AT1G31320

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004498
Physical Location & Seq
Forward (+)
11212958 .. 11214567
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31320.1

Sequence Viewer

Length: 519 bp
ATGAAAGAAAGTAGCCGGAAGCAAGGAGCTGCGTCACCGTGTGCTGCGTGTAAGCTTTTGCGGCGGCGGTGCGCTCAAGATTGCGTTTTCTCGCCGTATTTTCCGGCCGATGAGCCTCAGAAATTTGCTAATGTTCATAGAGTGTTCGGTGCTAGCAACGTCAACAAGATGCTTCAGGAATTACCAATCCACCAGCGAGGGGACGCTGTGAGCAGCATGGTTTACGAGGCTAATGCAAGAGTGCGGGATCCGGTTTACGGTTGCGTTGGGGCAATTTCGTCCCTCCAGCAACAGATAGATGTGTTGCAAGCTCAGCTAGCTCTAGCTCAAGCTGAGGTGGTGCATCTACGTGTACGCCAGTCGACTAATTTCCCAGGGCACGGACTATGCCCGGATAGTCCGAGTAGCAGCGGGTCACCGTCTTCGAAGCAAGTGAGTCCACAGGACAACAAGGGCATGTTTAGCCATATGGACATTGTGGATGAAGCCAGTTTGGGAGAGTCTATGTGGTCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

172

Amino Acids

18.7

Weight (kDa)

7.61

Isoelectric Point (pI)

70.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 13 - 110 6.5e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 362
AciI CCGC 5 cut(s) 61, 64, 67, 244, 411
AclWI GGATC 2 cut(s) 242, 255
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 158
AdeI CACNNNGTG 1 cut(s) 41
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 3 cut(s) 199, 257, 380
AflIII ACRYGT 1 cut(s) 349
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 7 cut(s) 29, 55, 311, 316, 320, 326, 332
AluI AGCT 7 cut(s) 29, 55, 311, 316, 320, 326, 332
AlwI GGATC 2 cut(s) 242, 255
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 4 cut(s) 29, 44, 213, 408
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 27, 408
AsuII TTCGAA 1 cut(s) 425
AsuNHI GCTAGC 2 cut(s) 152, 316
BaeGI GKGCMC 1 cut(s) 381
BamHI GGATCC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 4 cut(s) 16, 31, 225, 420
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 375
BcnI CCSGG 1 cut(s) 392
BfaI CTAG 4 cut(s) 153, 317, 323, 517
BisI GCNGC 6 cut(s) 30, 45, 62, 65, 214, 409
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 6 cut(s) 31, 46, 63, 66, 215, 410
Bme1390I CCNGG 2 cut(s) 375, 392
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 375, 392
BmsI GCATC 2 cut(s) 159, 352
BmtI GCTAGC 2 cut(s) 156, 320
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 425
BpuEI CTTGAG 2 cut(s) 60, 312
BpuMI CCSGG 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 373, 374
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 257, 380
Bse1I ACTGG 2 cut(s) 358, 489
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 373, 374
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 3 cut(s) 199, 257, 380
BseMII CTCAG 3 cut(s) 131, 324, 326
BseNI ACTGG 2 cut(s) 358, 489
BseSI GKGCMC 1 cut(s) 381
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 16, 31, 225, 420
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 4 cut(s) 16, 104, 251, 392
BslFI GGGAC 2 cut(s) 215, 265
BslI CCNNNNNNNGG 3 cut(s) 199, 257, 380
BsmFI GGGAC 2 cut(s) 215, 265
BsnI GGCC 1 cut(s) 107
Bsp119I TTCGAA 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 1 cut(s) 247
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 5 cut(s) 61, 64, 67, 244, 411
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 3 cut(s) 130, 325, 325
BspLI GGNNCC 1 cut(s) 249
BspOI GCTAGC 2 cut(s) 156, 320
BspPI GGATC 2 cut(s) 242, 255
BspT104I TTCGAA 1 cut(s) 425
BsrI ACTGG 2 cut(s) 358, 489
BssECI CCNNGG 2 cut(s) 373, 374
BssMI GATC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 3 cut(s) 39, 260, 420
BstBAI YACGTR 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 154, 309, 318
BstDEI CTNAG 3 cut(s) 117, 312, 333
BstEII GGTNACC 1 cut(s) 414
BstF5I GGATG 1 cut(s) 487
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 4 cut(s) 61, 313, 317, 462
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 460
BstPI GGTNACC 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 373, 390
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 4 cut(s) 16, 31, 225, 420
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 487
Cac8I GCNNGC 3 cut(s) 154, 309, 318
CfoI GCGC 1 cut(s) 74
CseI GACGC 2 cut(s) 21, 212
Csp6I GTAC 1 cut(s) 353
CviAII CATG 2 cut(s) 217, 457
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 3 cut(s) 117, 312, 333
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
DraIII CACNNNGTG 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
EclXI CGGCCG 1 cut(s) 105
Eco52I CGGCCG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 414
EcoO65I GGTNACC 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 373
FaeI CATG 2 cut(s) 220, 460
FaiI YATR 7 cut(s) 138, 218, 388, 458, 468, 470, 506
FaqI GGGAC 2 cut(s) 215, 265
FatI CATG 2 cut(s) 216, 456
FauI CCCGC 2 cut(s) 237, 404
FauNDI CATATG 1 cut(s) 468
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 6 cut(s) 30, 45, 62, 65, 214, 409
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 6 cut(s) 30, 45, 62, 65, 214, 409
FspBI CTAG 4 cut(s) 153, 317, 323, 517
GlaI GCGC 1 cut(s) 73
GluI GCNGC 6 cut(s) 30, 45, 62, 65, 214, 409
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 1 cut(s) 107
HapII CCGG 4 cut(s) 16, 104, 251, 392
HgaI GACGC 2 cut(s) 21, 212
HhaI GCGC 1 cut(s) 74
Hin1II CATG 2 cut(s) 220, 460
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 2 cut(s) 163, 363
HindII GTYRAC 2 cut(s) 163, 363
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 436, 500
HpaII CCGG 4 cut(s) 16, 104, 251, 392
HphI GGTGA 2 cut(s) 27, 408
Hpy166II GTNNAC 6 cut(s) 163, 223, 256, 353, 363, 440
Hpy188I TCNGA 2 cut(s) 120, 402
Hpy188III TCNNGA 2 cut(s) 77, 176
Hpy8I GTNNAC 6 cut(s) 163, 223, 256, 353, 363, 440
HpyCH4III ACNGT 3 cut(s) 39, 260, 420
HpyCH4IV ACGT 2 cut(s) 159, 349
HpyCH4V TGCA 3 cut(s) 236, 307, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 313, 317, 462
HpyF3I CTNAG 3 cut(s) 117, 312, 333
HpySE526I ACGT 2 cut(s) 159, 349
Hsp92II CATG 2 cut(s) 220, 460
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 4 cut(s) 16, 31, 225, 420
LweI GCATC 2 cut(s) 159, 352
MaeI CTAG 4 cut(s) 153, 317, 323, 517
MaeII ACGT 2 cut(s) 159, 349
MaeIII GTNAC 2 cut(s) 33, 414
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 1 cut(s) 414
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 4 cut(s) 122, 179, 273, 367
MlyI GAGTC 2 cut(s) 445, 509
MnlI CCTC 5 cut(s) 126, 191, 220, 293, 328
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 411
MspI CCGG 4 cut(s) 16, 104, 251, 392
MspR9I CCNGG 2 cut(s) 375, 392
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 4 cut(s) 61, 313, 317, 462
NciI CCSGG 1 cut(s) 392
NdeI CATATG 1 cut(s) 468
NdeII GATC 1 cut(s) 247
NheI GCTAGC 2 cut(s) 152, 316
NlaIII CATG 2 cut(s) 220, 460
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 2 cut(s) 33, 414
NspI RCATGY 1 cut(s) 460
NspV TTCGAA 1 cut(s) 425
PasI CCCWGGG 1 cut(s) 374
PkrI GCNGC 6 cut(s) 31, 46, 63, 66, 215, 410
PleI GAGTC 2 cut(s) 444, 508
PpsI GAGTC 2 cut(s) 444, 508
Ppu21I YACGTR 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 373
PspEI GGTNACC 1 cut(s) 414
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 249
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 348
SalI GTCGAC 1 cut(s) 361
SatI GCNGC 6 cut(s) 30, 45, 62, 65, 214, 409
Sau3AI GATC 1 cut(s) 247
SchI GAGTC 2 cut(s) 445, 509
ScrFI CCNGG 2 cut(s) 375, 392
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 2 cut(s) 159, 352
SfuI TTCGAA 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 2 cut(s) 75, 327
SmoI CTYRAG 2 cut(s) 75, 327
Sse9I AATT 4 cut(s) 122, 179, 273, 367
SsiI CCGC 5 cut(s) 61, 64, 67, 244, 411
SspMI CTAG 4 cut(s) 153, 317, 323, 517
StyD4I CCNGG 2 cut(s) 373, 390
TaaI ACNGT 3 cut(s) 39, 260, 420
TaiI ACGT 2 cut(s) 162, 352
TaqI TCGA 2 cut(s) 362, 425
TasI AATT 4 cut(s) 122, 179, 273, 367
TauI GCSGC 2 cut(s) 64, 67
TseFI GTSAC 2 cut(s) 33, 414
TseI GCWGC 4 cut(s) 29, 44, 213, 408
Tsp45I GTSAC 2 cut(s) 33, 414
TspDTI ATGAA 3 cut(s) 17, 125, 498
TspGWI ACGGA 1 cut(s) 396
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 4 cut(s) 153, 317, 323, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.