Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Forward (+)

32294335 .. 32296319

Gene Structure 1985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1225600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAATTCCATAGTTTCCTTGCTCTTAGTTCTTCTTCTTGTTGTTGAATTAAATGCTTCTTCATCTTACCCAGAACACGGTCACGATCGCCATGATGAAGAAACAAACGAGTCCTGGGAGGGAGCAACAACTCTAACTCTAACACTTCCAACAATATCAGACGATTTGCCCTTTGGAGAGTTTCTTTCCAATTCCTACTATCACAGGAGTTGTCCAGACCTTGAAGGTATTATAAGTAGGAAGGTGAAGCAATGGCTTAAGGAGGATTACAGCCTAGCAGCTGGCCTCATGAGGTTGCACTTCCATGACTGTGCCATCAGGGGATGTGATGCCTCCATCTTATTAAACCATGAAGGAAGTGAGAGGGAAGGCAAGGCCAGCAAGACACTGAGAGGGTTTGAAGTGATAGATGATATCAAGGCAGAGGTTGAGAAGAAGTGCCCAAAAACAGTTTCTTGTGCAGACATTTTGACTGCAGCTGCAAGAGATGCTACTGTTCAAATTGGAGGTCCATACTGGGCTGTCCCCTATGGGAGGAAAGATGGAAAAGTTTCGATTGCTAAGGAAACTGAGATGGTTCCCATGGGTCATGAAGACATAACTAGTTTACTTGAGATTTTTCAATCACAGGGCTTGAATGTGGTTGACTTGGTTGTTCTCTCAGGGGCACACACCATAGGAAGGTCTTCATGTGAATCCGTACAACACAGACTCTTTAACTTCAGTGGAACTGCCAAGCCTGATCCATCCCTTGATGCGCAGTACTTGAGCTACTTGGAAAGAAAATGTAGATGGGCATCAGACTATGCTGATCTTGATGCTGTAACTCCACATAAATTTGACACTGCATACTACATAAATCTGCAGAAGAAGATGGGACTTTTATCCACAGATCAAATGTTGTATTCTGATCCAAGGACTAAATCTCTTGTCAGTGCTTTTGCTTCCCAGCCATCAGTCTTCCACTACCAGTTTGGAATATCCATGGCCAAACTAGGGAATGTTCAAGTCCTCACCGGTCAAAATGAAGGCGAAATTCGAACCAATTGCAACTTTGTCAACTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

357

Amino Acids

39.54

Weight (kDa)

5.47

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	79 - 316	3.3e-81	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
Acc16I	TGCGCA	1 cut(s)	759
AclWI	GGATC	2 cut(s)	737, 905
AcoI	YGGCCR	1 cut(s)	987
AcsI	RAATTY	3 cut(s)	4, 836, 1035
AcuI	CTGAAG	1 cut(s)	706
AfaI	GTAC	2 cut(s)	702, 764
AfiI	CCNNNNNNNGG	4 cut(s)	77, 534, 681, 996
AflII	CTTAAG	1 cut(s)	257
AgeI	ACCGGT	1 cut(s)	1016
AgsI	TTSAA	7 cut(s)	47, 224, 401, 500, 623, 637, 1007
AhlI	ACTAGT	1 cut(s)	602
AjnI	CCWGG	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	2 cut(s)	436, 468
AluBI	AGCT	3 cut(s)	281, 479, 771
AluI	AGCT	3 cut(s)	281, 479, 771
AlwI	GGATC	2 cut(s)	737, 905
AoxI	GGCC	3 cut(s)	283, 375, 987
ApeKI	GCWGC	3 cut(s)	278, 476, 479
ApoI	RAATTY	3 cut(s)	4, 836, 1035
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
AsiGI	ACCGGT	1 cut(s)	1016
Asp700I	GAANNNNTTC	2 cut(s)	550, 685
AspLEI	GCGC	1 cut(s)	760
AspS9I	GGNCC	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	256, 1006
AsuII	TTCGAA	1 cut(s)	1039
AvaII	GGWCC	1 cut(s)	509
BaeGI	GKGCMC	2 cut(s)	443, 670
BalI	TGGCCA	1 cut(s)	989
BbsI	GAAGAC	3 cut(s)	600, 678, 952
BbvI	GCAGC	3 cut(s)	290, 466, 488
BccI	CCATC	8 cut(s)	323, 344, 536, 568, 754, 786, 868, 961
BcgI	CGANNNNNNTGC	2 cut(s)	1029, 1063
BciT130I	CCWGG	1 cut(s)	115
BcuI	ACTAGT	1 cut(s)	602
BfaI	CTAG	3 cut(s)	275, 603, 995
BfmI	CTRYAG	2 cut(s)	474, 863
BfrI	CTTAAG	1 cut(s)	257
BisI	GCNGC	3 cut(s)	279, 477, 480
BlsI	GCNGC	3 cut(s)	280, 478, 481
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	5 cut(s)	319, 478, 745, 806, 808
BmuI	ACTGGG	1 cut(s)	526
BpiI	GAAGAC	3 cut(s)	600, 678, 952
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	1039
BpuEI	CTTGAG	2 cut(s)	632, 787
BsaBI	GATNNNNATC	1 cut(s)	796
BsaJI	CCNNGG	4 cut(s)	114, 582, 914, 984
BsaWI	WCCGGW	1 cut(s)	1016
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 534, 681, 996
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	2 cut(s)	521, 970
Bse3DI	GCAATG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	796
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	4 cut(s)	114, 582, 914, 984
BseGI	GGATG	2 cut(s)	329, 746
BseJI	GATNNNNATC	1 cut(s)	796
BseLI	CCNNNNNNNGG	4 cut(s)	77, 534, 681, 996
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	3 cut(s)	380, 561, 675
BseNI	ACTGG	2 cut(s)	521, 970
BseSI	GKGCMC	2 cut(s)	443, 670
BseXI	GCAGC	3 cut(s)	290, 466, 488
BseYI	CCCAGC	1 cut(s)	948
BsgI	GTGCAG	1 cut(s)	480
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	3 cut(s)	285, 377, 989
BshTI	ACCGGT	1 cut(s)	1016
BsiEI	CGRYCG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	1017
BslFI	GGGAC	2 cut(s)	509, 891
BslI	CCNNNNNNNGG	4 cut(s)	77, 534, 681, 996
BsmFI	GGGAC	2 cut(s)	509, 891
BsnI	GGCC	3 cut(s)	285, 377, 989
Bsp119I	TTCGAA	1 cut(s)	1039
Bsp1286I	GDGCHC	2 cut(s)	443, 670
Bsp143I	GATC	5 cut(s)	85, 742, 811, 892, 910
Bsp19I	CCATGG	2 cut(s)	582, 984
BspANI	GGCC	3 cut(s)	285, 377, 989
BspCNI	CTCAG	3 cut(s)	381, 562, 674
BspHI	TCATGA	2 cut(s)	288, 589
BspLI	GGNNCC	1 cut(s)	579
BspMAI	CTGCAG	2 cut(s)	478, 867
BspPI	GGATC	2 cut(s)	737, 905
BspT104I	TTCGAA	1 cut(s)	1039
BspTI	CTTAAG	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	1016
BsrI	ACTGG	2 cut(s)	521, 970
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	4 cut(s)	114, 582, 914, 984
BssMI	GATC	5 cut(s)	85, 742, 811, 892, 910
BssT1I	CCWWGG	3 cut(s)	582, 914, 984
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	4 cut(s)	80, 311, 451, 496
BstAFI	CTTAAG	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	1039
BstC8I	GCNNGC	2 cut(s)	283, 379
BstDEI	CTNAG	5 cut(s)	25, 389, 561, 570, 661
BstDSI	CCRYGG	2 cut(s)	582, 984
BstENI	CCTNNNNNAGG	1 cut(s)	532
BstF5I	GGATG	2 cut(s)	329, 746
BstHHI	GCGC	1 cut(s)	760
BstKTI	GATC	5 cut(s)	88, 745, 814, 895, 913
BstMBI	GATC	5 cut(s)	85, 742, 811, 892, 910
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 488
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	2 cut(s)	474, 863
BstSLI	GKGCMC	2 cut(s)	443, 670
BstV1I	GCAGC	3 cut(s)	290, 466, 488
BstV2I	GAAGAC	3 cut(s)	600, 678, 952
BsuRI	GGCC	3 cut(s)	285, 377, 989
BtgI	CCRYGG	2 cut(s)	582, 984
BtsCI	GGATG	2 cut(s)	329, 746
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	4 cut(s)	386, 730, 843, 940
Cac8I	GCNNGC	2 cut(s)	283, 379
CciI	TCATGA	2 cut(s)	288, 589
CfoI	GCGC	1 cut(s)	760
Cfr10I	RCCGGY	1 cut(s)	1016
Cfr13I	GGNCC	1 cut(s)	509
Csp6I	GTAC	2 cut(s)	701, 763
CspAI	ACCGGT	1 cut(s)	1016
CviAII	CATG	8 cut(s)	92, 289, 305, 350, 583, 590, 690, 985
CviQI	GTAC	2 cut(s)	701, 763
DdeI	CTNAG	5 cut(s)	25, 389, 561, 570, 661
DpnI	GATC	5 cut(s)	87, 744, 813, 894, 912
DpnII	GATC	5 cut(s)	85, 742, 811, 892, 910
EaeI	YGGCCR	1 cut(s)	987
Eco130I	CCWWGG	3 cut(s)	582, 914, 984
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	706
EcoNI	CCTNNNNNAGG	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	3 cut(s)	582, 914, 984
ErhI	CCWWGG	3 cut(s)	582, 914, 984
FaeI	CATG	8 cut(s)	95, 292, 308, 353, 586, 593, 693, 988
FaqI	GGGAC	2 cut(s)	509, 891
FatI	CATG	8 cut(s)	91, 288, 304, 349, 582, 589, 689, 984
Fnu4HI	GCNGC	3 cut(s)	279, 477, 480
FokI	GGATG	2 cut(s)	336, 733
Fsp4HI	GCNGC	3 cut(s)	279, 477, 480
FspBI	CTAG	3 cut(s)	275, 603, 995
FspI	TGCGCA	1 cut(s)	759
GlaI	GCGC	1 cut(s)	759
GluI	GCNGC	3 cut(s)	279, 477, 480
GsaI	CCCAGC	1 cut(s)	952
HaeIII	GGCC	3 cut(s)	285, 377, 989
HapII	CCGG	1 cut(s)	1017
HhaI	GCGC	1 cut(s)	760
Hin1II	CATG	8 cut(s)	95, 292, 308, 353, 586, 593, 693, 988
Hin6I	GCGC	1 cut(s)	758
HinP1I	GCGC	1 cut(s)	758
HincII	GTYRAC	2 cut(s)	646, 1060
HindII	GTYRAC	2 cut(s)	646, 1060
HinfI	GANTC	3 cut(s)	110, 695, 711
HpaII	CCGG	1 cut(s)	1017
HphI	GGTGA	2 cut(s)	256, 1006
Hpy166II	GTNNAC	3 cut(s)	608, 646, 1060
Hpy188I	TCNGA	3 cut(s)	160, 802, 910
Hpy188III	TCNNGA	5 cut(s)	83, 215, 289, 590, 815
Hpy8I	GTNNAC	3 cut(s)	608, 646, 1060
HpyAV	CCTTC	6 cut(s)	218, 235, 347, 362, 675, 1022
HpyCH4III	ACNGT	4 cut(s)	80, 311, 451, 496
HpyCH4V	TGCA	7 cut(s)	298, 461, 476, 482, 848, 865, 1050
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 488
HpyF3I	CTNAG	5 cut(s)	25, 389, 561, 570, 661
Hsp92II	CATG	8 cut(s)	95, 292, 308, 353, 586, 593, 693, 988
HspAI	GCGC	1 cut(s)	758
Kzo9I	GATC	5 cut(s)	85, 742, 811, 892, 910
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	3 cut(s)	290, 466, 488
LweI	GCATC	5 cut(s)	319, 478, 745, 806, 808
MaeI	CTAG	3 cut(s)	275, 603, 995
MaeIII	GTNAC	2 cut(s)	80, 823
MalI	GATC	5 cut(s)	87, 744, 813, 894, 912
MboI	GATC	5 cut(s)	85, 742, 811, 892, 910
MfeI	CAATTG	1 cut(s)	1045
MhlI	GDGCHC	2 cut(s)	443, 670
MlsI	TGGCCA	1 cut(s)	989
MluCI	AATT	7 cut(s)	4, 47, 190, 501, 836, 1035, 1045
MluNI	TGGCCA	1 cut(s)	989
MlyI	GAGTC	2 cut(s)	119, 705
MmeI	TCCRAC	1 cut(s)	173
Mox20I	TGGCCA	1 cut(s)	989
MroXI	GAANNNNTTC	2 cut(s)	550, 685
MscI	TGGCCA	1 cut(s)	989
MseI	TTAA	5 cut(s)	50, 258, 344, 717, 1069
MslI	CAYNNNNRTG	2 cut(s)	303, 309
Msp20I	TGGCCA	1 cut(s)	989
MspA1I	CMGCKG	2 cut(s)	281, 479
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	1 cut(s)	1017
MspR9I	CCNGG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	1045
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	378, 488
NcoI	CCATGG	2 cut(s)	582, 984
NdeII	GATC	5 cut(s)	85, 742, 811, 892, 910
NlaIII	CATG	8 cut(s)	95, 292, 308, 353, 586, 593, 693, 988
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	1 cut(s)	80
NsbI	TGCGCA	1 cut(s)	759
NspV	TTCGAA	1 cut(s)	1039
PagI	TCATGA	2 cut(s)	288, 589
PdmI	GAANNNNTTC	2 cut(s)	550, 685
PfeI	GAWTC	1 cut(s)	695
PinAI	ACCGGT	1 cut(s)	1016
PkrI	GCNGC	3 cut(s)	280, 478, 481
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	2 cut(s)	118, 705
PpsI	GAGTC	2 cut(s)	118, 705
PsiI	TTATAA	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	948
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	509
PstI	CTGCAG	2 cut(s)	478, 867
PvuI	CGATCG	1 cut(s)	88
PvuII	CAGCTG	2 cut(s)	281, 479
RsaI	GTAC	2 cut(s)	702, 764
RsaNI	GTAC	2 cut(s)	701, 763
RseI	CAYNNNNRTG	2 cut(s)	303, 309
SaqAI	TTAA	5 cut(s)	50, 258, 344, 717, 1069
SatI	GCNGC	3 cut(s)	279, 477, 480
Sau3AI	GATC	5 cut(s)	85, 742, 811, 892, 910
Sau96I	GGNCC	1 cut(s)	509
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	2 cut(s)	119, 705
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	443, 670
SfaNI	GCATC	5 cut(s)	319, 478, 745, 806, 808
SfcI	CTRYAG	2 cut(s)	474, 863
SfuI	TTCGAA	1 cut(s)	1039
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	2 cut(s)	303, 309
SmlI	CTYRAG	3 cut(s)	257, 611, 766
SmoI	CTYRAG	3 cut(s)	257, 611, 766
SpeI	ACTAGT	1 cut(s)	602
Sse9I	AATT	7 cut(s)	4, 47, 190, 501, 836, 1035, 1045
SspMI	CTAG	3 cut(s)	275, 603, 995
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	3 cut(s)	582, 914, 984
TaaI	ACNGT	4 cut(s)	80, 311, 451, 496
TaqI	TCGA	2 cut(s)	554, 1039
TasI	AATT	7 cut(s)	4, 47, 190, 501, 836, 1035, 1045
TatI	WGTACW	1 cut(s)	762
TfiI	GAWTC	1 cut(s)	695
Tru1I	TTAA	5 cut(s)	50, 258, 344, 717, 1069
Tru9I	TTAA	5 cut(s)	50, 258, 344, 717, 1069
TscAI	CASTG	4 cut(s)	393, 730, 850, 940
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	3 cut(s)	278, 476, 479
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	7 cut(s)	17, 51, 111, 366, 606, 678, 1041
TspGWI	ACGGA	1 cut(s)	688
TspRI	CASTG	4 cut(s)	393, 730, 850, 940
Vha464I	CTTAAG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	509
XagI	CCTNNNNNAGG	1 cut(s)	532
XapI	RAATTY	3 cut(s)	4, 836, 1035
XcmI	CCANNNNNNNNNTGG	1 cut(s)	971
XmnI	GAANNNNTTC	2 cut(s)	550, 685
XspI	CTAG	3 cut(s)	275, 603, 995
ZrmI	AGTACT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.