Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002909.1

Orthogroup ID

OG0004498

Physical Location & Seq

Genomic Coordinates Forward (+)

53635 .. 56972

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002909.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaaggagatcagcggtagaaaacaaggtggaatgtctccatgcgcagcatgcaagcttctgagaaggaggtgtgcgcaggattgtgtgtttgctccttattttccagctgatgagcctcacaagtttgcaagtgtgcacaaggtttttggtgctagcaatgtcaacaagatgctacaggaattaccagagcaccagcgcagtgatgcagtgagttcaatggtgtacgaggcaaacgctcgagtaagagaccctgtgtacggctgtgttggtgcaatctcatctctacagcaacagatcgacgtcctccaaactcaactagccattgcacaagctgaggtggtgcacatgaaaatgaatcaattgccttctgcatcatctcccgcagccacatcagaaaacacctctcccatctcagtcaagcaaataatgcctaataataataataattctcaccatcattatcatcctcatcagaccaccaaatccttttttacaatggacatggtggtagatcaggccaattctttgtggtcatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

180

Amino Acids

19.91

Weight (kDa)

8.24

Isoelectric Point (pI)

68.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31320
fragaria_vesca	FvH4_3g11810 FvH4_3g15570
malus_domestica	MD05G1222100.v1.1 MD05G1259100.v1.1 MD10G1238700.v1.1
prunus_persica	Prupe.4G105700_v2.0.a1 Prupe.4G138200_v2.0.a1
pyrus_communis	pycom05g20480 pycom10g17430 pycom10g19970
rosa_chinensis	RchiOBHm_Chr5g0019231 RchiOBHm_Chr5g0026191
rosa_laevigata	RLG00000032430 RLG00000032911
rosa_multiflora	Rmu_sc0002561.1_g000005 Rmu_sc0002909.1_g000009
rosa_roxburghii	Rroxscaffold_1G00053110 Rroxscaffold_1G00058760 Rroxscaffold_1G00074180
rosa_rugosa	Rorug05G0048500 Rorug05G0091600
rosa_samantha	Rh5AG139900 Rh5AG184400 Rh5BG138900 Rh5BG181200 Rh5CG150300 Rh5DG139500 Rh5DG182800
rosa_wichuraiana	Rw5G012440 Rw5G016690 Rw5G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
Acc16I	TGCGCA	2 cut(s)	46, 78
AciI	CCGC	2 cut(s)	15, 384
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	2 cut(s)	227, 260
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	219
AluBI	AGCT	3 cut(s)	58, 110, 335
AluI	AGCT	3 cut(s)	58, 110, 335
Alw21I	GWGCWC	3 cut(s)	141, 195, 348
Alw26I	GTCTC	2 cut(s)	42, 243
Alw44I	GTGCAC	2 cut(s)	137, 344
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	1 cut(s)	519
ApaLI	GTGCAC	2 cut(s)	137, 344
ApeKI	GCWGC	2 cut(s)	47, 386
AspLEI	GCGC	3 cut(s)	47, 79, 201
AsuHPI	GGTGA	1 cut(s)	446
AsuNHI	GCTAGC	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	240
BaeGI	GKGCMC	2 cut(s)	141, 348
Bbv12I	GWGCWC	3 cut(s)	141, 195, 348
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	59, 398
BccI	CCATC	2 cut(s)	419, 465
BceAI	ACGGC	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	42, 243
BfaI	CTAG	3 cut(s)	156, 320, 541
BfmI	CTRYAG	2 cut(s)	176, 287
BisI	GCNGC	2 cut(s)	48, 387
BlsI	GCNGC	2 cut(s)	49, 388
BmeT110I	CYCGRG	1 cut(s)	240
BmsI	GCATC	3 cut(s)	162, 196, 383
BmtI	GCTAGC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse3DI	GCAATG	2 cut(s)	166, 324
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	2 cut(s)	166, 324
BseMII	CTCAG	3 cut(s)	53, 327, 429
BseSI	GKGCMC	2 cut(s)	141, 348
BseXI	GCAGC	2 cut(s)	59, 398
BshFI	GGCC	1 cut(s)	521
BsiHKAI	GWGCWC	3 cut(s)	141, 195, 348
BsiHKCI	CYCGRG	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	42, 243
BsnI	GGCC	1 cut(s)	521
Bso31I	GGTCTC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	3 cut(s)	141, 195, 348
Bsp143I	GATC	3 cut(s)	9, 297, 514
BspACI	CCGC	2 cut(s)	15, 384
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	3 cut(s)	54, 328, 428
BspOI	GCTAGC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	243
BsrDI	GCAATG	2 cut(s)	166, 324
BssMI	GATC	3 cut(s)	9, 297, 514
BssNI	GRCGYC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	52, 56, 157
BstDEI	CTNAG	3 cut(s)	62, 336, 415
BstF5I	GGATG	1 cut(s)	466
BstHHI	GCGC	3 cut(s)	47, 79, 201
BstKTI	GATC	3 cut(s)	12, 300, 517
BstMAI	GTCTC	2 cut(s)	42, 243
BstMBI	GATC	3 cut(s)	9, 297, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 430
BstNSI	RCATGY	1 cut(s)	54
BstSFI	CTRYAG	2 cut(s)	176, 287
BstSLI	GKGCMC	2 cut(s)	141, 348
BstV1I	GCAGC	2 cut(s)	59, 398
BsuRI	GGCC	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	466
BtsI	GCAGTG	2 cut(s)	208, 216
BtsIMutI	CAGTG	2 cut(s)	208, 216
Cac8I	GCNNGC	3 cut(s)	52, 56, 157
CfoI	GCGC	3 cut(s)	47, 79, 201
Csp6I	GTAC	2 cut(s)	226, 259
CviAII	CATG	5 cut(s)	42, 51, 349, 505, 537
CviJI	RGCY	8 cut(s)	58, 110, 118, 264, 323, 335, 389, 521
CviKI_1	RGCY	8 cut(s)	58, 110, 118, 264, 323, 335, 389, 521
CviQI	GTAC	2 cut(s)	226, 259
DdeI	CTNAG	3 cut(s)	62, 336, 415
DpnI	GATC	3 cut(s)	11, 299, 516
DpnII	GATC	3 cut(s)	9, 297, 514
Eco31I	GGTCTC	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	240
FaeI	CATG	5 cut(s)	45, 54, 352, 508, 540
FaiI	YATR	5 cut(s)	43, 52, 350, 506, 538
FatI	CATG	5 cut(s)	41, 50, 348, 504, 536
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	48, 387
FokI	GGATG	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	48, 387
FspBI	CTAG	3 cut(s)	156, 320, 541
FspI	TGCGCA	2 cut(s)	46, 78
GlaI	GCGC	3 cut(s)	46, 78, 200
GluI	GCNGC	2 cut(s)	48, 387
HaeIII	GGCC	1 cut(s)	521
HhaI	GCGC	3 cut(s)	47, 79, 201
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	5 cut(s)	45, 54, 352, 508, 540
Hin6I	GCGC	3 cut(s)	45, 77, 199
HinP1I	GCGC	3 cut(s)	45, 77, 199
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	358
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	5 cut(s)	139, 166, 226, 259, 346
Hpy188I	TCNGA	3 cut(s)	63, 397, 477
Hpy8I	GTNNAC	5 cut(s)	139, 166, 226, 259, 346
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	60, 378
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	8 cut(s)	54, 131, 139, 209, 275, 329, 346, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 430
HpyF3I	CTNAG	3 cut(s)	62, 336, 415
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	5 cut(s)	45, 54, 352, 508, 540
HspAI	GCGC	3 cut(s)	45, 77, 199
Kzo9I	GATC	3 cut(s)	9, 297, 514
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	7 cut(s)	65, 120, 164, 201, 209, 267, 503
Lsp1109I	GCAGC	2 cut(s)	59, 398
LweI	GCATC	3 cut(s)	162, 196, 383
MaeI	CTAG	3 cut(s)	156, 320, 541
MaeII	ACGT	1 cut(s)	303
MalI	GATC	3 cut(s)	11, 299, 516
MboI	GATC	3 cut(s)	9, 297, 514
MfeI	CAATTG	1 cut(s)	362
MhlI	GDGCHC	3 cut(s)	141, 195, 348
MluCI	AATT	4 cut(s)	182, 362, 448, 523
MnlI	CCTC	7 cut(s)	63, 129, 223, 317, 331, 415, 480
MslI	CAYNNNNRTG	1 cut(s)	353
MspA1I	CMGCKG	2 cut(s)	15, 110
MunI	CAATTG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	51, 430
NdeII	GATC	3 cut(s)	9, 297, 514
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	45, 54, 352, 508, 540
NsbI	TGCGCA	2 cut(s)	46, 78
NspI	RCATGY	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	49, 388
PspXI	VCTCGAGB	1 cut(s)	240
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	227, 260
RsaNI	GTAC	2 cut(s)	226, 259
RseI	CAYNNNNRTG	1 cut(s)	353
SatI	GCNGC	2 cut(s)	48, 387
Sau3AI	GATC	3 cut(s)	9, 297, 514
SduI	GDGCHC	3 cut(s)	141, 195, 348
SetI	ASST	9 cut(s)	31, 60, 74, 112, 147, 306, 337, 342, 407
SfaNI	GCATC	3 cut(s)	162, 196, 383
SfcI	CTRYAG	2 cut(s)	176, 287
Sfr274I	CTCGAG	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	4 cut(s)	182, 362, 448, 523
SsiI	CCGC	2 cut(s)	15, 384
SspMI	CTAG	3 cut(s)	156, 320, 541
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	241, 300
TasI	AATT	4 cut(s)	182, 362, 448, 523
TfiI	GAWTC	1 cut(s)	358
TscAI	CASTG	2 cut(s)	208, 216
TseI	GCWGC	2 cut(s)	47, 386
TspDTI	ATGAA	3 cut(s)	17, 365, 371
TspRI	CASTG	2 cut(s)	208, 216
VneI	GTGCAC	2 cut(s)	137, 344
XceI	RCATGY	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	240
XspI	CTAG	3 cut(s)	156, 320, 541
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.