Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007300.1

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Reverse (-)

112597 .. 113920

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007300.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgggaatttctacattatttgctctccttgttctcacattggagttgttcatgagtattaatgcatccgctgctaaaccagtcaaatcaactgcacaggtgcctgctgaggctcttttgtctttcagtcactacatgaaaacttgtccacaagcagagggcatcattcagcaaaaagtcgtagactggctcgagaaggatttcactttggctgctagcatcatccgcttacacttccatgattgtgttgtgaggggttgcgatgcatcaattttgcttaaccatcgggggagtgagaggagagcttttgcaagctatacactcagaggtttccaagtaatcgatgacatcaaggcggagcttgagaggcagtgccctaaaactgtgtcttgcgcggacattctcactgctgcaacaagagatgccaccatcatggccggaggtccgttttgggaagtcccattcgggcgtagagatgggaagatttcgattgccagagaagcggatgagaaggtccctcagggccatgagaatatcactgcattgatccaactatttcacgaaaaaggcttgaatatgcttgatttggttgctctgtcaggagcacacaccattggtagaagtacttgccttgccttcaagaaaaggcttgcaaacttcaatggaaccagaaagcccgacccttcactaaattctatgtacttgaacaacttcttgaagaagaaatgtcaaaaagactcggacttggtttttcttgatgccataactccgaagacatttgacacgcaatactacacgaatcttcacaagaagttggggttgttatccacagatcagttgctcaagtcagatatgagaaccggtccgtttgttgatgcattaggttcccagccttctcttttcgagagccagtttgcagcatccatggtgaagcttggaaatgtacaagttcttacaagacccaatgaaggcgagatccgagtgaactgcaattttgtcaatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

335

Amino Acids

37.09

Weight (kDa)

8.71

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	395
AciI	CCGC	5 cut(s)	69, 226, 356, 395, 503
AclWI	GGATC	2 cut(s)	541, 970
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	2 cut(s)	6, 691
AfaI	GTAC	3 cut(s)	625, 701, 945
AfiI	CCNNNNNNNGG	1 cut(s)	968
AgeI	ACCGGT	1 cut(s)	860
AgsI	TTSAA	5 cut(s)	574, 640, 661, 706, 718
AluBI	AGCT	4 cut(s)	305, 315, 361, 934
AluI	AGCT	4 cut(s)	305, 315, 361, 934
Alw21I	GWGCWC	1 cut(s)	607
AlwI	GGATC	2 cut(s)	541, 970
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	2 cut(s)	435, 523
ApeKI	GCWGC	4 cut(s)	71, 212, 410, 917
ApoI	RAATTY	2 cut(s)	6, 691
AseI	ATTAAT	1 cut(s)	60
AsiGI	ACCGGT	1 cut(s)	860
Asp700I	GAANNNNTTC	2 cut(s)	200, 710
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	4 cut(s)	443, 514, 523, 863
AsuHPI	GGTGA	1 cut(s)	940
AsuNHI	GCTAGC	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	3 cut(s)	443, 514, 863
AxyI	CCTNAGG	1 cut(s)	519
BaeGI	GKGCMC	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	779
Bbv12I	GWGCWC	1 cut(s)	607
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	4 cut(s)	58, 199, 397, 929
BccI	CCATC	3 cut(s)	291, 437, 470
BcgI	CGANNNNNNTGC	2 cut(s)	969, 1003
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	4 cut(s)	72, 213, 411, 918
BlsI	GCNGC	4 cut(s)	73, 214, 412, 919
BmcAI	AGTACT	1 cut(s)	625
Bme18I	GGWCC	3 cut(s)	443, 514, 863
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	4 cut(s)	443, 514, 523, 863
BmiI	GGNNCC	4 cut(s)	102, 516, 667, 886
BmsI	GCATC	9 cut(s)	74, 171, 228, 253, 275, 412, 748, 865, 929
BmtI	GCTAGC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	779
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	383, 827
Bsa29I	ATCGAT	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	924
BsaWI	WCCGGW	1 cut(s)	860
Bsc4I	CCNNNNNNNGG	1 cut(s)	968
Bse118I	RCCGGY	1 cut(s)	860
Bse1I	ACTGG	3 cut(s)	80, 191, 910
Bse21I	CCTNAGG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	924
BseGI	GGATG	4 cut(s)	65, 222, 511, 920
BseLI	CCNNNNNNNGG	1 cut(s)	968
BseMII	CTCAG	3 cut(s)	99, 337, 533
BseNI	ACTGG	3 cut(s)	80, 191, 910
BseRI	GAGGAG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	4 cut(s)	58, 199, 397, 929
BseYI	CCCAGC	1 cut(s)	888
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	437, 525
BshNI	GGYRCC	1 cut(s)	100
BshTI	ACCGGT	1 cut(s)	860
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	438, 861
BslFI	GGGAC	2 cut(s)	443, 500
BslI	CCNNNNNNNGG	1 cut(s)	968
BsmFI	GGGAC	2 cut(s)	443, 500
BsnI	GGCC	2 cut(s)	437, 525
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	377, 607
Bsp1407I	TGTACA	1 cut(s)	943
Bsp143I	GATC	3 cut(s)	546, 832, 975
Bsp19I	CCATGG	1 cut(s)	924
BspACI	CCGC	5 cut(s)	69, 226, 356, 395, 503
BspANI	GGCC	2 cut(s)	437, 525
BspCNI	CTCAG	3 cut(s)	100, 336, 532
BspDI	ATCGAT	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	395
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	4 cut(s)	102, 516, 667, 886
BspOI	GCTAGC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	541, 970
BspT107I	GGYRCC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	860
BsrGI	TGTACA	1 cut(s)	943
BsrI	ACTGG	3 cut(s)	80, 191, 910
BssAI	RCCGGY	1 cut(s)	860
BssECI	CCNNGG	1 cut(s)	924
BssMI	GATC	3 cut(s)	546, 832, 975
BssT1I	CCWWGG	1 cut(s)	924
Bst4CI	ACNGT	1 cut(s)	385
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	943
BstC8I	GCNNGC	4 cut(s)	105, 217, 313, 651
BstDEI	CTNAG	3 cut(s)	108, 323, 519
BstDSI	CCRYGG	1 cut(s)	924
BstF5I	GGATG	4 cut(s)	65, 222, 511, 920
BstFNI	CGCG	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	3 cut(s)	549, 835, 978
BstMBI	GATC	3 cut(s)	546, 832, 975
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 225, 367, 500
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	4 cut(s)	58, 199, 397, 929
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	1 cut(s)	975
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	975
Bsu15I	ATCGAT	1 cut(s)	342
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	437, 525
BsuTUI	ATCGAT	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	924
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	4 cut(s)	65, 222, 511, 920
BtsI	GCAGTG	3 cut(s)	377, 405, 537
BtsIMutI	CAGTG	3 cut(s)	377, 405, 537
Cac8I	GCNNGC	4 cut(s)	105, 217, 313, 651
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	1 cut(s)	395
Cfr10I	RCCGGY	1 cut(s)	860
Cfr13I	GGNCC	4 cut(s)	443, 514, 523, 863
ClaI	ATCGAT	1 cut(s)	342
CpoI	CGGWCCG	1 cut(s)	863
Csp6I	GTAC	3 cut(s)	624, 700, 944
CspAI	ACCGGT	1 cut(s)	860
CspI	CGGWCCG	1 cut(s)	863
CviAII	CATG	6 cut(s)	52, 136, 239, 433, 527, 925
CviQI	GTAC	3 cut(s)	624, 700, 944
DdeI	CTNAG	3 cut(s)	108, 323, 519
DpnI	GATC	3 cut(s)	548, 834, 977
DpnII	GATC	3 cut(s)	546, 832, 975
EaeI	YGGCCR	1 cut(s)	435
EciI	GGCGGA	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	924
Eco47I	GGWCC	3 cut(s)	443, 514, 863
Eco81I	CCTNAGG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	924
EcoT22I	ATGCAT	3 cut(s)	67, 268, 880
ErhI	CCWWGG	1 cut(s)	924
FaeI	CATG	6 cut(s)	55, 139, 242, 436, 530, 928
FaqI	GGGAC	2 cut(s)	443, 500
FatI	CATG	6 cut(s)	51, 135, 238, 432, 526, 924
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	72, 213, 411, 918
FokI	GGATG	4 cut(s)	52, 209, 518, 907
Fsp4HI	GCNGC	4 cut(s)	72, 213, 411, 918
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	4 cut(s)	72, 213, 411, 918
GsaI	CCCAGC	1 cut(s)	892
HaeIII	GGCC	2 cut(s)	437, 525
HapII	CCGG	2 cut(s)	438, 861
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	6 cut(s)	55, 139, 242, 436, 530, 928
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	932
HinfI	GANTC	2 cut(s)	737, 799
HpaII	CCGG	2 cut(s)	438, 861
HphI	GGTGA	1 cut(s)	940
Hpy166II	GTNNAC	3 cut(s)	149, 184, 985
Hpy188I	TCNGA	5 cut(s)	326, 742, 771, 850, 980
Hpy188III	TCNNGA	8 cut(s)	52, 193, 560, 600, 640, 715, 755, 904
Hpy8I	GTNNAC	3 cut(s)	149, 184, 985
HpyAV	CCTTC	6 cut(s)	190, 505, 646, 693, 903, 962
HpyCH4III	ACNGT	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 225, 367, 500
HpyF3I	CTNAG	3 cut(s)	108, 323, 519
Hsp92II	CATG	6 cut(s)	55, 139, 242, 436, 530, 928
HspAI	GCGC	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	546, 832, 975
LmnI	GCTCC	2 cut(s)	358, 602
Lsp1109I	GCAGC	4 cut(s)	58, 199, 397, 929
LweI	GCATC	9 cut(s)	74, 171, 228, 253, 275, 412, 748, 865, 929
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	3 cut(s)	548, 834, 977
MboI	GATC	3 cut(s)	546, 832, 975
MboII	GAAGA	5 cut(s)	493, 730, 733, 784, 794
MflI	RGATCY	1 cut(s)	975
MhlI	GDGCHC	2 cut(s)	377, 607
MluCI	AATT	4 cut(s)	6, 270, 691, 991
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	8 cut(s)	103, 151, 246, 291, 320, 360, 434, 528
Mph1103I	ATGCAT	3 cut(s)	67, 268, 880
MroXI	GAANNNNTTC	2 cut(s)	200, 710
MseI	TTAA	3 cut(s)	60, 279, 1006
MslI	CAYNNNNRTG	3 cut(s)	237, 243, 431
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	438, 861
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	4 cut(s)	71, 225, 367, 500
NcoI	CCATGG	1 cut(s)	924
NdeII	GATC	3 cut(s)	546, 832, 975
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	6 cut(s)	55, 139, 242, 436, 530, 928
NlaIV	GGNNCC	4 cut(s)	102, 516, 667, 886
NmuCI	GTSAC	1 cut(s)	128
NsiI	ATGCAT	3 cut(s)	67, 268, 880
PaeR7I	CTCGAG	1 cut(s)	191
PagI	TCATGA	1 cut(s)	51
PdmI	GAANNNNTTC	2 cut(s)	200, 710
PfeI	GAWTC	1 cut(s)	799
PinAI	ACCGGT	1 cut(s)	860
PkrI	GCNGC	4 cut(s)	73, 214, 412, 919
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
PpuMI	RGGWCCY	1 cut(s)	514
PshBI	ATTAAT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	888
PspN4I	GGNNCC	4 cut(s)	102, 516, 667, 886
PspPI	GGNCC	4 cut(s)	443, 514, 523, 863
PspPPI	RGGWCCY	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	975
RsaI	GTAC	3 cut(s)	625, 701, 945
RsaNI	GTAC	3 cut(s)	624, 700, 944
RseI	CAYNNNNRTG	3 cut(s)	237, 243, 431
Rsr2I	CGGWCCG	1 cut(s)	863
RsrII	CGGWCCG	1 cut(s)	863
SaqAI	TTAA	3 cut(s)	60, 279, 1006
SatI	GCNGC	4 cut(s)	72, 213, 411, 918
Sau3AI	GATC	3 cut(s)	546, 832, 975
Sau96I	GGNCC	4 cut(s)	443, 514, 523, 863
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	1 cut(s)	731
SduI	GDGCHC	2 cut(s)	377, 607
SetI	ASST	9 cut(s)	102, 307, 317, 331, 363, 445, 516, 886, 936
SfaNI	GCATC	9 cut(s)	74, 171, 228, 253, 275, 412, 748, 865, 929
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	3 cut(s)	443, 514, 863
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	3 cut(s)	237, 243, 431
SmlI	CTYRAG	3 cut(s)	191, 362, 842
SmoI	CTYRAG	3 cut(s)	191, 362, 842
Sse9I	AATT	4 cut(s)	6, 270, 691, 991
SsiI	CCGC	5 cut(s)	69, 226, 356, 395, 503
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	924
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	4 cut(s)	192, 342, 488, 903
TasI	AATT	4 cut(s)	6, 270, 691, 991
TatI	WGTACW	3 cut(s)	623, 699, 943
TfiI	GAWTC	1 cut(s)	799
Tru1I	TTAA	3 cut(s)	60, 279, 1006
Tru9I	TTAA	3 cut(s)	60, 279, 1006
TscAI	CASTG	3 cut(s)	377, 412, 544
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	4 cut(s)	71, 212, 410, 917
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	40, 152, 981
TspGWI	ACGGA	2 cut(s)	435, 855
TspRI	CASTG	3 cut(s)	377, 412, 544
VpaK11BI	GGWCC	3 cut(s)	443, 514, 863
VspI	ATTAAT	1 cut(s)	60
XapI	RAATTY	2 cut(s)	6, 691
XhoI	CTCGAG	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	2 cut(s)	200, 710
XspI	CTAG	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	625
Zsp2I	ATGCAT	3 cut(s)	67, 268, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.