Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004498

Physical Location & Seq

Genomic Coordinates Reverse (-)

7693174 .. 7696786

Gene Structure 3613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G138200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGGAGAGTGGTAGAAAACAAGGTGCTATGTCTCCATGCGCAGCATGCAAGCTTCTGAGAAGGAGATGTGCGCAGGATTGCGTGTTTGCTCCTTATTTTCCAGCTGACGAGCCCCAGAAGTTTGCCAGTGTGCACAAGGTTTTTGGTGCCAGCAATGTCAACAAGATGCTACAGGAATTACCAGAGCACCAGCGCAGTGATGCAGTGAGCTCCATGGTGTACGAAGCAAATGCCAGAGTGAGGGATCCGGTGTATGGCTGTGTAGGAGCAATCTCATCTTTACAACAACAAATCGATGCCCTCCAAACCCAATTGGCCATTGCTCAAGCTGAGGTGGTGCACATGAGAATGGGCCAATTCTCAACTTCATCAACAACATCCAATGCTGCCACCACCACCACTTGTTCACCTGATCAAAAATCAACGGCTCCTAATCATTCTCATCATCATAATCATCAGACCACCAAATCCTTTTTTACCATGGACATGGTGGTTGATCAGGCCAATATGGGAGAGTCTTTGTGGTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

179

Amino Acids

19.54

Weight (kDa)

7.66

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31320
fragaria_vesca	FvH4_3g11810 FvH4_3g15570
malus_domestica	MD05G1222100.v1.1 MD05G1259100.v1.1 MD10G1238700.v1.1
prunus_persica	Prupe.4G105700_v2.0.a1 Prupe.4G138200_v2.0.a1
pyrus_communis	pycom05g20480 pycom10g17430 pycom10g19970
rosa_chinensis	RchiOBHm_Chr5g0019231 RchiOBHm_Chr5g0026191
rosa_laevigata	RLG00000032430 RLG00000032911
rosa_multiflora	Rmu_sc0002561.1_g000005 Rmu_sc0002909.1_g000009
rosa_roxburghii	Rroxscaffold_1G00053110 Rroxscaffold_1G00058760 Rroxscaffold_1G00074180
rosa_rugosa	Rorug05G0048500 Rorug05G0091600
rosa_samantha	Rh5AG139900 Rh5AG184400 Rh5BG138900 Rh5BG181200 Rh5CG150300 Rh5DG139500 Rh5DG182800
rosa_wichuraiana	Rw5G012440 Rw5G016690 Rw5G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	43, 75
AccB1I	GGYRCC	1 cut(s)	149
AclWI	GGATC	2 cut(s)	242, 255
AcoI	YGGCCR	1 cut(s)	318
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	243, 257
AluBI	AGCT	4 cut(s)	55, 107, 213, 332
AluI	AGCT	4 cut(s)	55, 107, 213, 332
Alw21I	GWGCWC	4 cut(s)	138, 192, 215, 345
Alw26I	GTCTC	1 cut(s)	39
Alw44I	GTGCAC	2 cut(s)	134, 341
AlwI	GGATC	2 cut(s)	242, 255
AoxI	GGCC	3 cut(s)	318, 355, 504
ApaLI	GTGCAC	2 cut(s)	134, 341
ApeKI	GCWGC	2 cut(s)	44, 389
AspLEI	GCGC	3 cut(s)	44, 76, 198
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	402
BaeGI	GKGCMC	2 cut(s)	138, 345
BalI	TGGCCA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	117, 215
Bbv12I	GWGCWC	4 cut(s)	138, 192, 215, 345
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	56, 376
BceAI	ACGGC	1 cut(s)	444
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BclI	TGATCA	2 cut(s)	415, 499
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	173
BisI	GCNGC	2 cut(s)	45, 390
BlsI	GCNGC	2 cut(s)	46, 391
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	3 cut(s)	151, 249, 432
BmsI	GCATC	3 cut(s)	159, 193, 289
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	216, 483
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 257
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	2 cut(s)	163, 321
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	216, 483
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	2 cut(s)	243, 257
BseMI	GCAATG	2 cut(s)	163, 321
BseMII	CTCAG	2 cut(s)	50, 324
BseNI	ACTGG	1 cut(s)	129
BseSI	GKGCMC	2 cut(s)	138, 345
BseXI	GCAGC	2 cut(s)	56, 376
BshFI	GGCC	3 cut(s)	320, 357, 506
BshNI	GGYRCC	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	4 cut(s)	138, 192, 215, 345
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	243, 257
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	320, 357, 506
Bsp1286I	GDGCHC	5 cut(s)	117, 138, 192, 215, 345
Bsp143I	GATC	3 cut(s)	247, 415, 499
Bsp19I	CCATGG	2 cut(s)	216, 483
BspANI	GGCC	3 cut(s)	320, 357, 506
BspCNI	CTCAG	2 cut(s)	51, 325
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	151, 249, 432
BspPI	GGATC	2 cut(s)	242, 255
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	163, 321
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	216, 483
BssMI	GATC	3 cut(s)	247, 415, 499
BssT1I	CCWWGG	2 cut(s)	216, 483
BstC8I	GCNNGC	3 cut(s)	49, 53, 154
BstDEI	CTNAG	2 cut(s)	59, 333
BstDSI	CCRYGG	2 cut(s)	216, 483
BstF5I	GGATG	1 cut(s)	380
BstHHI	GCGC	3 cut(s)	44, 76, 198
BstKTI	GATC	3 cut(s)	250, 418, 502
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	3 cut(s)	247, 415, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	2 cut(s)	138, 345
BstV1I	GCAGC	2 cut(s)	56, 376
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	320, 357, 506
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	2 cut(s)	216, 483
BtsCI	GGATG	1 cut(s)	380
BtsI	GCAGTG	2 cut(s)	205, 213
BtsIMutI	CAGTG	3 cut(s)	136, 205, 213
Cac8I	GCNNGC	3 cut(s)	49, 53, 154
CfoI	GCGC	3 cut(s)	44, 76, 198
Cfr13I	GGNCC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	7 cut(s)	39, 48, 217, 346, 484, 490, 531
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	2 cut(s)	59, 333
DpnI	GATC	3 cut(s)	249, 417, 501
DpnII	GATC	3 cut(s)	247, 415, 499
EaeI	YGGCCR	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	216, 483
Eco24I	GRGCYC	2 cut(s)	117, 215
Eco53kI	GAGCTC	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	216, 483
EcoT38I	GRGCYC	2 cut(s)	117, 215
ErhI	CCWWGG	2 cut(s)	216, 483
FaeI	CATG	7 cut(s)	42, 51, 220, 349, 487, 493, 534
FatI	CATG	7 cut(s)	38, 47, 216, 345, 483, 489, 530
FbaI	TGATCA	2 cut(s)	415, 499
Fnu4HI	GCNGC	2 cut(s)	45, 390
FokI	GGATG	1 cut(s)	367
FriOI	GRGCYC	2 cut(s)	117, 215
Fsp4HI	GCNGC	2 cut(s)	45, 390
FspI	TGCGCA	2 cut(s)	43, 75
GlaI	GCGC	3 cut(s)	43, 75, 197
GluI	GCNGC	2 cut(s)	45, 390
HaeIII	GGCC	3 cut(s)	320, 357, 506
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	3 cut(s)	44, 76, 198
Hin1II	CATG	7 cut(s)	42, 51, 220, 349, 487, 493, 534
Hin6I	GCGC	3 cut(s)	42, 74, 196
HinP1I	GCGC	3 cut(s)	42, 74, 196
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	402
Hpy166II	GTNNAC	5 cut(s)	136, 163, 223, 343, 410
Hpy188I	TCNGA	2 cut(s)	60, 462
Hpy8I	GTNNAC	5 cut(s)	136, 163, 223, 343, 410
HpyAV	CCTTC	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	51, 136, 206, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	2 cut(s)	59, 333
Hsp92II	CATG	7 cut(s)	42, 51, 220, 349, 487, 493, 534
HspAI	GCGC	3 cut(s)	42, 74, 196
Ksp22I	TGATCA	2 cut(s)	415, 499
Kzo9I	GATC	3 cut(s)	247, 415, 499
LmnI	GCTCC	4 cut(s)	97, 218, 269, 436
Lsp1109I	GCAGC	2 cut(s)	56, 376
LweI	GCATC	3 cut(s)	159, 193, 289
MalI	GATC	3 cut(s)	249, 417, 501
MboI	GATC	3 cut(s)	247, 415, 499
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	5 cut(s)	117, 138, 192, 215, 345
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	3 cut(s)	179, 314, 359
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	527
MnlI	CCTC	3 cut(s)	237, 314, 328
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
MslI	CAYNNNNRTG	2 cut(s)	350, 488
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	48
NcoI	CCATGG	2 cut(s)	216, 483
NdeII	GATC	3 cut(s)	247, 415, 499
NlaIII	CATG	7 cut(s)	42, 51, 220, 349, 487, 493, 534
NlaIV	GGNNCC	3 cut(s)	151, 249, 432
NsbI	TGCGCA	2 cut(s)	43, 75
NspI	RCATGY	1 cut(s)	51
PaeI	GCATGC	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	46, 391
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
Psp124BI	GAGCTC	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	151, 249, 432
PspPI	GGNCC	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	2 cut(s)	350, 488
SacI	GAGCTC	1 cut(s)	215
SatI	GCNGC	2 cut(s)	45, 390
Sau3AI	GATC	3 cut(s)	247, 415, 499
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	527
SduI	GDGCHC	5 cut(s)	117, 138, 192, 215, 345
SetI	ASST	8 cut(s)	28, 57, 109, 144, 215, 334, 339, 415
SfaNI	GCATC	3 cut(s)	159, 193, 289
SfcI	CTRYAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	350, 488
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SphI	GCATGC	1 cut(s)	51
Sse9I	AATT	3 cut(s)	179, 314, 359
SstI	GAGCTC	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	216, 483
TaqI	TCGA	1 cut(s)	297
TasI	AATT	3 cut(s)	179, 314, 359
TscAI	CASTG	3 cut(s)	136, 205, 213
TseI	GCWGC	2 cut(s)	44, 389
TspDTI	ATGAA	2 cut(s)	17, 360
TspRI	CASTG	3 cut(s)	136, 205, 213
VneI	GTGCAC	2 cut(s)	134, 341
XceI	RCATGY	1 cut(s)	51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.