Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Forward (+)

6902032 .. 6903278

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAAGTTGTGCATTTCTGCATTGTCTGTTGTTCTTGTTCTGTTGTTTGTATCTGCAGCACCGCAATTAGCAGCTAAAAATGTAAACAAGCCCCGGGCCACAGTTGTGCGTGCGGCGGATCTTCTGTCTTTCGACCACTATCTTAAAACATGCCCCCAAGCTGAGGGCATCATTCAGCAAAAAACGGGAGACTGGATCCAGAAGGATTTCACTTTGGCTGCTAGCATCATTCGCTTGCACTTCCACGACTGCGCTGTGAGAGGCTGTGATGCATCAATTTTGCTTAACCATCAAGGGAGCGAGAGGAGAGCTTTTGCCAGCAGGACACTCAGAGGTTTTCAAGTAATAGATGACATCAAGGCAGAGCTTGAGAGGCAATGCCCTAAAATTGTCTCCTGTGCCGACATTCTCACTTCTGCAGCTAGAGATGCCACCATTATAGCTGGAGGTCCATTTTGGCAAGTCCCGTTCGGGCGTAAAGATGGACGGATTTCAATTTCCAGGGAAGCTGACTCTGTTCCTCAGGGCCATGAAAATGTAACTGCACTGATTGAGTTTTTCCAAGTACGTGGCTTGAACATGCTTGATTTGGTCACCCTTTCAGGAGCGCACACCATTGGTAGAAGTTCTTGCTCTTCCTTCAAGAACAGGCTCTCAAACTTCAATGGAACCAGAAAGCCTGATCCTTCACTTAATTCCATGTATTTGAACAACTTCTTGAAGAAGAAATGCCAAAAAGACTTGGACTTGATTTATCTTGATGCCATAACTCCGAAGACATTCGACACGCAGTTCTACTCGAATCTTCACAAGAAGTTGGGGTTGCTATCAACAGATCAGTTGCTCAAGTCAGATGTAAGAACTGGTCCATTTGTTGCTGCATTGGCATCTCAGCCCTCCCTTTTTGAGAGCCAGTTTGCAGTGTCCATGGTGAAGCTTGGAAATGTCCAAGTTCTTACAAGACCAAATGAAGGTGAAATCCGAGTGAACTGCAATTTTGTCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

337

Amino Acids

37.07

Weight (kDa)

9.22

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	62, 113, 116
AclWI	GGATC	4 cut(s)	126, 190, 203, 677
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	2 cut(s)	163, 971
AgsI	TTSAA	7 cut(s)	341, 495, 577, 643, 664, 709, 721
AjnI	CCWGG	1 cut(s)	500
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	8 cut(s)	74, 161, 311, 367, 422, 443, 509, 937
AluI	AGCT	8 cut(s)	74, 161, 311, 367, 422, 443, 509, 937
Alw26I	GTCTC	2 cut(s)	183, 397
AlwI	GGATC	4 cut(s)	126, 190, 203, 677
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	2 cut(s)	96, 526
ApeKI	GCWGC	5 cut(s)	56, 71, 218, 419, 878
Asp700I	GAANNNNTTC	3 cut(s)	206, 713, 779
AspLEI	GCGC	2 cut(s)	254, 610
AspS9I	GGNCC	4 cut(s)	96, 449, 526, 866
AsuC2I	CCSGG	2 cut(s)	94, 95
AsuHPI	GGTGA	3 cut(s)	586, 943, 986
AsuNHI	GCTAGC	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	2 cut(s)	449, 866
AxyI	CCTNAGG	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	782
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	5 cut(s)	68, 83, 205, 431, 865
BccI	CCATC	2 cut(s)	297, 476
BcgI	CGANNNNNNTGC	2 cut(s)	972, 1006
BciT130I	CCWGG	1 cut(s)	502
BcnI	CCSGG	2 cut(s)	94, 95
BcoDI	GTCTC	2 cut(s)	183, 397
BfaI	CTAG	2 cut(s)	222, 423
BfmI	CTRYAG	2 cut(s)	54, 417
BisI	GCNGC	6 cut(s)	57, 72, 114, 219, 420, 879
BlsI	GCNGC	6 cut(s)	58, 73, 115, 220, 421, 880
Bme1390I	CCNGG	3 cut(s)	94, 95, 502
Bme18I	GGWCC	2 cut(s)	449, 866
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	4 cut(s)	96, 449, 526, 866
BmiI	GGNNCC	2 cut(s)	197, 670
BmrFI	CCNGG	3 cut(s)	94, 95, 502
BmsI	GCATC	7 cut(s)	177, 234, 259, 281, 418, 751, 896
BmtI	GCTAGC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	782
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	2 cut(s)	389, 830
BpuMI	CCSGG	2 cut(s)	94, 95
BsaAI	YACGTR	1 cut(s)	569
BsaJI	CCNNGG	4 cut(s)	92, 93, 501, 927
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 971
Bse1I	ACTGG	3 cut(s)	197, 868, 913
Bse21I	CCTNAGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	4 cut(s)	92, 93, 501, 927
BseLI	CCNNNNNNNGG	2 cut(s)	163, 971
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	4 cut(s)	153, 343, 536, 905
BseNI	ACTGG	3 cut(s)	197, 868, 913
BseRI	GAGGAG	1 cut(s)	319
BseXI	GCAGC	5 cut(s)	68, 83, 205, 431, 865
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	98, 528
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	163, 971
BsmAI	GTCTC	2 cut(s)	183, 397
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	98, 528
BsoBI	CYCGRG	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	118, 195, 682, 835
Bsp19I	CCATGG	1 cut(s)	927
BspACI	CCGC	3 cut(s)	62, 113, 116
BspANI	GGCC	2 cut(s)	98, 528
BspCNI	CTCAG	4 cut(s)	154, 342, 535, 904
BspLI	GGNNCC	2 cut(s)	197, 670
BspMAI	CTGCAG	2 cut(s)	58, 421
BspOI	GCTAGC	1 cut(s)	225
BspPI	GGATC	4 cut(s)	126, 190, 203, 677
BspQI	GCTCTTC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	383
BsrI	ACTGG	3 cut(s)	197, 868, 913
BssECI	CCNNGG	4 cut(s)	92, 93, 501, 927
BssMI	GATC	4 cut(s)	118, 195, 682, 835
BssT1I	CCWWGG	1 cut(s)	927
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	640
BstBAI	YACGTR	1 cut(s)	569
BstC8I	GCNNGC	4 cut(s)	111, 223, 236, 319
BstDEI	CTNAG	4 cut(s)	162, 329, 522, 891
BstDSI	CCRYGG	1 cut(s)	927
BstEII	GGTNACC	1 cut(s)	592
BstHHI	GCGC	2 cut(s)	254, 610
BstKTI	GATC	4 cut(s)	121, 198, 685, 838
BstMAI	GTCTC	2 cut(s)	183, 397
BstMBI	GATC	4 cut(s)	118, 195, 682, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	231, 373, 428, 884
BstNI	CCWGG	1 cut(s)	502
BstNSI	RCATGY	2 cut(s)	153, 583
BstPI	GGTNACC	1 cut(s)	592
BstSCI	CCNGG	3 cut(s)	92, 93, 500
BstSFI	CTRYAG	2 cut(s)	54, 417
BstV1I	GCAGC	5 cut(s)	68, 83, 205, 431, 865
BstV2I	GAAGAC	1 cut(s)	782
BstX2I	RGATCY	2 cut(s)	118, 195
BstXI	CCANNNNNNTGG	1 cut(s)	569
BstYI	RGATCY	2 cut(s)	118, 195
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	98, 528
BtgI	CCRYGG	1 cut(s)	927
BtsI	GCAGTG	1 cut(s)	927
BtsIMutI	CAGTG	2 cut(s)	545, 927
Cac8I	GCNNGC	4 cut(s)	111, 223, 236, 319
CfoI	GCGC	2 cut(s)	254, 610
Cfr13I	GGNCC	4 cut(s)	96, 449, 526, 866
Cfr9I	CCCGGG	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	5 cut(s)	150, 530, 580, 700, 928
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	4 cut(s)	162, 329, 522, 891
DpnI	GATC	4 cut(s)	120, 197, 684, 837
DpnII	GATC	4 cut(s)	118, 195, 682, 835
Eam1104I	CTCTTC	1 cut(s)	640
EarI	CTCTTC	1 cut(s)	640
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	927
Eco47I	GGWCC	2 cut(s)	449, 866
Eco81I	CCTNAGG	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	927
EcoT22I	ATGCAT	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	927
FaeI	CATG	5 cut(s)	153, 533, 583, 703, 931
FaiI	YATR	7 cut(s)	151, 440, 531, 581, 701, 767, 929
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	5 cut(s)	149, 529, 579, 699, 927
Fnu4HI	GCNGC	6 cut(s)	57, 72, 114, 219, 420, 879
Fsp4HI	GCNGC	6 cut(s)	57, 72, 114, 219, 420, 879
FspBI	CTAG	2 cut(s)	222, 423
GlaI	GCGC	2 cut(s)	253, 609
GluI	GCNGC	6 cut(s)	57, 72, 114, 219, 420, 879
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	98, 528
HapII	CCGG	1 cut(s)	94
HhaI	GCGC	2 cut(s)	254, 610
Hin1II	CATG	5 cut(s)	153, 533, 583, 703, 931
Hin6I	GCGC	2 cut(s)	252, 608
HinP1I	GCGC	2 cut(s)	252, 608
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	2 cut(s)	512, 802
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	3 cut(s)	586, 943, 986
Hpy166II	GTNNAC	2 cut(s)	85, 988
Hpy188I	TCNGA	4 cut(s)	332, 774, 853, 983
Hpy188III	TCNNGA	5 cut(s)	199, 603, 643, 718, 758
Hpy8I	GTNNAC	2 cut(s)	85, 988
HpyAV	CCTTC	4 cut(s)	196, 649, 696, 965
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	568
HpyF10VI	GCNNNNNNNGC	4 cut(s)	231, 373, 428, 884
HpyF3I	CTNAG	4 cut(s)	162, 329, 522, 891
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	5 cut(s)	153, 533, 583, 703, 931
HspAI	GCGC	2 cut(s)	252, 608
Kzo9I	GATC	4 cut(s)	118, 195, 682, 835
LguI	GCTCTTC	1 cut(s)	640
LmnI	GCTCC	2 cut(s)	297, 605
Lsp1109I	GCAGC	5 cut(s)	68, 83, 205, 431, 865
LweI	GCATC	7 cut(s)	177, 234, 259, 281, 418, 751, 896
MaeI	CTAG	2 cut(s)	222, 423
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	2 cut(s)	538, 592
MalI	GATC	4 cut(s)	120, 197, 684, 837
MboI	GATC	4 cut(s)	118, 195, 682, 835
MboII	GAAGA	6 cut(s)	113, 627, 733, 736, 787, 797
MflI	RGATCY	2 cut(s)	118, 195
MluCI	AATT	6 cut(s)	65, 276, 387, 495, 694, 994
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	8 cut(s)	157, 254, 297, 326, 366, 440, 531, 907
Mph1103I	ATGCAT	1 cut(s)	274
MroXI	GAANNNNTTC	3 cut(s)	206, 713, 779
MseI	TTAA	3 cut(s)	144, 285, 693
MslI	CAYNNNNRTG	2 cut(s)	104, 534
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	3 cut(s)	94, 95, 502
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	4 cut(s)	231, 373, 428, 884
NciI	CCSGG	2 cut(s)	94, 95
NcoI	CCATGG	1 cut(s)	927
NdeII	GATC	4 cut(s)	118, 195, 682, 835
NheI	GCTAGC	1 cut(s)	221
NlaIII	CATG	5 cut(s)	153, 533, 583, 703, 931
NlaIV	GGNNCC	2 cut(s)	197, 670
NmuCI	GTSAC	1 cut(s)	592
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	2 cut(s)	153, 583
OliI	CACNNNNGTG	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	640
PdmI	GAANNNNTTC	3 cut(s)	206, 713, 779
PfeI	GAWTC	1 cut(s)	802
PkrI	GCNGC	6 cut(s)	58, 73, 115, 220, 421, 880
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	500
PspEI	GGTNACC	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	197, 670
PspPI	GGNCC	4 cut(s)	96, 449, 526, 866
PstI	CTGCAG	2 cut(s)	58, 421
PsuI	RGATCY	2 cut(s)	118, 195
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
RseI	CAYNNNNRTG	2 cut(s)	104, 534
SapI	GCTCTTC	1 cut(s)	640
SaqAI	TTAA	3 cut(s)	144, 285, 693
SatI	GCNGC	6 cut(s)	57, 72, 114, 219, 420, 879
Sau3AI	GATC	4 cut(s)	118, 195, 682, 835
Sau96I	GGNCC	4 cut(s)	96, 449, 526, 866
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	94, 95, 502
SfaNI	GCATC	7 cut(s)	177, 234, 259, 281, 418, 751, 896
SfcI	CTRYAG	2 cut(s)	54, 417
SinI	GGWCC	2 cut(s)	449, 866
SmaI	CCCGGG	1 cut(s)	95
SmiMI	CAYNNNNRTG	2 cut(s)	104, 534
SmlI	CTYRAG	2 cut(s)	368, 845
SmoI	CTYRAG	2 cut(s)	368, 845
Sse9I	AATT	6 cut(s)	65, 276, 387, 495, 694, 994
SsiI	CCGC	3 cut(s)	62, 113, 116
SspMI	CTAG	2 cut(s)	222, 423
StyD4I	CCNGG	3 cut(s)	92, 93, 500
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	3 cut(s)	132, 783, 800
TasI	AATT	6 cut(s)	65, 276, 387, 495, 694, 994
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	3 cut(s)	144, 285, 693
Tru9I	TTAA	3 cut(s)	144, 285, 693
TscAI	CASTG	2 cut(s)	552, 927
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	5 cut(s)	56, 71, 218, 419, 878
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	3 cut(s)	17, 546, 984
TspGWI	ACGGA	1 cut(s)	502
TspMI	CCCGGG	1 cut(s)	93
TspRI	CASTG	2 cut(s)	552, 927
VpaK11BI	GGWCC	2 cut(s)	449, 866
XceI	RCATGY	2 cut(s)	153, 583
XmaI	CCCGGG	1 cut(s)	93
XmnI	GAANNNNTTC	3 cut(s)	206, 713, 779
XspI	CTAG	2 cut(s)	222, 423
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.