FvH4_3g15570

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004498
Physical Location & Seq
Reverse (-)
9757244 .. 9760057
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15570.t1

Sequence Viewer

Length: 534 bp
ATGAAGGAGATCAGTGGAAGAAAACAAGGTGGAATGTCTCCATGCGCAGCATGCAAGCTTCTGAGAAGGAGGTGTGCGCAGGATTGTGTGTTTGCTCCTTATTTTCCAGCTGATGAGCCTCACAAGTTTGCAAGTGTGCACAAGGTTTTTGGTGCTAGCAATGTTAATAAGATGCTACAGGAATTACCGGAGCAGCAGCGCAGTGATGCCGTGAGTTCGATGGTGTATGAAGCAAACGCTCGAGTGAGAGACCCTGTGTACGGTTGTGTTGGTGCAATCTCATCTCTGCAGCAACAGATCGATGTCCTGCAAACTCAACTGGCCATCGCACAAGCTGAGGTCGTGCATATGAAAATGAATCAATTCCCTTCTGCATCATCTCCCGCCGCAACCACATCAGAAAACACCTCCCCCGTCTCAGTCATGCCTAACAATAACAATTCTCAACATCATTATCATCCTCATCAGAGCACCAAATCCTTTTTTACAATGGATATGGTGGTAGATCAGGCCAATTCTTTGTGGTCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

178

Amino Acids

19.52

Weight (kDa)

7.67

Isoelectric Point (pI)

75.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 14 - 111 1.6e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 46, 78
AciI CCGC 2 cut(s) 384, 387
AcoI YGGCCR 1 cut(s) 321
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 58, 110, 335
AluI AGCT 3 cut(s) 58, 110, 335
Alw21I GWGCWC 2 cut(s) 141, 473
Alw26I GTCTC 3 cut(s) 42, 243, 421
Alw44I GTGCAC 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 2 cut(s) 321, 510
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 4 cut(s) 47, 193, 196, 289
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 3 cut(s) 47, 79, 201
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 141
BalI TGGCCA 1 cut(s) 323
Bbv12I GWGCWC 2 cut(s) 141, 473
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 4 cut(s) 59, 205, 208, 301
BccI CCATC 2 cut(s) 214, 332
BceAI ACGGC 1 cut(s) 194
BcoDI GTCTC 3 cut(s) 42, 243, 421
BfaI CTAG 2 cut(s) 156, 532
BfmI CTRYAG 2 cut(s) 176, 287
BisI GCNGC 5 cut(s) 48, 194, 197, 290, 387
BlsI GCNGC 5 cut(s) 49, 195, 198, 291, 388
BmeT110I CYCGRG 1 cut(s) 240
BmsI GCATC 3 cut(s) 162, 196, 383
BmtI GCTAGC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 336
Bsa29I ATCGAT 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 300
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 3 cut(s) 53, 327, 432
BseNI ACTGG 1 cut(s) 324
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 4 cut(s) 59, 205, 208, 301
BshFI GGCC 2 cut(s) 323, 512
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 2 cut(s) 141, 473
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 3 cut(s) 42, 243, 421
BsmBI CGTCTC 1 cut(s) 421
BsnI GGCC 2 cut(s) 323, 512
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 141, 473
Bsp143I GATC 3 cut(s) 9, 297, 505
BspACI CCGC 2 cut(s) 384, 387
BspANI GGCC 2 cut(s) 323, 512
BspCNI CTCAG 3 cut(s) 54, 328, 431
BspDI ATCGAT 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 291
BspOI GCTAGC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 166
BsrI ACTGG 1 cut(s) 324
BssMI GATC 3 cut(s) 9, 297, 505
Bst4CI ACNGT 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 52, 56, 157
BstDEI CTNAG 3 cut(s) 62, 336, 418
BstF5I GGATG 1 cut(s) 457
BstHHI GCGC 3 cut(s) 47, 79, 201
BstKTI GATC 3 cut(s) 12, 300, 508
BstMAI GTCTC 3 cut(s) 42, 243, 421
BstMBI GATC 3 cut(s) 9, 297, 505
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 54
BstSFI CTRYAG 2 cut(s) 176, 287
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 59, 205, 208, 301
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 2 cut(s) 323, 512
BsuTUI ATCGAT 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 1 cut(s) 457
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 19, 208
Cac8I GCNNGC 3 cut(s) 52, 56, 157
CfoI GCGC 3 cut(s) 47, 79, 201
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 1 cut(s) 259
CviAII CATG 4 cut(s) 42, 51, 424, 528
CviJI RGCY 6 cut(s) 58, 110, 118, 323, 335, 512
CviKI_1 RGCY 6 cut(s) 58, 110, 118, 323, 335, 512
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 3 cut(s) 62, 336, 418
DpnI GATC 3 cut(s) 11, 299, 507
DpnII GATC 3 cut(s) 9, 297, 505
EaeI YGGCCR 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 421
FaeI CATG 4 cut(s) 45, 54, 427, 531
FaiI YATR 8 cut(s) 43, 52, 228, 348, 350, 425, 497, 529
FatI CATG 4 cut(s) 41, 50, 423, 527
FauI CCCGC 1 cut(s) 391
FauNDI CATATG 1 cut(s) 348
Fnu4HI GCNGC 5 cut(s) 48, 194, 197, 290, 387
FokI GGATG 1 cut(s) 444
Fsp4HI GCNGC 5 cut(s) 48, 194, 197, 290, 387
FspBI CTAG 2 cut(s) 156, 532
FspI TGCGCA 2 cut(s) 46, 78
GlaI GCGC 3 cut(s) 46, 78, 200
GluI GCNGC 5 cut(s) 48, 194, 197, 290, 387
HaeIII GGCC 2 cut(s) 323, 512
HapII CCGG 1 cut(s) 188
HhaI GCGC 3 cut(s) 47, 79, 201
Hin1II CATG 4 cut(s) 45, 54, 427, 531
Hin6I GCGC 3 cut(s) 45, 77, 199
HinP1I GCGC 3 cut(s) 45, 77, 199
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 358
HpaII CCGG 1 cut(s) 188
Hpy166II GTNNAC 2 cut(s) 139, 259
Hpy188I TCNGA 3 cut(s) 63, 400, 468
Hpy8I GTNNAC 2 cut(s) 139, 259
HpyAV CCTTC 2 cut(s) 60, 378
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 8 cut(s) 54, 131, 139, 275, 289, 310, 346, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 3 cut(s) 62, 336, 418
Hsp92II CATG 4 cut(s) 45, 54, 427, 531
HspAI GCGC 3 cut(s) 45, 77, 199
Kzo9I GATC 3 cut(s) 9, 297, 505
LmnI GCTCC 2 cut(s) 100, 190
LpnPI CCDG 8 cut(s) 65, 120, 164, 201, 267, 305, 320, 494
Lsp1109I GCAGC 4 cut(s) 59, 205, 208, 301
LweI GCATC 3 cut(s) 162, 196, 383
MaeI CTAG 2 cut(s) 156, 532
MalI GATC 3 cut(s) 11, 299, 507
MboI GATC 3 cut(s) 9, 297, 505
MboII GAAGA 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 141, 473
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 4 cut(s) 182, 362, 439, 514
MluNI TGGCCA 1 cut(s) 323
MnlI CCTC 5 cut(s) 63, 129, 331, 418, 471
Mox20I TGGCCA 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 362
MscI TGGCCA 1 cut(s) 323
MseI TTAA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeI CATATG 1 cut(s) 348
NdeII GATC 3 cut(s) 9, 297, 505
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 4 cut(s) 45, 54, 427, 531
NsbI TGCGCA 2 cut(s) 46, 78
NspI RCATGY 1 cut(s) 54
PaeI GCATGC 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 5 cut(s) 49, 195, 198, 291, 388
PspXI VCTCGAGB 1 cut(s) 240
PstI CTGCAG 1 cut(s) 291
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 5 cut(s) 48, 194, 197, 290, 387
Sau3AI GATC 3 cut(s) 9, 297, 505
SduI GDGCHC 2 cut(s) 141, 473
SetI ASST 8 cut(s) 31, 60, 74, 112, 147, 337, 342, 410
SfaNI GCATC 3 cut(s) 162, 196, 383
SfcI CTRYAG 2 cut(s) 176, 287
Sfr274I CTCGAG 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SphI GCATGC 1 cut(s) 54
Sse9I AATT 4 cut(s) 182, 362, 439, 514
SsiI CCGC 2 cut(s) 384, 387
SspMI CTAG 2 cut(s) 156, 532
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 3 cut(s) 218, 241, 300
TasI AATT 4 cut(s) 182, 362, 439, 514
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 2 cut(s) 19, 208
TseI GCWGC 4 cut(s) 47, 193, 196, 289
TspDTI ATGAA 4 cut(s) 17, 243, 365, 371
TspRI CASTG 2 cut(s) 19, 208
VneI GTGCAC 1 cut(s) 137
XceI RCATGY 1 cut(s) 54
XhoI CTCGAG 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 156, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.