Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002561.1

Orthogroup ID

OG0004498

Physical Location & Seq

Genomic Coordinates Reverse (-)

22053 .. 23344

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002561.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgaaggagaatggttgcagtaggaaacagggtgcagcttcaccatgtgcagcttgtaagctactgaggaggaggtgtgcgcaggactgtgtttttgctccttactttcctgcagatgagccccagaagttcgctaatgttcacaaagtcttcggtgccagtaatgtcaacaaaatgttgcaggagctaccggagcaccagagaggagatgcggtgagtagcatggtgtatgaagcaaatgcaagggtccgggacccggtttacgggtgcgtcggggccatatcatctctgcaacaacagattgatgtgcttcaaactcaactcgctctggctcaggctgaggtggtgcaccttagggttaggcagacgcagtccatctccaaccacgggctcagccccgcgagcccaagtaatagcggctcgccgtcgtcgcggttcattggttcacagtcccggcccattttcgacatggatatgatgatggaccatagcagcttgggattgggagagtctatgtggtcctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

175

Amino Acids

19.08

Weight (kDa)

8.2

Isoelectric Point (pI)

68.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31320
fragaria_vesca	FvH4_3g11810 FvH4_3g15570
malus_domestica	MD05G1222100.v1.1 MD05G1259100.v1.1 MD10G1238700.v1.1
prunus_persica	Prupe.4G105700_v2.0.a1 Prupe.4G138200_v2.0.a1
pyrus_communis	pycom05g20480 pycom10g17430 pycom10g19970
rosa_chinensis	RchiOBHm_Chr5g0019231 RchiOBHm_Chr5g0026191
rosa_laevigata	RLG00000032430 RLG00000032911
rosa_multiflora	Rmu_sc0002561.1_g000005 Rmu_sc0002909.1_g000009
rosa_roxburghii	Rroxscaffold_1G00053110 Rroxscaffold_1G00058760 Rroxscaffold_1G00074180
rosa_rugosa	Rorug05G0048500 Rorug05G0091600
rosa_samantha	Rh5AG139900 Rh5AG184400 Rh5BG138900 Rh5BG181200 Rh5CG150300 Rh5DG139500 Rh5DG182800
rosa_wichuraiana	Rw5G012440 Rw5G016690 Rw5G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	2 cut(s)	401, 433
AciI	CCGC	4 cut(s)	212, 399, 417, 433
AdeI	CACNNNGTG	1 cut(s)	47
AfiI	CCNNNNNNNGG	3 cut(s)	256, 263, 387
AgsI	TTSAA	1 cut(s)	314
AluBI	AGCT	5 cut(s)	38, 53, 61, 187, 495
AluI	AGCT	5 cut(s)	38, 53, 61, 187, 495
Alw21I	GWGCWC	2 cut(s)	198, 351
Alw44I	GTGCAC	1 cut(s)	347
AoxI	GGCC	2 cut(s)	276, 455
ApaLI	GTGCAC	1 cut(s)	347
ApeKI	GCWGC	3 cut(s)	35, 50, 492
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	6 cut(s)	247, 253, 276, 456, 484, 519
AsuC2I	CCSGG	3 cut(s)	251, 257, 454
AsuHPI	GGTGA	2 cut(s)	33, 226
AvaII	GGWCC	4 cut(s)	247, 253, 484, 519
AxyI	CCTNAGG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	3 cut(s)	123, 393, 407
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	2 cut(s)	198, 351
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	47, 62, 504
BccI	CCATC	2 cut(s)	383, 475
BceAI	ACGGC	1 cut(s)	409
BcnI	CCSGG	3 cut(s)	251, 257, 454
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	4 cut(s)	36, 51, 418, 493
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	4 cut(s)	37, 52, 419, 494
Bme1390I	CCNGG	3 cut(s)	251, 257, 454
Bme18I	GGWCC	4 cut(s)	247, 253, 484, 519
BmgT120I	GGNCC	6 cut(s)	247, 253, 276, 456, 484, 519
BmiI	GGNNCC	5 cut(s)	157, 248, 254, 255, 277
BmrFI	CCNGG	3 cut(s)	251, 257, 454
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	142
Bpu10I	CCTNAGC	2 cut(s)	333, 339
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuMI	CCSGG	3 cut(s)	251, 257, 454
BsaJI	CCNNGG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 198, 228
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 263, 387
Bse1I	ACTGG	1 cut(s)	159
Bse21I	CCTNAGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	385
BseLI	CCNNNNNNNGG	3 cut(s)	256, 263, 387
BseMII	CTCAG	4 cut(s)	56, 330, 347, 406
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	3 cut(s)	82, 85, 219
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	3 cut(s)	47, 62, 504
BsgI	GTGCAG	2 cut(s)	54, 69
Bsh1236I	CGCG	2 cut(s)	401, 433
BshFI	GGCC	2 cut(s)	278, 457
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	198, 351
BsiSI	CCGG	4 cut(s)	191, 250, 257, 454
BslFI	GGGAC	2 cut(s)	266, 436
BslI	CCNNNNNNNGG	3 cut(s)	256, 263, 387
BsmFI	GGGAC	2 cut(s)	266, 436
BsnI	GGCC	2 cut(s)	278, 457
Bsp1286I	GDGCHC	5 cut(s)	123, 198, 351, 393, 407
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	4 cut(s)	212, 399, 417, 433
BspANI	GGCC	2 cut(s)	278, 457
BspCNI	CTCAG	4 cut(s)	57, 331, 346, 405
BspFNI	CGCG	2 cut(s)	401, 433
BspLI	GGNNCC	5 cut(s)	157, 248, 254, 255, 277
BspMAI	CTGCAG	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	89, 450
BstC8I	GCNNGC	2 cut(s)	403, 422
BstDEI	CTNAG	5 cut(s)	65, 333, 339, 353, 392
BstDSI	CCRYGG	1 cut(s)	385
BstFNI	CGCG	2 cut(s)	401, 433
BstHHI	GCGC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 402, 430
BstSCI	CCNGG	3 cut(s)	249, 255, 452
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	351
BstUI	CGCG	2 cut(s)	401, 433
BstV1I	GCAGC	3 cut(s)	47, 62, 504
BstV2I	GAAGAC	1 cut(s)	142
Bsu36I	CCTNAGG	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	278, 457
BtgI	CCRYGG	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	403, 422
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	6 cut(s)	247, 253, 276, 456, 484, 519
CseI	GACGC	2 cut(s)	259, 376
CviAII	CATG	3 cut(s)	45, 223, 469
DdeI	CTNAG	5 cut(s)	65, 333, 339, 353, 392
DraIII	CACNNNGTG	1 cut(s)	47
Eco24I	GRGCYC	3 cut(s)	123, 393, 407
Eco47I	GGWCC	4 cut(s)	247, 253, 484, 519
Eco81I	CCTNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	253
EcoT38I	GRGCYC	3 cut(s)	123, 393, 407
FaeI	CATG	3 cut(s)	48, 226, 472
FaiI	YATR	8 cut(s)	46, 224, 231, 281, 470, 476, 489, 515
FaqI	GGGAC	2 cut(s)	266, 436
FatI	CATG	3 cut(s)	44, 222, 468
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	4 cut(s)	36, 51, 418, 493
FriOI	GRGCYC	3 cut(s)	123, 393, 407
Fsp4HI	GCNGC	4 cut(s)	36, 51, 418, 493
FspI	TGCGCA	1 cut(s)	81
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	4 cut(s)	36, 51, 418, 493
HaeIII	GGCC	2 cut(s)	278, 457
HapII	CCGG	4 cut(s)	191, 250, 257, 454
HgaI	GACGC	2 cut(s)	259, 376
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	48, 226, 472
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	509
HpaII	CCGG	4 cut(s)	191, 250, 257, 454
HphI	GGTGA	2 cut(s)	33, 226
Hpy166II	GTNNAC	5 cut(s)	142, 169, 262, 349, 446
Hpy8I	GTNNAC	5 cut(s)	142, 169, 262, 349, 446
Hpy99I	CGWCG	3 cut(s)	275, 430, 433
HpyCH4III	ACNGT	2 cut(s)	89, 450
HpyCH4V	TGCA	8 cut(s)	18, 35, 50, 113, 181, 242, 292, 349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 402, 430
HpyF3I	CTNAG	5 cut(s)	65, 333, 339, 353, 392
Hsp92II	CATG	3 cut(s)	48, 226, 472
HspAI	GCGC	1 cut(s)	80
KflI	GGGWCCC	1 cut(s)	253
LmnI	GCTCC	3 cut(s)	103, 184, 193
Lsp1109I	GCAGC	3 cut(s)	47, 62, 504
LweI	GCATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	142
MhlI	GDGCHC	5 cut(s)	123, 198, 351, 393, 407
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	5 cut(s)	60, 63, 66, 197, 334
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	4 cut(s)	191, 250, 257, 454
MspR9I	CCNGG	3 cut(s)	251, 257, 454
MvnI	CGCG	2 cut(s)	401, 433
MwoI	GCNNNNNNNGC	3 cut(s)	193, 402, 430
NciI	CCSGG	3 cut(s)	251, 257, 454
NlaIII	CATG	3 cut(s)	48, 226, 472
NlaIV	GGNNCC	5 cut(s)	157, 248, 254, 255, 277
NsbI	TGCGCA	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	37, 52, 419, 494
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	253
PspN4I	GGNNCC	5 cut(s)	157, 248, 254, 255, 277
PspPI	GGNCC	6 cut(s)	247, 253, 276, 456, 484, 519
PspPPI	RGGWCCY	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	473
SatI	GCNGC	4 cut(s)	36, 51, 418, 493
Sau96I	GGNCC	6 cut(s)	247, 253, 276, 456, 484, 519
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	3 cut(s)	251, 257, 454
SduI	GDGCHC	5 cut(s)	123, 198, 351, 393, 407
SetI	ASST	8 cut(s)	40, 55, 63, 77, 189, 345, 354, 497
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	4 cut(s)	247, 253, 484, 519
SmiMI	CAYNNNNRTG	1 cut(s)	473
SsiI	CCGC	4 cut(s)	212, 399, 417, 433
StyD4I	CCNGG	3 cut(s)	249, 255, 452
TaaI	ACNGT	2 cut(s)	89, 450
TaqI	TCGA	1 cut(s)	465
TauI	GCSGC	1 cut(s)	420
TseI	GCWGC	3 cut(s)	35, 50, 492
TspDTI	ATGAA	3 cut(s)	17, 246, 427
Tth111I	GACNNNGTC	1 cut(s)	370
VneI	GTGCAC	1 cut(s)	347
VpaK11BI	GGWCC	4 cut(s)	247, 253, 484, 519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.