Prupe.4G105700_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0004498
Physical Location & Seq
Reverse (-)
5462280 .. 5464991
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G105700.1

Sequence Viewer

Length: 525 bp
ATGAAGGAGAATGGCAGCAGGAAACAGGGCGCCCCCTCACCCTGTGCAGCATGCAAGCTTCTTAGGAGGAGGTGTGCGCAGGATTGTGTGTTTGCTCCCTATTTCCCTGCTGATGAACCCCAGAAGTTTGCCAATGTTCACAAAGTGTTTGGTGCGAGCAATGTCAACAAGATGTTACAGGAGCTGCCAGAGCACCAGCGTGGAGATGCAGTCAGCAGCATGGTGTATGAAGCAAATGCCAGGGTGCGAGACCCAGTTTATGGGTGTGTAGGGGCAATTTCGTCTTTACAGCAACAAATTGATGTGCTCCAGACCCAACTGGCTCTGGCTCAGGCAGAGGTGGTGCACCTTAGGGTTAGGCAGACTGCATCTTTCTCCAACCATGGGCTGAGCCCGGCTAGCCCAAGTAACAGCGGCTCGCCGTCTTCGAAGTTCATGGGCTCTCAAAGCCGGCCCATTTTCGACATGGATATGATGGTGGACCATACCAGCTTGGGACTGGGAGAGTCCATGTGGTCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

175

Amino Acids

18.95

Weight (kDa)

8.25

Isoelectric Point (pI)

65.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 29
AccB7I CCANNNNNTGG 1 cut(s) 260
AciI CCGC 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 30
AdeI CACNNNGTG 2 cut(s) 44, 145
AfiI CCNNNNNNNGG 2 cut(s) 260, 384
AjnI CCWGG 1 cut(s) 239
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 3 cut(s) 58, 184, 492
AluI AGCT 3 cut(s) 58, 184, 492
Alw21I GWGCWC 3 cut(s) 195, 309, 348
Alw26I GTCTC 1 cut(s) 243
Alw44I GTGCAC 1 cut(s) 344
AlwNI CAGNNNCTG 1 cut(s) 184
AoxI GGCC 1 cut(s) 452
ApaLI GTGCAC 1 cut(s) 344
ApeKI GCWGC 4 cut(s) 15, 47, 184, 216
AspLEI GCGC 2 cut(s) 32, 79
AspS9I GGNCC 2 cut(s) 453, 481
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 1 cut(s) 30
AsuII TTCGAA 1 cut(s) 428
AsuNHI GCTAGC 1 cut(s) 398
AvaII GGWCC 1 cut(s) 481
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 348
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 2 cut(s) 395, 443
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 3 cut(s) 195, 309, 348
BbvI GCAGC 4 cut(s) 27, 59, 171, 228
BccI CCATC 1 cut(s) 469
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 241
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 33
BisI GCNGC 5 cut(s) 16, 48, 185, 217, 415
BlpI GCTNAGC 1 cut(s) 389
BlsI GCNGC 5 cut(s) 17, 49, 186, 218, 416
Bme1390I CCNGG 2 cut(s) 241, 395
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 453, 481
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 2 cut(s) 241, 395
BmrI ACTGGG 2 cut(s) 248, 509
BmsI GCATC 2 cut(s) 196, 377
BmtI GCTAGC 1 cut(s) 402
BmuI ACTGGG 2 cut(s) 248, 509
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 389
Bpu14I TTCGAA 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 240, 382
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 195, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 384
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 3 cut(s) 254, 324, 504
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 240, 382
BseLI CCNNNNNNNGG 2 cut(s) 260, 384
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 344, 380
BseNI ACTGG 3 cut(s) 254, 324, 504
BseRI GAGGAG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 4 cut(s) 27, 59, 171, 228
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 454
BshNI GGYRCC 1 cut(s) 29
BsiHKAI GWGCWC 3 cut(s) 195, 309, 348
BsiSI CCGG 2 cut(s) 395, 451
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 2 cut(s) 260, 384
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 1 cut(s) 454
Bso31I GGTCTC 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 428
Bsp1286I GDGCHC 5 cut(s) 195, 309, 348, 395, 443
Bsp1720I GCTNAGC 1 cut(s) 389
Bsp19I CCATGG 1 cut(s) 382
BspACI CCGC 1 cut(s) 414
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 2 cut(s) 343, 381
BspLI GGNNCC 1 cut(s) 31
BspOI GCTAGC 1 cut(s) 402
BspT104I TTCGAA 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 450
BsrI ACTGG 3 cut(s) 254, 324, 504
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 2 cut(s) 240, 382
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 30
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 6 cut(s) 52, 56, 157, 400, 419, 452
BstDEI CTNAG 4 cut(s) 62, 330, 350, 389
BstDSI CCRYGG 1 cut(s) 382
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 2 cut(s) 32, 79
BstMAI GTCTC 1 cut(s) 243
BstMWI GCNNNNNNNGC 3 cut(s) 190, 399, 447
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 2 cut(s) 239, 393
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 4 cut(s) 27, 59, 171, 228
BstV2I GAAGAC 1 cut(s) 417
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 382
Cac8I GCNNGC 6 cut(s) 52, 56, 157, 400, 419, 452
CaiI CAGNNNCTG 1 cut(s) 184
CfoI GCGC 2 cut(s) 32, 79
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 2 cut(s) 453, 481
CviAII CATG 7 cut(s) 51, 220, 383, 436, 466, 511, 519
DdeI CTNAG 4 cut(s) 62, 330, 350, 389
DinI GGCGCC 1 cut(s) 31
DraIII CACNNNGTG 2 cut(s) 44, 145
Eco130I CCWWGG 1 cut(s) 382
Eco24I GRGCYC 2 cut(s) 395, 443
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 481
Eco81I CCTNAGG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 382
EcoT38I GRGCYC 2 cut(s) 395, 443
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 7 cut(s) 54, 223, 386, 439, 469, 514, 522
FaqI GGGAC 1 cut(s) 510
FatI CATG 7 cut(s) 50, 219, 382, 435, 465, 510, 518
Fnu4HI GCNGC 5 cut(s) 16, 48, 185, 217, 415
FriOI GRGCYC 2 cut(s) 395, 443
Fsp4HI GCNGC 5 cut(s) 16, 48, 185, 217, 415
FspBI CTAG 1 cut(s) 399
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 2 cut(s) 31, 78
GluI GCNGC 5 cut(s) 16, 48, 185, 217, 415
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 1 cut(s) 454
HapII CCGG 2 cut(s) 395, 451
HhaI GCGC 2 cut(s) 32, 79
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 7 cut(s) 54, 223, 386, 439, 469, 514, 522
Hin6I GCGC 2 cut(s) 30, 77
HinP1I GCGC 2 cut(s) 30, 77
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 506
HpaII CCGG 2 cut(s) 395, 451
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 4 cut(s) 139, 166, 346, 481
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 4 cut(s) 139, 166, 346, 481
HpyCH4V TGCA 5 cut(s) 47, 54, 209, 346, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 399, 447
HpyF3I CTNAG 4 cut(s) 62, 330, 350, 389
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 7 cut(s) 54, 223, 386, 439, 469, 514, 522
HspAI GCGC 2 cut(s) 30, 77
KasI GGCGCC 1 cut(s) 29
KroI GCCGGC 1 cut(s) 450
KroNI GCCGGC 1 cut(s) 452
LmnI GCTCC 3 cut(s) 100, 181, 312
Lsp1109I GCAGC 4 cut(s) 27, 59, 171, 228
LweI GCATC 2 cut(s) 196, 377
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 174, 407
MboII GAAGA 1 cut(s) 417
MhlI GDGCHC 5 cut(s) 195, 309, 348, 395, 443
MluCI AATT 2 cut(s) 276, 297
Mly113I GGCGCC 1 cut(s) 30
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 4 cut(s) 46, 60, 63, 331
MroNI GCCGGC 1 cut(s) 450
MslI CAYNNNNRTG 2 cut(s) 198, 470
MspA1I CMGCKG 1 cut(s) 414
MspI CCGG 2 cut(s) 395, 451
MspR9I CCNGG 2 cut(s) 241, 395
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 3 cut(s) 190, 399, 447
NaeI GCCGGC 1 cut(s) 452
NarI GGCGCC 1 cut(s) 30
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 382
NgoMIV GCCGGC 1 cut(s) 450
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 7 cut(s) 54, 223, 386, 439, 469, 514, 522
NlaIV GGNNCC 1 cut(s) 31
NsbI TGCGCA 1 cut(s) 78
NspI RCATGY 1 cut(s) 54
NspV TTCGAA 1 cut(s) 428
OliI CACNNNNGTG 1 cut(s) 198
PaeI GCATGC 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 425
PdiI GCCGGC 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 5 cut(s) 17, 49, 186, 218, 416
PleI GAGTC 1 cut(s) 514
PluTI GGCGCC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 514
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 2 cut(s) 453, 481
PstNI CAGNNNCTG 1 cut(s) 184
RseI CAYNNNNRTG 2 cut(s) 198, 470
SatI GCNGC 5 cut(s) 16, 48, 185, 217, 415
Sau96I GGNCC 2 cut(s) 453, 481
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 2 cut(s) 241, 395
SduI GDGCHC 5 cut(s) 195, 309, 348, 395, 443
SetI ASST 6 cut(s) 60, 74, 186, 342, 351, 494
SfaNI GCATC 2 cut(s) 196, 377
SfoI GGCGCC 1 cut(s) 31
SfuI TTCGAA 1 cut(s) 428
SinI GGWCC 1 cut(s) 481
SmiMI CAYNNNNRTG 2 cut(s) 198, 470
SphI GCATGC 1 cut(s) 54
Sse9I AATT 2 cut(s) 276, 297
SsiI CCGC 1 cut(s) 414
SspDI GGCGCC 1 cut(s) 29
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 239, 393
StyI CCWWGG 1 cut(s) 382
TaqI TCGA 2 cut(s) 428, 462
TasI AATT 2 cut(s) 276, 297
TauI GCSGC 1 cut(s) 417
TseI GCWGC 4 cut(s) 15, 47, 184, 216
TspDTI ATGAA 4 cut(s) 17, 129, 243, 424
Van91I CCANNNNNTGG 1 cut(s) 260
VneI GTGCAC 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 481
XceI RCATGY 1 cut(s) 54
XcmI CCANNNNNNNNNTGG 2 cut(s) 463, 496
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.