Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Reverse (-)

16063546 .. 16065589

Gene Structure 2044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG171100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAATCCCATAGTTTCTTTGCTCTTTGTCCTGCTCGTTGTTGTTCAGTTGAGTCCAACCTTATCATATCCAGCAGATGATCACCATCATCACGACGACGATAATAACGAATCACCTGAACACTGGAAGGGTGCCACACCTCTAACCGTTCCGACCATTTTAGAGAACTTGCCTTTTGGGGATTTTCTCTCCTTTGCTCACTACCACAGGAGTTGTCCAGACCTTGAAGGCATTATCAATAGGAAATTGAAGCAATGGCTTAAGCAGGACTACACCATAGCTGCTAGTCTCATGAGGTTGCACTTCCATGACTGTGCCATCAGGGGATGTGATGCCTCCATCTTATTAAACCATGAGGGAAGTGAGAGGACTGCCTTGGCCAGCAAGACACTGAGAGGGTTTGAAGTGATAGATGATATCAAAGCAGAGGTCGAGAAGAAGTGCCCCAAAACAGTATCTTGTGCAGATATCTTGACTGCAGCTACAAGAGATGCCACTGTTATGGTCGGCGGTCCATACTGGATGGTCCCCTATGGTCGGAAGGATGGGCGAGTTTCAATTGCCAAGGAAGCTGAATGGGTGCCAATGGGTCATGAAAACATTACTGCTTTGGTAGAGTTTTTCCAATCTCAGGGCTTGAATGTGCTTGACTTGGTTGTTCTCTCAGGGGCACACACCATAGGAAGGTCTTCATGTGCTTCCATACAAAACAGGCTCTTTAACTTCGATGGATATGGGAACTCTGATCCATCCATTGATGAAAAATACTTGAACTTCTTGAAAAGAAAATGCAGATGGGGATCAGACTATGTTGACCTTGATGCTACAACTCCAAAAACCTTTGACACTGCATACTACTCGAATCTGCAGAGGAAGATGGGACTTCTCAAAACAGATCAATTGTTGTATTCTGATACAAGGACTTCACCACTTGTCACTGCTTTGGCTCACCAGCCCGCAGTCTTCTACCACCAGTTTGGAGTCTCCATGGCCAAACTGGGGAATGTTCAAGTCCTCACCGGCCAAGATGAAGGCGAAATTCGAACCAACTGCAATTTTGTCAACTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

357

Amino Acids

39.96

Weight (kDa)

5.95

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	80 - 317	4.7e-81	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 580
AciI	CCGC	2 cut(s)	510, 957
AclWI	GGATC	2 cut(s)	740, 808
AcoI	YGGCCR	3 cut(s)	378, 990, 1021
AcsI	RAATTY	1 cut(s)	1038
AfiI	CCNNNNNNNGG	4 cut(s)	537, 631, 684, 999
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	8 cut(s)	227, 250, 404, 558, 640, 772, 781, 1010
AluBI	AGCT	3 cut(s)	281, 482, 572
AluI	AGCT	3 cut(s)	281, 482, 572
Alw26I	GTCTC	2 cut(s)	293, 988
AlwI	GGATC	2 cut(s)	740, 808
AoxI	GGCC	3 cut(s)	378, 990, 1021
ApeKI	GCWGC	2 cut(s)	281, 479
ApoI	RAATTY	1 cut(s)	1038
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
Asp700I	GAANNNNTTC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	512, 526
AsuHPI	GGTGA	5 cut(s)	74, 105, 918, 941, 1009
AsuII	TTCGAA	1 cut(s)	1042
AvaII	GGWCC	2 cut(s)	512, 526
BaeGI	GKGCMC	2 cut(s)	446, 673
BalI	TGGCCA	2 cut(s)	380, 992
BanI	GGYRCC	2 cut(s)	131, 580
BbsI	GAAGAC	2 cut(s)	681, 955
BbvI	GCAGC	2 cut(s)	268, 491
BccI	CCATC	9 cut(s)	93, 326, 347, 517, 539, 722, 757, 789, 871
BcgI	CGANNNNNNTGC	4 cut(s)	840, 874, 1032, 1066
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	293, 988
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	477, 866
BfrI	CTTAAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	282, 480
BlsI	GCNGC	2 cut(s)	283, 481
Bme18I	GGWCC	2 cut(s)	512, 526
BmgT120I	GGNCC	2 cut(s)	512, 526
BmiI	GGNNCC	3 cut(s)	133, 528, 582
BmrI	ACTGGG	1 cut(s)	1007
BmsI	GCATC	3 cut(s)	322, 481, 811
BmuI	ACTGGG	1 cut(s)	1007
BpiI	GAAGAC	2 cut(s)	681, 955
Bpu14I	TTCGAA	1 cut(s)	1042
BsaBI	GATNNNNATC	2 cut(s)	84, 799
BsaJI	CCNNGG	3 cut(s)	375, 564, 987
Bsc4I	CCNNNNNNNGG	4 cut(s)	537, 631, 684, 999
Bse118I	RCCGGY	1 cut(s)	1019
Bse1I	ACTGG	4 cut(s)	128, 524, 973, 1002
Bse3DI	GCAATG	1 cut(s)	260
Bse8I	GATNNNNATC	2 cut(s)	84, 799
BseDI	CCNNGG	3 cut(s)	375, 564, 987
BseGI	GGATG	4 cut(s)	332, 528, 550, 749
BseJI	GATNNNNATC	2 cut(s)	84, 799
BseLI	CCNNNNNNNGG	4 cut(s)	537, 631, 684, 999
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	3 cut(s)	383, 644, 678
BseNI	ACTGG	4 cut(s)	128, 524, 973, 1002
BseSI	GKGCMC	2 cut(s)	446, 673
BseXI	GCAGC	2 cut(s)	268, 491
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	3 cut(s)	380, 992, 1023
BshNI	GGYRCC	2 cut(s)	131, 580
BsiSI	CCGG	1 cut(s)	1020
BslFI	GGGAC	2 cut(s)	512, 894
BslI	CCNNNNNNNGG	4 cut(s)	537, 631, 684, 999
BsmAI	GTCTC	2 cut(s)	293, 988
BsmFI	GGGAC	2 cut(s)	512, 894
BsnI	GGCC	3 cut(s)	380, 992, 1023
Bsp119I	TTCGAA	1 cut(s)	1042
Bsp1286I	GDGCHC	2 cut(s)	446, 673
Bsp143I	GATC	4 cut(s)	79, 745, 800, 895
Bsp19I	CCATGG	1 cut(s)	987
BspACI	CCGC	2 cut(s)	510, 957
BspANI	GGCC	3 cut(s)	380, 992, 1023
BspCNI	CTCAG	3 cut(s)	384, 643, 677
BspHI	TCATGA	2 cut(s)	291, 592
BspLI	GGNNCC	3 cut(s)	133, 528, 582
BspMAI	CTGCAG	2 cut(s)	481, 870
BspPI	GGATC	2 cut(s)	740, 808
BspT104I	TTCGAA	1 cut(s)	1042
BspT107I	GGYRCC	2 cut(s)	131, 580
BspTI	CTTAAG	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	1019
BsrI	ACTGG	4 cut(s)	128, 524, 973, 1002
BssAI	RCCGGY	1 cut(s)	1019
BssECI	CCNNGG	3 cut(s)	375, 564, 987
BssMI	GATC	4 cut(s)	79, 745, 800, 895
BssT1I	CCWWGG	3 cut(s)	375, 564, 987
Bst4CI	ACNGT	4 cut(s)	148, 314, 454, 499
BstAFI	CTTAAG	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	1042
BstC8I	GCNNGC	2 cut(s)	382, 957
BstDEI	CTNAG	3 cut(s)	392, 630, 664
BstDSI	CCRYGG	1 cut(s)	987
BstF5I	GGATG	4 cut(s)	332, 528, 550, 749
BstKTI	GATC	4 cut(s)	82, 748, 803, 898
BstMAI	GTCTC	2 cut(s)	293, 988
BstMBI	GATC	4 cut(s)	79, 745, 800, 895
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstSFI	CTRYAG	2 cut(s)	477, 866
BstSLI	GKGCMC	2 cut(s)	446, 673
BstV1I	GCAGC	2 cut(s)	268, 491
BstV2I	GAAGAC	2 cut(s)	681, 955
BstXI	CCANNNNNNTGG	2 cut(s)	502, 977
BsuRI	GGCC	3 cut(s)	380, 992, 1023
BtgI	CCRYGG	1 cut(s)	987
BtsCI	GGATG	4 cut(s)	332, 528, 550, 749
BtsI	GCAGTG	2 cut(s)	846, 936
BtsIMutI	CAGTG	5 cut(s)	121, 389, 495, 846, 936
Cac8I	GCNNGC	2 cut(s)	382, 957
CciI	TCATGA	2 cut(s)	291, 592
Cfr10I	RCCGGY	1 cut(s)	1019
Cfr13I	GGNCC	2 cut(s)	512, 526
CspCI	CAANNNNNGTGG	2 cut(s)	194, 229
CviAII	CATG	6 cut(s)	292, 308, 353, 593, 693, 988
DdeI	CTNAG	3 cut(s)	392, 630, 664
DpnI	GATC	4 cut(s)	81, 747, 802, 897
DpnII	GATC	4 cut(s)	79, 745, 800, 895
EaeI	YGGCCR	3 cut(s)	378, 990, 1021
Eco130I	CCWWGG	3 cut(s)	375, 564, 987
Eco32I	GATATC	2 cut(s)	418, 469
Eco47I	GGWCC	2 cut(s)	512, 526
EcoRV	GATATC	2 cut(s)	418, 469
EcoT14I	CCWWGG	3 cut(s)	375, 564, 987
ErhI	CCWWGG	3 cut(s)	375, 564, 987
FaeI	CATG	6 cut(s)	295, 311, 356, 596, 696, 991
FaqI	GGGAC	2 cut(s)	512, 894
FatI	CATG	6 cut(s)	291, 307, 352, 592, 692, 987
FauI	CCCGC	1 cut(s)	964
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	282, 480
FokI	GGATG	4 cut(s)	339, 535, 557, 736
Fsp4HI	GCNGC	2 cut(s)	282, 480
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	2 cut(s)	282, 480
HaeIII	GGCC	3 cut(s)	380, 992, 1023
HapII	CCGG	1 cut(s)	1020
Hin1II	CATG	6 cut(s)	295, 311, 356, 596, 696, 991
HincII	GTYRAC	2 cut(s)	814, 1063
HindII	GTYRAC	2 cut(s)	814, 1063
HinfI	GANTC	5 cut(s)	4, 52, 110, 862, 981
HpaII	CCGG	1 cut(s)	1020
HphI	GGTGA	5 cut(s)	74, 105, 918, 941, 1009
Hpy166II	GTNNAC	2 cut(s)	814, 1063
Hpy188I	TCNGA	5 cut(s)	153, 540, 745, 805, 913
Hpy188III	TCNNGA	7 cut(s)	92, 218, 292, 433, 472, 593, 778
Hpy8I	GTNNAC	2 cut(s)	814, 1063
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	5 cut(s)	121, 221, 535, 678, 1025
HpyCH4III	ACNGT	4 cut(s)	148, 314, 454, 499
HpyCH4V	TGCA	7 cut(s)	301, 464, 479, 792, 851, 868, 1053
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	3 cut(s)	392, 630, 664
Hsp92II	CATG	6 cut(s)	295, 311, 356, 596, 696, 991
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	79, 745, 800, 895
Lsp1109I	GCAGC	2 cut(s)	268, 491
LweI	GCATC	3 cut(s)	322, 481, 811
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	934
MalI	GATC	4 cut(s)	81, 747, 802, 897
MboI	GATC	4 cut(s)	79, 745, 800, 895
MboII	GAAGA	4 cut(s)	448, 681, 886, 955
MfeI	CAATTG	2 cut(s)	558, 899
MhlI	GDGCHC	2 cut(s)	446, 673
MlsI	TGGCCA	2 cut(s)	380, 992
MluCI	AATT	5 cut(s)	245, 558, 899, 1038, 1054
MluNI	TGGCCA	2 cut(s)	380, 992
MlyI	GAGTC	2 cut(s)	61, 990
MmeI	TCCRAC	3 cut(s)	80, 176, 518
MnlI	CCTC	9 cut(s)	150, 288, 346, 349, 360, 389, 421, 864, 1025
Mox20I	TGGCCA	2 cut(s)	380, 992
MroXI	GAANNNNTTC	1 cut(s)	688
MscI	TGGCCA	2 cut(s)	380, 992
MseI	TTAA	3 cut(s)	261, 347, 720
MslI	CAYNNNNRTG	3 cut(s)	306, 312, 500
Msp20I	TGGCCA	2 cut(s)	380, 992
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	1 cut(s)	1020
MunI	CAATTG	2 cut(s)	558, 899
MwoI	GCNNNNNNNGC	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	987
NdeII	GATC	4 cut(s)	79, 745, 800, 895
NlaIII	CATG	6 cut(s)	295, 311, 356, 596, 696, 991
NlaIV	GGNNCC	3 cut(s)	133, 528, 582
NmuCI	GTSAC	1 cut(s)	934
NspV	TTCGAA	1 cut(s)	1042
PagI	TCATGA	2 cut(s)	291, 592
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	688
PfeI	GAWTC	3 cut(s)	4, 110, 862
PkrI	GCNGC	2 cut(s)	283, 481
PleI	GAGTC	2 cut(s)	60, 989
PpsI	GAGTC	2 cut(s)	60, 989
PspN4I	GGNNCC	3 cut(s)	133, 528, 582
PspPI	GGNCC	2 cut(s)	512, 526
PstI	CTGCAG	2 cut(s)	481, 870
RseI	CAYNNNNRTG	3 cut(s)	306, 312, 500
SaqAI	TTAA	3 cut(s)	261, 347, 720
SatI	GCNGC	2 cut(s)	282, 480
Sau3AI	GATC	4 cut(s)	79, 745, 800, 895
Sau96I	GGNCC	2 cut(s)	512, 526
SchI	GAGTC	2 cut(s)	61, 990
SduI	GDGCHC	2 cut(s)	446, 673
SfaNI	GCATC	3 cut(s)	322, 481, 811
SfcI	CTRYAG	2 cut(s)	477, 866
SfuI	TTCGAA	1 cut(s)	1042
SinI	GGWCC	2 cut(s)	512, 526
SmiMI	CAYNNNNRTG	3 cut(s)	306, 312, 500
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	245, 558, 899, 1038, 1054
SsiI	CCGC	2 cut(s)	510, 957
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	3 cut(s)	375, 564, 987
TaaI	ACNGT	4 cut(s)	148, 314, 454, 499
TaqI	TCGA	4 cut(s)	432, 726, 860, 1042
TasI	AATT	5 cut(s)	245, 558, 899, 1038, 1054
TfiI	GAWTC	3 cut(s)	4, 110, 862
Tru1I	TTAA	3 cut(s)	261, 347, 720
Tru9I	TTAA	3 cut(s)	261, 347, 720
TscAI	CASTG	5 cut(s)	128, 396, 502, 853, 943
TseFI	GTSAC	1 cut(s)	934
TseI	GCWGC	2 cut(s)	281, 479
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	5 cut(s)	17, 609, 681, 774, 1044
TspRI	CASTG	5 cut(s)	128, 396, 502, 853, 943
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	512, 526
XapI	RAATTY	1 cut(s)	1038
XcmI	CCANNNNNNNNNTGG	1 cut(s)	994
XmnI	GAANNNNTTC	1 cut(s)	688
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.