Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Reverse (-)

6667528 .. 6669277

Gene Structure 1750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCTTTCATACTCAAAAGCTCATCAATTCTACTGCATGTGCTTCTAGTCTTTGGAATTTGGGCTTCTCAAGCCTACTGCCGCACATTGCCTGAAGCTGAGGTTAATGTAATGCTAAAGAGGCATCACCAGTGGATGGCTCGTCATGGACGCGCCTACAAGGACCATGTGGAGAAGGAGAAGCGTTTCAAGATATTCAAGGACAATGTGGAGTTCATAGAGTCTTTCAACAGGGGTGGGAATCAGCCTTACAGTCTAAGGATCAATGAATTTGCAGACCAGACTAATGAAGAATTCTTGACCTCGCGCAGTGGATACAATTTTCAGTCTCCAGATCTCATGTCATCATCTGAATCATCATTTAGATATGACAATGTGACTGCAGTCCCATCCAGTATGGATTGGAGGGAGAAGGGAGCTGTCACCCCTGTCAAGGACCAGGGTGACTGTGGATGTTGCTGGGCATTTTCTGCAGTGGCAGCTACAGAAGGCATTACGAAGCTGAAAACAGGGAAGTTGGTGTCTCTTTCTGAGCAACAGCTAGTCGATTGTGACACTCGGAGTGCAGGTTGTCAGGGTGGTCTAATGGATTATGCCTTTAAGTTCATCATCCGCAACAAAGGCCTGGCAGCTCAAGCAAACTACCCTTATCAGGGAGTTGACGGGATTTGCATGAGGAACAGGGAGGAATCACCTGCAGCCAAGATCACAGGCTATGAGGTTGTGCCGAATAATGAGGAGGCTTTGTTGAAGGCCGTGGCGAACCAACCGGTCTCTGTTGCAATTGATGCCAGTGGAATTGCCATGCAGTTTTACTCTAGTGGAGTGTTCACAGGACAATGTGGAAGTCAATTGGATCATGGAGTAACTGCAGTTGGGTATGGAACAAGTGATGATGATGGTACGAAGTTTTGGCTATTGAAAAATTCATGGGGTAGAAGCTGGGGTGAAGATGGGTACATAAGAATCCAAAGAGATGTCAATGTTAGGGGAGGTCTTTGCGGTGTTACGAAGCAAGCTTCCTATCCTACTTTTGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

347

Amino Acids

38.49

Weight (kDa)

6.33

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	42 - 99	8.5e-18	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	129 - 344	5.6e-81	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc36I	ACCTGC	2 cut(s)	557, 703
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	2 cut(s)	153, 307
AciI	CCGC	3 cut(s)	82, 613, 1002
AclWI	GGATC	2 cut(s)	269, 864
AcsI	RAATTY	4 cut(s)	57, 269, 293, 925
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	2 cut(s)	904, 959
AfiI	CCNNNNNNNGG	4 cut(s)	136, 433, 652, 653
AgeI	ACCGGT	1 cut(s)	769
AgsI	TTSAA	5 cut(s)	190, 199, 229, 751, 922
AjnI	CCWGG	2 cut(s)	438, 624
AluBI	AGCT	9 cut(s)	21, 98, 419, 482, 502, 541, 632, 942, 1019
AluI	AGCT	9 cut(s)	21, 98, 419, 482, 502, 541, 632, 942, 1019
Alw26I	GTCTC	3 cut(s)	333, 528, 778
AlwI	GGATC	2 cut(s)	269, 864
AoxI	GGCC	2 cut(s)	622, 753
ApeKI	GCWGC	3 cut(s)	479, 629, 698
ApoI	RAATTY	4 cut(s)	57, 269, 293, 925
AsiGI	ACCGGT	1 cut(s)	769
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	2 cut(s)	155, 309
AspS9I	GGNCC	2 cut(s)	163, 436
AsuHPI	GGTGA	5 cut(s)	119, 415, 455, 684, 959
AvaII	GGWCC	2 cut(s)	163, 436
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	491, 641, 710
BccI	CCATC	4 cut(s)	130, 397, 893, 947
BceAI	ACGGC	1 cut(s)	740
BciT130I	CCWGG	2 cut(s)	440, 626
BciVI	GTATCC	1 cut(s)	308
BcoDI	GTCTC	3 cut(s)	333, 528, 778
BfaI	CTAG	3 cut(s)	47, 542, 819
BfmI	CTRYAG	5 cut(s)	381, 471, 483, 696, 870
BfuAI	ACCTGC	2 cut(s)	557, 703
BfuI	GTATCC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	4 cut(s)	82, 480, 630, 699
BlsI	GCNGC	4 cut(s)	83, 481, 631, 700
Bme1390I	CCNGG	2 cut(s)	440, 626
Bme18I	GGWCC	2 cut(s)	163, 436
BmgT120I	GGNCC	2 cut(s)	163, 436
BmrFI	CCNGG	2 cut(s)	440, 626
BmsI	GCATC	2 cut(s)	133, 778
BoxI	GACNNNNGTC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	54, 618
BsaI	GGTCTC	1 cut(s)	778
BsaJI	CCNNGG	2 cut(s)	439, 756
BsaWI	WCCGGW	1 cut(s)	769
BsaXI	ACNNNNNCTCC	4 cut(s)	553, 583, 731, 761
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 433, 652, 653
Bse118I	RCCGGY	1 cut(s)	769
Bse1I	ACTGG	3 cut(s)	130, 393, 792
Bse3DI	GCAATG	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	440, 626
BseDI	CCNNGG	2 cut(s)	439, 756
BseGI	GGATG	4 cut(s)	141, 389, 458, 609
BseLI	CCNNNNNNNGG	4 cut(s)	136, 433, 652, 653
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	90, 522
BseNI	ACTGG	3 cut(s)	130, 393, 792
BseRI	GAGGAG	1 cut(s)	752
BseXI	GCAGC	3 cut(s)	491, 641, 710
BseYI	CCCAGC	2 cut(s)	459, 942
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	2 cut(s)	153, 307
BshFI	GGCC	2 cut(s)	624, 755
BshTI	ACCGGT	1 cut(s)	769
BsiSI	CCGG	1 cut(s)	770
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	4 cut(s)	136, 433, 652, 653
BsmAI	GTCTC	3 cut(s)	333, 528, 778
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	624, 755
Bso31I	GGTCTC	1 cut(s)	778
Bsp143I	GATC	4 cut(s)	261, 334, 705, 856
BspACI	CCGC	3 cut(s)	82, 613, 1002
BspANI	GGCC	2 cut(s)	624, 755
BspCNI	CTCAG	2 cut(s)	91, 523
BspFNI	CGCG	2 cut(s)	153, 307
BspMAI	CTGCAG	4 cut(s)	385, 475, 700, 874
BspMI	ACCTGC	2 cut(s)	557, 703
BspPI	GGATC	2 cut(s)	269, 864
BspTNI	GGTCTC	1 cut(s)	778
BsrDI	GCAATG	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	769
BsrI	ACTGG	3 cut(s)	130, 393, 792
BssAI	RCCGGY	1 cut(s)	769
BssECI	CCNNGG	2 cut(s)	439, 756
BssMI	GATC	4 cut(s)	261, 334, 705, 856
Bst2UI	CCWGG	2 cut(s)	440, 626
Bst4CI	ACNGT	2 cut(s)	254, 449
BstAPI	GCANNNNNTGC	2 cut(s)	470, 788
BstC8I	GCNNGC	1 cut(s)	1017
BstDEI	CTNAG	3 cut(s)	99, 257, 531
BstDSI	CCRYGG	1 cut(s)	756
BstF5I	GGATG	4 cut(s)	141, 389, 458, 609
BstFNI	CGCG	2 cut(s)	153, 307
BstHHI	GCGC	2 cut(s)	155, 309
BstKTI	GATC	4 cut(s)	264, 337, 708, 859
BstMAI	GTCTC	3 cut(s)	333, 528, 778
BstMBI	GATC	4 cut(s)	261, 334, 705, 856
BstMWI	GCNNNNNNNGC	7 cut(s)	71, 121, 470, 479, 621, 635, 788
BstNI	CCWGG	2 cut(s)	440, 626
BstNSI	RCATGY	1 cut(s)	41
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	438, 624
BstSFI	CTRYAG	5 cut(s)	381, 471, 483, 696, 870
BstUI	CGCG	2 cut(s)	153, 307
BstV1I	GCAGC	3 cut(s)	491, 641, 710
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	624, 755
BtgI	CCRYGG	1 cut(s)	756
BtsCI	GGATG	4 cut(s)	141, 389, 458, 609
BtsI	GCAGTG	2 cut(s)	316, 480
BtsIMutI	CAGTG	4 cut(s)	137, 316, 480, 799
BveI	ACCTGC	2 cut(s)	557, 703
Cac8I	GCNNGC	1 cut(s)	1017
CfoI	GCGC	2 cut(s)	155, 309
Cfr10I	RCCGGY	1 cut(s)	769
Cfr13I	GGNCC	2 cut(s)	163, 436
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	903, 958
CspAI	ACCGGT	1 cut(s)	769
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	8 cut(s)	38, 146, 167, 340, 673, 805, 860, 930
CviQI	GTAC	2 cut(s)	903, 958
DdeI	CTNAG	3 cut(s)	99, 257, 531
DpnI	GATC	4 cut(s)	263, 336, 707, 858
DpnII	GATC	4 cut(s)	261, 334, 705, 856
Eco147I	AGGCCT	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	778
Eco47I	GGWCC	2 cut(s)	163, 436
Eco57I	CTGAAG	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	438, 624
FaeI	CATG	8 cut(s)	41, 149, 170, 343, 676, 808, 863, 933
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	8 cut(s)	37, 145, 166, 339, 672, 804, 859, 929
Fnu4HI	GCNGC	4 cut(s)	82, 480, 630, 699
FokI	GGATG	4 cut(s)	148, 376, 465, 596
Fsp4HI	GCNGC	4 cut(s)	82, 480, 630, 699
FspBI	CTAG	3 cut(s)	47, 542, 819
GlaI	GCGC	2 cut(s)	154, 308
GluI	GCNGC	4 cut(s)	82, 480, 630, 699
GsaI	CCCAGC	2 cut(s)	463, 946
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	624, 755
HapII	CCGG	1 cut(s)	770
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	2 cut(s)	155, 309
Hin1II	CATG	8 cut(s)	41, 149, 170, 343, 676, 808, 863, 933
Hin6I	GCGC	2 cut(s)	153, 307
HinP1I	GCGC	2 cut(s)	153, 307
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	1017
HinfI	GANTC	5 cut(s)	221, 241, 353, 689, 966
HpaII	CCGG	1 cut(s)	770
HphI	GGTGA	5 cut(s)	119, 415, 455, 684, 959
Hpy166II	GTNNAC	2 cut(s)	661, 831
Hpy188I	TCNGA	3 cut(s)	352, 532, 561
Hpy188III	TCNNGA	3 cut(s)	190, 298, 332
Hpy8I	GTNNAC	2 cut(s)	661, 831
HpyAV	CCTTC	4 cut(s)	169, 406, 482, 745
HpyCH4III	ACNGT	2 cut(s)	254, 449
HpyF10VI	GCNNNNNNNGC	7 cut(s)	71, 121, 470, 479, 621, 635, 788
HpyF3I	CTNAG	3 cut(s)	99, 257, 531
Hsp92II	CATG	8 cut(s)	41, 149, 170, 343, 676, 808, 863, 933
HspAI	GCGC	2 cut(s)	153, 307
Kzo9I	GATC	4 cut(s)	261, 334, 705, 856
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	3 cut(s)	491, 641, 710
LweI	GCATC	2 cut(s)	133, 778
MaeI	CTAG	3 cut(s)	47, 542, 819
MaeIII	GTNAC	6 cut(s)	376, 421, 443, 551, 865, 1006
MalI	GATC	4 cut(s)	263, 336, 707, 858
MboI	GATC	4 cut(s)	261, 334, 705, 856
MboII	GAAGA	2 cut(s)	302, 962
MfeI	CAATTG	2 cut(s)	783, 851
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	9 cut(s)	27, 57, 269, 293, 319, 783, 798, 851, 925
MlyI	GAGTC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	185
MseI	TTAA	2 cut(s)	105, 600
MspI	CCGG	1 cut(s)	770
MspR9I	CCNGG	2 cut(s)	440, 626
MunI	CAATTG	2 cut(s)	783, 851
MvaI	CCWGG	2 cut(s)	440, 626
MvnI	CGCG	2 cut(s)	153, 307
MwoI	GCNNNNNNNGC	7 cut(s)	71, 121, 470, 479, 621, 635, 788
NdeII	GATC	4 cut(s)	261, 334, 705, 856
NlaIII	CATG	8 cut(s)	41, 149, 170, 343, 676, 808, 863, 933
NmuCI	GTSAC	4 cut(s)	376, 421, 443, 551
NspI	RCATGY	1 cut(s)	41
PaqCI	CACCTGC	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	624
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	4 cut(s)	241, 353, 689, 966
PflMI	CCANNNNNTGG	1 cut(s)	136
PinAI	ACCGGT	1 cut(s)	769
PkrI	GCNGC	4 cut(s)	83, 481, 631, 700
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	438, 624
PspFI	CCCAGC	2 cut(s)	459, 942
PspGI	CCWGG	2 cut(s)	438, 624
PspPI	GGNCC	2 cut(s)	163, 436
PstI	CTGCAG	4 cut(s)	385, 475, 700, 874
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	904, 959
RsaNI	GTAC	2 cut(s)	903, 958
SaqAI	TTAA	2 cut(s)	105, 600
SatI	GCNGC	4 cut(s)	82, 480, 630, 699
Sau3AI	GATC	4 cut(s)	261, 334, 705, 856
Sau96I	GGNCC	2 cut(s)	163, 436
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	440, 626
SfaNI	GCATC	2 cut(s)	133, 778
SfcI	CTRYAG	5 cut(s)	381, 471, 483, 696, 870
SinI	GGWCC	2 cut(s)	163, 436
SmlI	CTYRAG	2 cut(s)	69, 633
SmoI	CTYRAG	2 cut(s)	69, 633
Sse9I	AATT	9 cut(s)	27, 57, 269, 293, 319, 783, 798, 851, 925
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	3 cut(s)	82, 613, 1002
SspMI	CTAG	3 cut(s)	47, 542, 819
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	438, 624
TaaI	ACNGT	2 cut(s)	254, 449
TaqI	TCGA	1 cut(s)	546
TasI	AATT	9 cut(s)	27, 57, 269, 293, 319, 783, 798, 851, 925
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	4 cut(s)	241, 353, 689, 966
Tru1I	TTAA	2 cut(s)	105, 600
Tru9I	TTAA	2 cut(s)	105, 600
TscAI	CASTG	4 cut(s)	137, 316, 480, 799
TseFI	GTSAC	4 cut(s)	376, 421, 443, 551
TseI	GCWGC	3 cut(s)	479, 629, 698
Tsp45I	GTSAC	4 cut(s)	376, 421, 443, 551
TspDTI	ATGAA	5 cut(s)	205, 282, 303, 595, 918
TspRI	CASTG	4 cut(s)	137, 316, 480, 799
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	163, 436
XapI	RAATTY	4 cut(s)	57, 269, 293, 925
XceI	RCATGY	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	3 cut(s)	47, 542, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.