGGAAGCTGAATGGGTGCCGACGGGTCATGAAAACATTACTGCTTTGGTTGAGTTTTTCCAATTTCAGGGCTTGAATGTGCTTGACTTGGTTGTTCTCTCAGGGGCACACACCATAGGAAGGTCTTCATGTGCTTCCATACAAAACAGGCTCTTTAACTTCGATGGATATGGGAACTCTGATCCATCCATTGATGAAAAATACTTGAACTTCTTGAAAAGAAAATGCAGATGGGGATCAGACTATGTTGACCTTGATGCTACAACTCCAAAAACCTTTGACACTGCATACTACTCGAATCTGCAGAGGAAGATGGGACTTCTCAAAACAGATCAATTGTTGTATTCTGATACAAGGACTTCACCACTTGTCACTGCTTTAGCTCACCAGCCCGCAGTCTTCTACCACCAGTTTGGAGTCTCCATGGCCAAACTGGGGAATGTTCAAGTCCTCACAGGCCAAGATGAAGGGGAAATTCGAACCAACTGCAATTTTGTCAACTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

359

Amino Acids

40.18

Weight (kDa)

5.79

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	81 - 318	1.3e-80	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	134, 583
AciI	CCGC	1 cut(s)	960
AclWI	GGATC	2 cut(s)	743, 811
AcoI	YGGCCR	2 cut(s)	381, 993
AcsI	RAATTY	1 cut(s)	1041
AfiI	CCNNNNNNNGG	4 cut(s)	540, 634, 687, 1002
AflII	CTTAAG	1 cut(s)	263
AgsI	TTSAA	8 cut(s)	230, 253, 407, 561, 643, 775, 784, 1013
AluBI	AGCT	4 cut(s)	284, 485, 575, 950
AluI	AGCT	4 cut(s)	284, 485, 575, 950
Alw26I	GTCTC	2 cut(s)	296, 991
AlwI	GGATC	2 cut(s)	743, 811
AoxI	GGCC	3 cut(s)	381, 993, 1024
ApeKI	GCWGC	2 cut(s)	284, 482
ApoI	RAATTY	1 cut(s)	1041
ArsI	GACNNNNNNTTYG	2 cut(s)	417, 449
Asp700I	GAANNNNTTC	1 cut(s)	691
AspS9I	GGNCC	2 cut(s)	515, 529
AsuHPI	GGTGA	4 cut(s)	77, 108, 921, 944
AsuII	TTCGAA	1 cut(s)	1045
AvaII	GGWCC	2 cut(s)	515, 529
BaeGI	GKGCMC	2 cut(s)	449, 676
BalI	TGGCCA	2 cut(s)	383, 995
BanI	GGYRCC	2 cut(s)	134, 583
BbsI	GAAGAC	2 cut(s)	684, 958
BbvI	GCAGC	2 cut(s)	271, 494
BccI	CCATC	9 cut(s)	96, 329, 350, 520, 542, 725, 760, 792, 874
BcgI	CGANNNNNNTGC	4 cut(s)	843, 877, 1035, 1069
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	296, 991
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	3 cut(s)	279, 480, 869
BfrI	CTTAAG	1 cut(s)	263
BisI	GCNGC	2 cut(s)	285, 483
BlsI	GCNGC	2 cut(s)	286, 484
Bme18I	GGWCC	2 cut(s)	515, 529
BmgT120I	GGNCC	2 cut(s)	515, 529
BmiI	GGNNCC	4 cut(s)	136, 153, 531, 585
BmrI	ACTGGG	1 cut(s)	1010
BmsI	GCATC	3 cut(s)	325, 484, 814
BmuI	ACTGGG	1 cut(s)	1010
BpiI	GAAGAC	2 cut(s)	684, 958
Bpu14I	TTCGAA	1 cut(s)	1045
BsaBI	GATNNNNATC	2 cut(s)	87, 802
BsaJI	CCNNGG	3 cut(s)	378, 567, 990
Bsc4I	CCNNNNNNNGG	4 cut(s)	540, 634, 687, 1002
Bse1I	ACTGG	4 cut(s)	131, 527, 976, 1005
Bse3DI	GCAATG	1 cut(s)	263
Bse8I	GATNNNNATC	2 cut(s)	87, 802
BseDI	CCNNGG	3 cut(s)	378, 567, 990
BseGI	GGATG	4 cut(s)	335, 531, 553, 752
BseJI	GATNNNNATC	2 cut(s)	87, 802
BseLI	CCNNNNNNNGG	4 cut(s)	540, 634, 687, 1002
BseMI	GCAATG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	4 cut(s)	131, 527, 976, 1005
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	2 cut(s)	449, 676
BseXI	GCAGC	2 cut(s)	271, 494
BseYI	CCCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	3 cut(s)	383, 995, 1026
BshNI	GGYRCC	2 cut(s)	134, 583
BslFI	GGGAC	2 cut(s)	515, 897
BslI	CCNNNNNNNGG	4 cut(s)	540, 634, 687, 1002
BsmAI	GTCTC	2 cut(s)	296, 991
BsmFI	GGGAC	2 cut(s)	515, 897
BsnI	GGCC	3 cut(s)	383, 995, 1026
Bsp119I	TTCGAA	1 cut(s)	1045
Bsp1286I	GDGCHC	2 cut(s)	449, 676
Bsp143I	GATC	4 cut(s)	82, 748, 803, 898
Bsp19I	CCATGG	1 cut(s)	990
BspACI	CCGC	1 cut(s)	960
BspANI	GGCC	3 cut(s)	383, 995, 1026
BspCNI	CTCAG	1 cut(s)	680
BspHI	TCATGA	2 cut(s)	294, 595
BspLI	GGNNCC	4 cut(s)	136, 153, 531, 585
BspMAI	CTGCAG	2 cut(s)	484, 873
BspPI	GGATC	2 cut(s)	743, 811
BspT104I	TTCGAA	1 cut(s)	1045
BspT107I	GGYRCC	2 cut(s)	134, 583
BspTI	CTTAAG	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	263
BsrI	ACTGG	4 cut(s)	131, 527, 976, 1005
BssECI	CCNNGG	3 cut(s)	378, 567, 990
BssMI	GATC	4 cut(s)	82, 748, 803, 898
BssT1I	CCWWGG	3 cut(s)	378, 567, 990
Bst4CI	ACNGT	4 cut(s)	151, 317, 457, 502
BstAFI	CTTAAG	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	1045
BstC8I	GCNNGC	2 cut(s)	385, 960
BstDEI	CTNAG	2 cut(s)	395, 667
BstDSI	CCRYGG	1 cut(s)	990
BstF5I	GGATG	4 cut(s)	335, 531, 553, 752
BstKTI	GATC	4 cut(s)	85, 751, 806, 901
BstMAI	GTCTC	2 cut(s)	296, 991
BstMBI	GATC	4 cut(s)	82, 748, 803, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstSFI	CTRYAG	3 cut(s)	279, 480, 869
BstSLI	GKGCMC	2 cut(s)	449, 676
BstV1I	GCAGC	2 cut(s)	271, 494
BstV2I	GAAGAC	2 cut(s)	684, 958
BstXI	CCANNNNNNTGG	2 cut(s)	505, 980
BsuRI	GGCC	3 cut(s)	383, 995, 1026
BtgI	CCRYGG	1 cut(s)	990
BtsCI	GGATG	4 cut(s)	335, 531, 553, 752
BtsI	GCAGTG	2 cut(s)	849, 939
BtsIMutI	CAGTG	4 cut(s)	124, 498, 849, 939
Cac8I	GCNNGC	2 cut(s)	385, 960
CciI	TCATGA	2 cut(s)	294, 595
Cfr13I	GGNCC	2 cut(s)	515, 529
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	6 cut(s)	295, 311, 356, 596, 696, 991
DdeI	CTNAG	2 cut(s)	395, 667
DpnI	GATC	4 cut(s)	84, 750, 805, 900
DpnII	GATC	4 cut(s)	82, 748, 803, 898
EaeI	YGGCCR	2 cut(s)	381, 993
Eco130I	CCWWGG	3 cut(s)	378, 567, 990
Eco32I	GATATC	2 cut(s)	421, 472
Eco47I	GGWCC	2 cut(s)	515, 529
EcoRV	GATATC	2 cut(s)	421, 472
EcoT14I	CCWWGG	3 cut(s)	378, 567, 990
ErhI	CCWWGG	3 cut(s)	378, 567, 990
FaeI	CATG	6 cut(s)	298, 314, 359, 599, 699, 994
FaqI	GGGAC	2 cut(s)	515, 897
FatI	CATG	6 cut(s)	294, 310, 355, 595, 695, 990
FauI	CCCGC	1 cut(s)	967
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	285, 483
FokI	GGATG	4 cut(s)	342, 538, 560, 739
Fsp4HI	GCNGC	2 cut(s)	285, 483
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	2 cut(s)	285, 483
GsaI	CCCAGC	1 cut(s)	77
HaeIII	GGCC	3 cut(s)	383, 995, 1026
Hin1II	CATG	6 cut(s)	298, 314, 359, 599, 699, 994
HincII	GTYRAC	2 cut(s)	817, 1066
HindII	GTYRAC	2 cut(s)	817, 1066
HinfI	GANTC	5 cut(s)	4, 55, 113, 865, 984
HphI	GGTGA	4 cut(s)	77, 108, 921, 944
Hpy166II	GTNNAC	2 cut(s)	817, 1066
Hpy188I	TCNGA	5 cut(s)	156, 543, 748, 808, 916
Hpy188III	TCNNGA	6 cut(s)	221, 295, 436, 475, 596, 781
Hpy8I	GTNNAC	2 cut(s)	817, 1066
Hpy99I	CGWCG	3 cut(s)	101, 104, 592
HpyAV	CCTTC	5 cut(s)	124, 224, 538, 681, 1028
HpyCH4III	ACNGT	4 cut(s)	151, 317, 457, 502
HpyCH4V	TGCA	7 cut(s)	304, 467, 482, 795, 854, 871, 1056
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	2 cut(s)	395, 667
Hsp92II	CATG	6 cut(s)	298, 314, 359, 599, 699, 994
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	82, 748, 803, 898
Lsp1109I	GCAGC	2 cut(s)	271, 494
LweI	GCATC	3 cut(s)	325, 484, 814
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	937
MalI	GATC	4 cut(s)	84, 750, 805, 900
MboI	GATC	4 cut(s)	82, 748, 803, 898
MboII	GAAGA	4 cut(s)	451, 684, 889, 958
MfeI	CAATTG	2 cut(s)	561, 902
MhlI	GDGCHC	2 cut(s)	449, 676
MlsI	TGGCCA	2 cut(s)	383, 995
MluCI	AATT	6 cut(s)	248, 561, 629, 902, 1041, 1057
MluNI	TGGCCA	2 cut(s)	383, 995
MlyI	GAGTC	2 cut(s)	64, 993
MmeI	TCCRAC	3 cut(s)	83, 179, 521
Mox20I	TGGCCA	2 cut(s)	383, 995
MroXI	GAANNNNTTC	1 cut(s)	691
MscI	TGGCCA	2 cut(s)	383, 995
MseI	TTAA	3 cut(s)	264, 350, 723
MslI	CAYNNNNRTG	3 cut(s)	309, 315, 503
Msp20I	TGGCCA	2 cut(s)	383, 995
MspCI	CTTAAG	1 cut(s)	263
MunI	CAATTG	2 cut(s)	561, 902
MwoI	GCNNNNNNNGC	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	990
NdeII	GATC	4 cut(s)	82, 748, 803, 898
NlaIII	CATG	6 cut(s)	298, 314, 359, 599, 699, 994
NlaIV	GGNNCC	4 cut(s)	136, 153, 531, 585
NmuCI	GTSAC	1 cut(s)	937
NspV	TTCGAA	1 cut(s)	1045
PagI	TCATGA	2 cut(s)	294, 595
PdmI	GAANNNNTTC	1 cut(s)	691
PfeI	GAWTC	3 cut(s)	4, 113, 865
PkrI	GCNGC	2 cut(s)	286, 484
PleI	GAGTC	2 cut(s)	63, 992
PpsI	GAGTC	2 cut(s)	63, 992
PspFI	CCCAGC	1 cut(s)	73
PspN4I	GGNNCC	4 cut(s)	136, 153, 531, 585
PspPI	GGNCC	2 cut(s)	515, 529
PstI	CTGCAG	2 cut(s)	484, 873
RseI	CAYNNNNRTG	3 cut(s)	309, 315, 503
SaqAI	TTAA	3 cut(s)	264, 350, 723
SatI	GCNGC	2 cut(s)	285, 483
Sau3AI	GATC	4 cut(s)	82, 748, 803, 898
Sau96I	GGNCC	2 cut(s)	515, 529
SchI	GAGTC	2 cut(s)	64, 993
SduI	GDGCHC	2 cut(s)	449, 676
SfaNI	GCATC	3 cut(s)	325, 484, 814
SfcI	CTRYAG	3 cut(s)	279, 480, 869
SfuI	TTCGAA	1 cut(s)	1045
SinI	GGWCC	2 cut(s)	515, 529
SmiMI	CAYNNNNRTG	3 cut(s)	309, 315, 503
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	6 cut(s)	248, 561, 629, 902, 1041, 1057
SsiI	CCGC	1 cut(s)	960
SspMI	CTAG	1 cut(s)	288
StyI	CCWWGG	3 cut(s)	378, 567, 990
TaaI	ACNGT	4 cut(s)	151, 317, 457, 502
TaqI	TCGA	4 cut(s)	435, 729, 863, 1045
TasI	AATT	6 cut(s)	248, 561, 629, 902, 1041, 1057
TfiI	GAWTC	3 cut(s)	4, 113, 865
Tru1I	TTAA	3 cut(s)	264, 350, 723
Tru9I	TTAA	3 cut(s)	264, 350, 723
TscAI	CASTG	4 cut(s)	131, 505, 856, 946
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	2 cut(s)	284, 482
Tsp45I	GTSAC	1 cut(s)	937
TspDTI	ATGAA	6 cut(s)	17, 126, 612, 684, 777, 1047
TspRI	CASTG	4 cut(s)	131, 505, 856, 946
Vha464I	CTTAAG	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	515, 529
XapI	RAATTY	1 cut(s)	1041
XcmI	CCANNNNNNNNNTGG	1 cut(s)	997
XmnI	GAANNNNTTC	1 cut(s)	691
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.