Rh5DG182800

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004498
Physical Location & Seq
Reverse (-)
20264483 .. 20268138
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG182800.1

Sequence Viewer

Length: 543 bp
ATGAAGGAGATCAGTGGTAGAAAACAAGGTGGAATGTCTCCATGCGCAGCATGCAAGCTTCTGAGAAGGAGGTGTGCGCAGGATTGTGTGTTTGCTCCTTATTTTCCAGCTGATGAGCCTCACAAGTTTGCAAGTGTGCACAAGGTTTTTGGTGCTAGCAATGTCAACAAGATGCTACAGGAATTACCAGAGCACCAGCGCAGTGATGCAGTGAGTTCGATGGTGTACGAGGCAAACGCTCGAGTAAGAGACCCTGTGTACGGCTGTGTTGGTGCAATCTCATCTCTACAGCAACAGATCGACGTCCTCCAAACTCAACTGGCCATTGCACAAGCTGAGGTGGTGCACATGAAAATGAATCAATTGCCTTCTGCATCATCTCCCGCAGCCACATCAGAAAACACCTCTCCCATCTCAGTCAAGCAAATAATGCCTAATAATAATAATAATTCTCACCATCATTATCATCCTCATCAGACCACCAAATCCTTTTTTACAATGGACATGGTGGTAGATCAGGCCAATTCTTTGTGGTCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

180

Amino Acids

19.91

Weight (kDa)

8.24

Isoelectric Point (pI)

68.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 14 - 111 1.5e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 306
Acc16I TGCGCA 2 cut(s) 46, 78
AciI CCGC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 227, 260
AfiI CCNNNNNNNGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 58, 110, 335
AluI AGCT 3 cut(s) 58, 110, 335
Alw21I GWGCWC 3 cut(s) 141, 195, 348
Alw26I GTCTC 2 cut(s) 42, 243
Alw44I GTGCAC 2 cut(s) 137, 344
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 2 cut(s) 321, 519
ApaLI GTGCAC 2 cut(s) 137, 344
ApeKI GCWGC 2 cut(s) 47, 386
AspLEI GCGC 3 cut(s) 47, 79, 201
AsuHPI GGTGA 1 cut(s) 446
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 141, 348
BalI TGGCCA 1 cut(s) 323
Bbv12I GWGCWC 3 cut(s) 141, 195, 348
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 59, 398
BccI CCATC 3 cut(s) 214, 419, 465
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 2 cut(s) 42, 243
BfaI CTAG 2 cut(s) 156, 541
BfmI CTRYAG 2 cut(s) 176, 287
BisI GCNGC 2 cut(s) 48, 387
BlsI GCNGC 2 cut(s) 49, 388
BmeT110I CYCGRG 1 cut(s) 240
BmsI GCATC 3 cut(s) 162, 196, 383
BmtI GCTAGC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 2 cut(s) 166, 324
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 2 cut(s) 166, 324
BseMII CTCAG 3 cut(s) 53, 327, 429
BseNI ACTGG 1 cut(s) 324
BseSI GKGCMC 2 cut(s) 141, 348
BseXI GCAGC 2 cut(s) 59, 398
BshFI GGCC 2 cut(s) 323, 521
BsiHKAI GWGCWC 3 cut(s) 141, 195, 348
BsiHKCI CYCGRG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 42, 243
BsnI GGCC 2 cut(s) 323, 521
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 3 cut(s) 141, 195, 348
Bsp143I GATC 3 cut(s) 9, 297, 514
BspACI CCGC 1 cut(s) 384
BspANI GGCC 2 cut(s) 323, 521
BspCNI CTCAG 3 cut(s) 54, 328, 428
BspOI GCTAGC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 166, 324
BsrI ACTGG 1 cut(s) 324
BssMI GATC 3 cut(s) 9, 297, 514
BssNI GRCGYC 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 430
BstC8I GCNNGC 3 cut(s) 52, 56, 157
BstDEI CTNAG 3 cut(s) 62, 336, 415
BstF5I GGATG 1 cut(s) 466
BstHHI GCGC 3 cut(s) 47, 79, 201
BstKTI GATC 3 cut(s) 12, 300, 517
BstMAI GTCTC 2 cut(s) 42, 243
BstMBI GATC 3 cut(s) 9, 297, 514
BstMWI GCNNNNNNNGC 2 cut(s) 51, 430
BstNSI RCATGY 1 cut(s) 54
BstSFI CTRYAG 2 cut(s) 176, 287
BstSLI GKGCMC 2 cut(s) 141, 348
BstV1I GCAGC 2 cut(s) 59, 398
BsuRI GGCC 2 cut(s) 323, 521
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 2 cut(s) 208, 216
BtsIMutI CAGTG 3 cut(s) 19, 208, 216
Cac8I GCNNGC 3 cut(s) 52, 56, 157
CfoI GCGC 3 cut(s) 47, 79, 201
Csp6I GTAC 2 cut(s) 226, 259
CviAII CATG 5 cut(s) 42, 51, 349, 505, 537
CviJI RGCY 8 cut(s) 58, 110, 118, 264, 323, 335, 389, 521
CviKI_1 RGCY 8 cut(s) 58, 110, 118, 264, 323, 335, 389, 521
CviQI GTAC 2 cut(s) 226, 259
DdeI CTNAG 3 cut(s) 62, 336, 415
DpnI GATC 3 cut(s) 11, 299, 516
DpnII GATC 3 cut(s) 9, 297, 514
EaeI YGGCCR 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 240
FaeI CATG 5 cut(s) 45, 54, 352, 508, 540
FaiI YATR 5 cut(s) 43, 52, 350, 506, 538
FatI CATG 5 cut(s) 41, 50, 348, 504, 536
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 48, 387
FokI GGATG 1 cut(s) 453
Fsp4HI GCNGC 2 cut(s) 48, 387
FspBI CTAG 2 cut(s) 156, 541
FspI TGCGCA 2 cut(s) 46, 78
GlaI GCGC 3 cut(s) 46, 78, 200
GluI GCNGC 2 cut(s) 48, 387
HaeIII GGCC 2 cut(s) 323, 521
HhaI GCGC 3 cut(s) 47, 79, 201
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 5 cut(s) 45, 54, 352, 508, 540
Hin6I GCGC 3 cut(s) 45, 77, 199
HinP1I GCGC 3 cut(s) 45, 77, 199
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 358
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 5 cut(s) 139, 166, 226, 259, 346
Hpy188I TCNGA 3 cut(s) 63, 397, 477
Hpy8I GTNNAC 5 cut(s) 139, 166, 226, 259, 346
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 60, 378
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 8 cut(s) 54, 131, 139, 209, 275, 329, 346, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 430
HpyF3I CTNAG 3 cut(s) 62, 336, 415
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 5 cut(s) 45, 54, 352, 508, 540
HspAI GCGC 3 cut(s) 45, 77, 199
Kzo9I GATC 3 cut(s) 9, 297, 514
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 65, 120, 164, 201, 209, 267, 305, 503
Lsp1109I GCAGC 2 cut(s) 59, 398
LweI GCATC 3 cut(s) 162, 196, 383
MaeI CTAG 2 cut(s) 156, 541
MaeII ACGT 1 cut(s) 303
MalI GATC 3 cut(s) 11, 299, 516
MboI GATC 3 cut(s) 9, 297, 514
MfeI CAATTG 1 cut(s) 362
MhlI GDGCHC 3 cut(s) 141, 195, 348
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 4 cut(s) 182, 362, 448, 523
MluNI TGGCCA 1 cut(s) 323
MnlI CCTC 7 cut(s) 63, 129, 223, 317, 331, 415, 480
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 110
MunI CAATTG 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 51, 430
NdeII GATC 3 cut(s) 9, 297, 514
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 5 cut(s) 45, 54, 352, 508, 540
NsbI TGCGCA 2 cut(s) 46, 78
NspI RCATGY 1 cut(s) 54
PaeI GCATGC 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 240
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 2 cut(s) 49, 388
PspXI VCTCGAGB 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 227, 260
RsaNI GTAC 2 cut(s) 226, 259
RseI CAYNNNNRTG 1 cut(s) 353
SatI GCNGC 2 cut(s) 48, 387
Sau3AI GATC 3 cut(s) 9, 297, 514
SduI GDGCHC 3 cut(s) 141, 195, 348
SetI ASST 9 cut(s) 31, 60, 74, 112, 147, 306, 337, 342, 407
SfaNI GCATC 3 cut(s) 162, 196, 383
SfcI CTRYAG 2 cut(s) 176, 287
Sfr274I CTCGAG 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SphI GCATGC 1 cut(s) 54
Sse9I AATT 4 cut(s) 182, 362, 448, 523
SsiI CCGC 1 cut(s) 384
SspMI CTAG 2 cut(s) 156, 541
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 218, 241, 300
TasI AATT 4 cut(s) 182, 362, 448, 523
TfiI GAWTC 1 cut(s) 358
TscAI CASTG 3 cut(s) 19, 208, 216
TseI GCWGC 2 cut(s) 47, 386
TspDTI ATGAA 3 cut(s) 17, 365, 371
TspRI CASTG 3 cut(s) 19, 208, 216
VneI GTGCAC 2 cut(s) 137, 344
XceI RCATGY 1 cut(s) 54
XhoI CTCGAG 1 cut(s) 240
XspI CTAG 2 cut(s) 156, 541
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.