Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Reverse (-)

16690873 .. 16692860

Gene Structure 1988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAATCCCATAGTTTCTTTGCTCTTTGTCCTCCTCGTTGTTGTTCAGTTGAGTCCAACCTTATCATACCCAGCAGATGATCACCATGACGATGATAATGAATCACCTGAACACTGGAAGGGTGCCACACCTCTAACGGTTCCGACCATTTTAGAGAAATTACCCTTTGGGGATTTTCTATCCTTTGCTCACTACCACAGGAGTTGTCCAGACCTTGAAGGCATTATCAATAGGAAATTGAAGCAAAGGCTTAAGCAGGACTACACCATAGCTGCTAGTCTCATGAGGTTGCACTTCCATGACTGTGCCATCAGGGGATGTGATGCCTCCATCTTATTAAACCATGAGGGAAGTGAGAGAACTGCCTTGGCCAGCAAGACACTAAGAGGGTTTGAAGTGATAGATGATATCAAAGCAGAGGTCGAGAAGAAGTGCCCCAAAACAGTATCTTGTGCAGATATCTTGACTGCAGCTACAAGAGATGCCACTGTTATGGTCGGCGGTCCATACTGGATGGTCCCCTATGGTCGGAAGGATGGGCGAGTTTCAATTGCCAAGGAAGCTGAATGGGTGCCGATGGGTCATGAAAACATTACTGCTTTGGTTGAGTTTTTCCAATCTCAGGGCTTGAATGTGCTTGACTTGGTTGTTCTCTCAGGGGCACACACCATAGGAAGGTCTTCATGTGCTTCCATACAAAACAGGCTCTTTAACTTCGATGGATATGGGAACTCTGATCCATCCATTGATGAAAAATACTTGAACTTCTTGAAAAGAAAATGCAGATGGGGATCAGACTATGTTGACCTTGATGCTACAACTCCAAAAACCTTTGACACTGCATACTACTCGAATCTGCAGAGGAAGATGGGACTTCTCAAAACAGATCAATTGTTGTATTCTGATACAAGGACTTCACCACTTGTCACTGCTTTAGCTCACCAGCCCGCAGTCTTCTACCACCAGTTTGGAGTCTCCATGGCCAAACTGGGGAATGTTCAAGTCCTCACAGGCCAAGATGAAGGCGAAATTCGAACCAACTGCAATTTTGTCAACTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

354

Amino Acids

39.56

Weight (kDa)

6.06

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	78 - 314	2.5e-80	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	122, 571
AciI	CCGC	2 cut(s)	501, 948
AclWI	GGATC	2 cut(s)	731, 799
AcoI	YGGCCR	2 cut(s)	369, 981
AcsI	RAATTY	1 cut(s)	1029
AfiI	CCNNNNNNNGG	4 cut(s)	528, 622, 675, 990
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	8 cut(s)	218, 241, 395, 549, 631, 763, 772, 1001
AluBI	AGCT	4 cut(s)	272, 473, 563, 938
AluI	AGCT	4 cut(s)	272, 473, 563, 938
Alw26I	GTCTC	2 cut(s)	284, 979
AlwI	GGATC	2 cut(s)	731, 799
AoxI	GGCC	3 cut(s)	369, 981, 1012
ApeKI	GCWGC	2 cut(s)	272, 470
ApoI	RAATTY	1 cut(s)	1029
ArsI	GACNNNNNNTTYG	2 cut(s)	405, 437
Asp700I	GAANNNNTTC	1 cut(s)	679
AspS9I	GGNCC	2 cut(s)	503, 517
AsuHPI	GGTGA	4 cut(s)	74, 96, 909, 932
AsuII	TTCGAA	1 cut(s)	1033
AvaII	GGWCC	2 cut(s)	503, 517
BaeGI	GKGCMC	2 cut(s)	437, 664
BalI	TGGCCA	2 cut(s)	371, 983
BanI	GGYRCC	2 cut(s)	122, 571
BbsI	GAAGAC	2 cut(s)	672, 946
BbvI	GCAGC	2 cut(s)	259, 482
BccI	CCATC	9 cut(s)	317, 338, 508, 530, 571, 713, 748, 780, 862
BcgI	CGANNNNNNTGC	4 cut(s)	831, 865, 1023, 1057
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	284, 979
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	2 cut(s)	468, 857
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	2 cut(s)	273, 471
BlsI	GCNGC	2 cut(s)	274, 472
Bme18I	GGWCC	2 cut(s)	503, 517
BmgT120I	GGNCC	2 cut(s)	503, 517
BmiI	GGNNCC	4 cut(s)	124, 141, 519, 573
BmrI	ACTGGG	1 cut(s)	998
BmsI	GCATC	3 cut(s)	313, 472, 802
BmuI	ACTGGG	1 cut(s)	998
BpiI	GAAGAC	2 cut(s)	672, 946
Bpu14I	TTCGAA	1 cut(s)	1033
BsaBI	GATNNNNATC	1 cut(s)	790
BsaJI	CCNNGG	3 cut(s)	366, 555, 978
Bsc4I	CCNNNNNNNGG	4 cut(s)	528, 622, 675, 990
Bse1I	ACTGG	4 cut(s)	119, 515, 964, 993
Bse8I	GATNNNNATC	1 cut(s)	790
BseDI	CCNNGG	3 cut(s)	366, 555, 978
BseGI	GGATG	4 cut(s)	323, 519, 541, 740
BseJI	GATNNNNATC	1 cut(s)	790
BseLI	CCNNNNNNNGG	4 cut(s)	528, 622, 675, 990
BseMII	CTCAG	2 cut(s)	635, 669
BseNI	ACTGG	4 cut(s)	119, 515, 964, 993
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	437, 664
BseXI	GCAGC	2 cut(s)	259, 482
BseYI	CCCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	3 cut(s)	371, 983, 1014
BshNI	GGYRCC	2 cut(s)	122, 571
BslFI	GGGAC	2 cut(s)	503, 885
BslI	CCNNNNNNNGG	4 cut(s)	528, 622, 675, 990
BsmAI	GTCTC	2 cut(s)	284, 979
BsmFI	GGGAC	2 cut(s)	503, 885
BsnI	GGCC	3 cut(s)	371, 983, 1014
Bsp119I	TTCGAA	1 cut(s)	1033
Bsp1286I	GDGCHC	2 cut(s)	437, 664
Bsp143I	GATC	4 cut(s)	79, 736, 791, 886
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	2 cut(s)	501, 948
BspANI	GGCC	3 cut(s)	371, 983, 1014
BspCNI	CTCAG	2 cut(s)	634, 668
BspHI	TCATGA	2 cut(s)	282, 583
BspLI	GGNNCC	4 cut(s)	124, 141, 519, 573
BspMAI	CTGCAG	2 cut(s)	472, 861
BspPI	GGATC	2 cut(s)	731, 799
BspT104I	TTCGAA	1 cut(s)	1033
BspT107I	GGYRCC	2 cut(s)	122, 571
BspTI	CTTAAG	1 cut(s)	251
BsrI	ACTGG	4 cut(s)	119, 515, 964, 993
BssECI	CCNNGG	3 cut(s)	366, 555, 978
BssMI	GATC	4 cut(s)	79, 736, 791, 886
BssT1I	CCWWGG	3 cut(s)	366, 555, 978
Bst4CI	ACNGT	4 cut(s)	139, 305, 445, 490
BstAFI	CTTAAG	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	1033
BstC8I	GCNNGC	2 cut(s)	373, 948
BstDEI	CTNAG	3 cut(s)	383, 621, 655
BstDSI	CCRYGG	1 cut(s)	978
BstF5I	GGATG	4 cut(s)	323, 519, 541, 740
BstKTI	GATC	4 cut(s)	82, 739, 794, 889
BstMAI	GTCTC	2 cut(s)	284, 979
BstMBI	GATC	4 cut(s)	79, 736, 791, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstSFI	CTRYAG	2 cut(s)	468, 857
BstSLI	GKGCMC	2 cut(s)	437, 664
BstV1I	GCAGC	2 cut(s)	259, 482
BstV2I	GAAGAC	2 cut(s)	672, 946
BstXI	CCANNNNNNTGG	2 cut(s)	493, 968
BsuRI	GGCC	3 cut(s)	371, 983, 1014
BtgI	CCRYGG	1 cut(s)	978
BtsCI	GGATG	4 cut(s)	323, 519, 541, 740
BtsI	GCAGTG	2 cut(s)	837, 927
BtsIMutI	CAGTG	4 cut(s)	112, 486, 837, 927
Cac8I	GCNNGC	2 cut(s)	373, 948
CciI	TCATGA	2 cut(s)	282, 583
Cfr13I	GGNCC	2 cut(s)	503, 517
CspCI	CAANNNNNGTGG	2 cut(s)	185, 220
CviAII	CATG	7 cut(s)	86, 283, 299, 344, 584, 684, 979
DdeI	CTNAG	3 cut(s)	383, 621, 655
DpnI	GATC	4 cut(s)	81, 738, 793, 888
DpnII	GATC	4 cut(s)	79, 736, 791, 886
EaeI	YGGCCR	2 cut(s)	369, 981
Eco130I	CCWWGG	3 cut(s)	366, 555, 978
Eco32I	GATATC	2 cut(s)	409, 460
Eco47I	GGWCC	2 cut(s)	503, 517
EcoRV	GATATC	2 cut(s)	409, 460
EcoT14I	CCWWGG	3 cut(s)	366, 555, 978
ErhI	CCWWGG	3 cut(s)	366, 555, 978
FaeI	CATG	7 cut(s)	89, 286, 302, 347, 587, 687, 982
FaqI	GGGAC	2 cut(s)	503, 885
FatI	CATG	7 cut(s)	85, 282, 298, 343, 583, 683, 978
FauI	CCCGC	1 cut(s)	955
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	273, 471
FokI	GGATG	4 cut(s)	330, 526, 548, 727
Fsp4HI	GCNGC	2 cut(s)	273, 471
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	2 cut(s)	273, 471
GsaI	CCCAGC	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	371, 983, 1014
Hin1II	CATG	7 cut(s)	89, 286, 302, 347, 587, 687, 982
HincII	GTYRAC	2 cut(s)	805, 1054
HindII	GTYRAC	2 cut(s)	805, 1054
HinfI	GANTC	5 cut(s)	4, 52, 101, 853, 972
HphI	GGTGA	4 cut(s)	74, 96, 909, 932
Hpy166II	GTNNAC	2 cut(s)	805, 1054
Hpy188I	TCNGA	5 cut(s)	144, 531, 736, 796, 904
Hpy188III	TCNNGA	6 cut(s)	209, 283, 424, 463, 584, 769
Hpy8I	GTNNAC	2 cut(s)	805, 1054
HpyAV	CCTTC	5 cut(s)	112, 212, 526, 669, 1016
HpyCH4III	ACNGT	4 cut(s)	139, 305, 445, 490
HpyCH4V	TGCA	7 cut(s)	292, 455, 470, 783, 842, 859, 1044
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpyF3I	CTNAG	3 cut(s)	383, 621, 655
Hsp92II	CATG	7 cut(s)	89, 286, 302, 347, 587, 687, 982
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	79, 736, 791, 886
Lsp1109I	GCAGC	2 cut(s)	259, 482
LweI	GCATC	3 cut(s)	313, 472, 802
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	925
MalI	GATC	4 cut(s)	81, 738, 793, 888
MboI	GATC	4 cut(s)	79, 736, 791, 886
MboII	GAAGA	4 cut(s)	439, 672, 877, 946
MfeI	CAATTG	2 cut(s)	549, 890
MhlI	GDGCHC	2 cut(s)	437, 664
MlsI	TGGCCA	2 cut(s)	371, 983
MluCI	AATT	6 cut(s)	158, 236, 549, 890, 1029, 1045
MluNI	TGGCCA	2 cut(s)	371, 983
MlyI	GAGTC	2 cut(s)	61, 981
MmeI	TCCRAC	3 cut(s)	80, 167, 509
Mox20I	TGGCCA	2 cut(s)	371, 983
MroXI	GAANNNNTTC	1 cut(s)	679
MscI	TGGCCA	2 cut(s)	371, 983
MseI	TTAA	3 cut(s)	252, 338, 711
MslI	CAYNNNNRTG	4 cut(s)	90, 297, 303, 491
Msp20I	TGGCCA	2 cut(s)	371, 983
MspCI	CTTAAG	1 cut(s)	251
MunI	CAATTG	2 cut(s)	549, 890
MwoI	GCNNNNNNNGC	1 cut(s)	560
NcoI	CCATGG	1 cut(s)	978
NdeII	GATC	4 cut(s)	79, 736, 791, 886
NlaIII	CATG	7 cut(s)	89, 286, 302, 347, 587, 687, 982
NlaIV	GGNNCC	4 cut(s)	124, 141, 519, 573
NmuCI	GTSAC	1 cut(s)	925
NspV	TTCGAA	1 cut(s)	1033
PagI	TCATGA	2 cut(s)	282, 583
PdmI	GAANNNNTTC	1 cut(s)	679
PfeI	GAWTC	3 cut(s)	4, 101, 853
PkrI	GCNGC	2 cut(s)	274, 472
PleI	GAGTC	2 cut(s)	60, 980
PpsI	GAGTC	2 cut(s)	60, 980
PspFI	CCCAGC	1 cut(s)	70
PspN4I	GGNNCC	4 cut(s)	124, 141, 519, 573
PspPI	GGNCC	2 cut(s)	503, 517
PstI	CTGCAG	2 cut(s)	472, 861
RseI	CAYNNNNRTG	4 cut(s)	90, 297, 303, 491
SaqAI	TTAA	3 cut(s)	252, 338, 711
SatI	GCNGC	2 cut(s)	273, 471
Sau3AI	GATC	4 cut(s)	79, 736, 791, 886
Sau96I	GGNCC	2 cut(s)	503, 517
SchI	GAGTC	2 cut(s)	61, 981
SduI	GDGCHC	2 cut(s)	437, 664
SfaNI	GCATC	3 cut(s)	313, 472, 802
SfcI	CTRYAG	2 cut(s)	468, 857
SfuI	TTCGAA	1 cut(s)	1033
SinI	GGWCC	2 cut(s)	503, 517
SmiMI	CAYNNNNRTG	4 cut(s)	90, 297, 303, 491
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	6 cut(s)	158, 236, 549, 890, 1029, 1045
SsiI	CCGC	2 cut(s)	501, 948
SspMI	CTAG	1 cut(s)	276
StyI	CCWWGG	3 cut(s)	366, 555, 978
TaaI	ACNGT	4 cut(s)	139, 305, 445, 490
TaqI	TCGA	4 cut(s)	423, 717, 851, 1033
TasI	AATT	6 cut(s)	158, 236, 549, 890, 1029, 1045
TfiI	GAWTC	3 cut(s)	4, 101, 853
Tru1I	TTAA	3 cut(s)	252, 338, 711
Tru9I	TTAA	3 cut(s)	252, 338, 711
TscAI	CASTG	4 cut(s)	119, 493, 844, 934
TseFI	GTSAC	1 cut(s)	925
TseI	GCWGC	2 cut(s)	272, 470
Tsp45I	GTSAC	1 cut(s)	925
TspDTI	ATGAA	6 cut(s)	17, 114, 600, 672, 765, 1035
TspRI	CASTG	4 cut(s)	119, 493, 844, 934
Vha464I	CTTAAG	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	503, 517
XapI	RAATTY	1 cut(s)	1029
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XmnI	GAANNNNTTC	1 cut(s)	679
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.