Rroxscaffold_1G00053110

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004498
Physical Location & Seq
Forward (+)
73975320 .. 73979557
4238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053110.1

Sequence Viewer

Length: 555 bp
ATGAAGGAGATCAGTGGTAGAAAACAAGGTGGAATGTCTCCATGCGCAGCATGCAAGCTTCTGAGAAGGAGGTGTGCGCAGGATTGTGTGTTTGCTCCTTATTTTCCAGCTGATGAGCCTCACAAGTTTGCAAGTGTGCACAAGGTTTTTGGTGCTAGCAATGTCAACAAGATGCTACAGGAATTACCAGAGCACCAGCGCAGTGATGCAGTGAGTTCGATGGTGTACGAGGCAAACGCTCGAGTAAGAGACCCTGTGTACGGCTGTGTTGGTGCAATCTCATCTCTACAGCAACAGATCGACGTCCTCCAAACTCAACTGGCCATTGCACAAGCTGAGGTGGTGCACATGAAAATGAATCAATTGCCTTCTGCATCATCTCCCGCAGCCACATCAGAAAACACTTCTCCCATCTCAGTCAAGCAAATAATGCCTAATAATAATAATAATAATAATAATAATTCTCACCATCATTATCATCCTCATCAGACCACCAAATCCTTTTTTACAATGGACATGGTGGTAGATCAGGCCAATTCTTTGTGGTCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

184

Amino Acids

20.37

Weight (kDa)

8.24

Isoelectric Point (pI)

67.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 14 - 111 1.6e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 306
Acc16I TGCGCA 2 cut(s) 46, 78
AciI CCGC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 227, 260
AfiI CCNNNNNNNGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 58, 110, 335
AluI AGCT 3 cut(s) 58, 110, 335
Alw21I GWGCWC 3 cut(s) 141, 195, 348
Alw26I GTCTC 2 cut(s) 42, 243
Alw44I GTGCAC 2 cut(s) 137, 344
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 2 cut(s) 321, 531
ApaLI GTGCAC 2 cut(s) 137, 344
ApeKI GCWGC 2 cut(s) 47, 386
AspLEI GCGC 3 cut(s) 47, 79, 201
AsuHPI GGTGA 1 cut(s) 458
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 141, 348
BalI TGGCCA 1 cut(s) 323
Bbv12I GWGCWC 3 cut(s) 141, 195, 348
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 59, 398
BccI CCATC 3 cut(s) 214, 419, 477
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 2 cut(s) 42, 243
BfaI CTAG 2 cut(s) 156, 553
BfmI CTRYAG 2 cut(s) 176, 287
BisI GCNGC 2 cut(s) 48, 387
BlsI GCNGC 2 cut(s) 49, 388
BmeT110I CYCGRG 1 cut(s) 240
BmsI GCATC 3 cut(s) 162, 196, 383
BmtI GCTAGC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 2 cut(s) 166, 324
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 2 cut(s) 166, 324
BseMII CTCAG 3 cut(s) 53, 327, 429
BseNI ACTGG 1 cut(s) 324
BseSI GKGCMC 2 cut(s) 141, 348
BseXI GCAGC 2 cut(s) 59, 398
BshFI GGCC 2 cut(s) 323, 533
BsiHKAI GWGCWC 3 cut(s) 141, 195, 348
BsiHKCI CYCGRG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 42, 243
BsnI GGCC 2 cut(s) 323, 533
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 3 cut(s) 141, 195, 348
Bsp143I GATC 3 cut(s) 9, 297, 526
BspACI CCGC 1 cut(s) 384
BspANI GGCC 2 cut(s) 323, 533
BspCNI CTCAG 3 cut(s) 54, 328, 428
BspOI GCTAGC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 166, 324
BsrI ACTGG 1 cut(s) 324
BssMI GATC 3 cut(s) 9, 297, 526
BssNI GRCGYC 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 430
BstC8I GCNNGC 3 cut(s) 52, 56, 157
BstDEI CTNAG 3 cut(s) 62, 336, 415
BstF5I GGATG 1 cut(s) 478
BstHHI GCGC 3 cut(s) 47, 79, 201
BstKTI GATC 3 cut(s) 12, 300, 529
BstMAI GTCTC 2 cut(s) 42, 243
BstMBI GATC 3 cut(s) 9, 297, 526
BstMWI GCNNNNNNNGC 2 cut(s) 51, 430
BstNSI RCATGY 1 cut(s) 54
BstSFI CTRYAG 2 cut(s) 176, 287
BstSLI GKGCMC 2 cut(s) 141, 348
BstV1I GCAGC 2 cut(s) 59, 398
BsuRI GGCC 2 cut(s) 323, 533
BtsCI GGATG 1 cut(s) 478
BtsI GCAGTG 2 cut(s) 208, 216
BtsIMutI CAGTG 3 cut(s) 19, 208, 216
Cac8I GCNNGC 3 cut(s) 52, 56, 157
CfoI GCGC 3 cut(s) 47, 79, 201
Csp6I GTAC 2 cut(s) 226, 259
CviAII CATG 5 cut(s) 42, 51, 349, 517, 549
CviJI RGCY 8 cut(s) 58, 110, 118, 264, 323, 335, 389, 533
CviKI_1 RGCY 8 cut(s) 58, 110, 118, 264, 323, 335, 389, 533
CviQI GTAC 2 cut(s) 226, 259
DdeI CTNAG 3 cut(s) 62, 336, 415
DpnI GATC 3 cut(s) 11, 299, 528
DpnII GATC 3 cut(s) 9, 297, 526
EaeI YGGCCR 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 240
FaeI CATG 5 cut(s) 45, 54, 352, 520, 552
FaiI YATR 5 cut(s) 43, 52, 350, 518, 550
FatI CATG 5 cut(s) 41, 50, 348, 516, 548
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 48, 387
FokI GGATG 1 cut(s) 465
Fsp4HI GCNGC 2 cut(s) 48, 387
FspBI CTAG 2 cut(s) 156, 553
FspI TGCGCA 2 cut(s) 46, 78
GlaI GCGC 3 cut(s) 46, 78, 200
GluI GCNGC 2 cut(s) 48, 387
HaeIII GGCC 2 cut(s) 323, 533
HhaI GCGC 3 cut(s) 47, 79, 201
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 5 cut(s) 45, 54, 352, 520, 552
Hin6I GCGC 3 cut(s) 45, 77, 199
HinP1I GCGC 3 cut(s) 45, 77, 199
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 358
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 5 cut(s) 139, 166, 226, 259, 346
Hpy188I TCNGA 3 cut(s) 63, 397, 489
Hpy8I GTNNAC 5 cut(s) 139, 166, 226, 259, 346
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 60, 378
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 8 cut(s) 54, 131, 139, 209, 275, 329, 346, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 430
HpyF3I CTNAG 3 cut(s) 62, 336, 415
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 5 cut(s) 45, 54, 352, 520, 552
HspAI GCGC 3 cut(s) 45, 77, 199
Kzo9I GATC 3 cut(s) 9, 297, 526
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 65, 120, 164, 201, 209, 267, 305, 515
Lsp1109I GCAGC 2 cut(s) 59, 398
LweI GCATC 3 cut(s) 162, 196, 383
MaeI CTAG 2 cut(s) 156, 553
MaeII ACGT 1 cut(s) 303
MalI GATC 3 cut(s) 11, 299, 528
MboI GATC 3 cut(s) 9, 297, 526
MfeI CAATTG 1 cut(s) 362
MhlI GDGCHC 3 cut(s) 141, 195, 348
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 4 cut(s) 182, 362, 460, 535
MluNI TGGCCA 1 cut(s) 323
MnlI CCTC 6 cut(s) 63, 129, 223, 317, 331, 492
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 110
MunI CAATTG 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 51, 430
NdeII GATC 3 cut(s) 9, 297, 526
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 5 cut(s) 45, 54, 352, 520, 552
NsbI TGCGCA 2 cut(s) 46, 78
NspI RCATGY 1 cut(s) 54
PaeI GCATGC 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 240
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 2 cut(s) 49, 388
PspXI VCTCGAGB 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 227, 260
RsaNI GTAC 2 cut(s) 226, 259
RseI CAYNNNNRTG 1 cut(s) 353
SatI GCNGC 2 cut(s) 48, 387
Sau3AI GATC 3 cut(s) 9, 297, 526
SduI GDGCHC 3 cut(s) 141, 195, 348
SetI ASST 8 cut(s) 31, 60, 74, 112, 147, 306, 337, 342
SfaNI GCATC 3 cut(s) 162, 196, 383
SfcI CTRYAG 2 cut(s) 176, 287
Sfr274I CTCGAG 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SphI GCATGC 1 cut(s) 54
Sse9I AATT 4 cut(s) 182, 362, 460, 535
SsiI CCGC 1 cut(s) 384
SspMI CTAG 2 cut(s) 156, 553
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 218, 241, 300
TasI AATT 4 cut(s) 182, 362, 460, 535
TfiI GAWTC 1 cut(s) 358
TscAI CASTG 3 cut(s) 19, 208, 216
TseI GCWGC 2 cut(s) 47, 386
TspDTI ATGAA 3 cut(s) 17, 365, 371
TspRI CASTG 3 cut(s) 19, 208, 216
VneI GTGCAC 2 cut(s) 137, 344
XceI RCATGY 1 cut(s) 54
XhoI CTCGAG 1 cut(s) 240
XspI CTAG 2 cut(s) 156, 553
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.