FvH4_3g11810

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004498
Physical Location & Seq
Reverse (-)
6973457 .. 6975453
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11810.t1

Sequence Viewer

Length: 531 bp
ATGAAGGAGAATGGTTGCAGCAGGAAACAGGGTGCAGCTTCACCATGCGCAGCTTGCAAGCTACTGAGGAGGAGGTGTGCGCAGGACTGTGTTTTTGCTCCTTACTTTCCCGCAGATGAGCCCCAGAAGTTCGCTAATGTTCACAAAGTCTTTGGTGCCAGTAATGTCAACAAAATGCTGCAGGAGCTACCGGAGCACCAGAGAGGTGATGCGGTGAGCAGCATGGTGTATGAAGCAAATGCAAGAGTCCGGGACCCGGTTTACGGCTGCGTCGGGGCGATTTCATCTCTGCAGCAACAGATTGATGTGCTTCAGACCCAACTGGCTCTGGCTCAGGCTGAGGTGGTGCACCTTAGGGTTAGGCAGACTGCATCCATCTCCAACCATGGGCTGAGCCCCTCGAGCCCAAGTAATAGCGGCTCGCCGTCGTCGTCGAGGTTTGCCGGTTCACAGGCCCGGCCCATTTTTGACATGGATATGATGATGGACCATAGCAGCTTGGGATTGGGAGAGTCCATGTGGTCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

177

Amino Acids

19.06

Weight (kDa)

8.2

Isoelectric Point (pI)

64.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 15 - 112 5.7e-44 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 49, 81
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 3 cut(s) 111, 212, 417
AcuI CTGAAG 1 cut(s) 296
AfiI CCNNNNNNNGG 3 cut(s) 256, 263, 387
AluBI AGCT 5 cut(s) 38, 53, 61, 187, 498
AluI AGCT 5 cut(s) 38, 53, 61, 187, 498
Alw21I GWGCWC 2 cut(s) 198, 351
Alw44I GTGCAC 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 400
AoxI GGCC 2 cut(s) 453, 458
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 8 cut(s) 18, 35, 50, 178, 219, 267, 292, 495
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 2 cut(s) 50, 82
AspS9I GGNCC 4 cut(s) 253, 454, 459, 487
AsuC2I CCSGG 3 cut(s) 251, 257, 457
AsuHPI GGTGA 3 cut(s) 33, 218, 226
AvaI CYCGRG 1 cut(s) 400
AvaII GGWCC 2 cut(s) 253, 487
AxyI CCTNAGG 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 3 cut(s) 123, 398, 407
Bbv12I GWGCWC 2 cut(s) 198, 351
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 8 cut(s) 30, 47, 62, 165, 231, 254, 304, 507
BccI CCATC 2 cut(s) 383, 478
BceAI ACGGC 2 cut(s) 280, 409
BcnI CCSGG 3 cut(s) 251, 257, 457
BfmI CTRYAG 2 cut(s) 179, 290
BisI GCNGC 9 cut(s) 19, 36, 51, 179, 220, 268, 293, 418, 496
BlpI GCTNAGC 1 cut(s) 392
BlsI GCNGC 9 cut(s) 20, 37, 52, 180, 221, 269, 294, 419, 497
Bme1390I CCNGG 3 cut(s) 251, 257, 457
Bme18I GGWCC 2 cut(s) 253, 487
BmeT110I CYCGRG 1 cut(s) 400
BmgT120I GGNCC 4 cut(s) 253, 454, 459, 487
BmiI GGNNCC 3 cut(s) 157, 254, 255
BmrFI CCNGG 3 cut(s) 251, 257, 457
BmsI GCATC 2 cut(s) 199, 380
Bpu10I CCTNAGC 2 cut(s) 333, 339
Bpu1102I GCTNAGC 1 cut(s) 392
BpuMI CCSGG 3 cut(s) 251, 257, 457
BsaJI CCNNGG 1 cut(s) 385
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 263, 387
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 159, 327
Bse21I CCTNAGG 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 371
BseLI CCNNNNNNNGG 3 cut(s) 256, 263, 387
BseMII CTCAG 4 cut(s) 56, 330, 347, 383
BseNI ACTGG 2 cut(s) 159, 327
BseRI GAGGAG 2 cut(s) 82, 85
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 8 cut(s) 30, 47, 62, 165, 231, 254, 304, 507
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 2 cut(s) 455, 460
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 198, 351
BsiHKCI CYCGRG 1 cut(s) 400
BsiSI CCGG 5 cut(s) 191, 250, 257, 444, 457
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 3 cut(s) 256, 263, 387
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 2 cut(s) 455, 460
BsoBI CYCGRG 1 cut(s) 400
Bsp1286I GDGCHC 5 cut(s) 123, 198, 351, 398, 407
Bsp1720I GCTNAGC 1 cut(s) 392
Bsp19I CCATGG 1 cut(s) 385
BspACI CCGC 3 cut(s) 111, 212, 417
BspANI GGCC 2 cut(s) 455, 460
BspCNI CTCAG 4 cut(s) 57, 331, 346, 384
BspLI GGNNCC 3 cut(s) 157, 254, 255
BspMAI CTGCAG 2 cut(s) 183, 294
BspT107I GGYRCC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 2 cut(s) 159, 327
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 385
BssT1I CCWWGG 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 55, 59, 422
BstDEI CTNAG 5 cut(s) 65, 333, 339, 353, 392
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 371
BstHHI GCGC 2 cut(s) 50, 82
BstMWI GCNNNNNNNGC 4 cut(s) 54, 184, 193, 402
BstSCI CCNGG 3 cut(s) 249, 255, 455
BstSFI CTRYAG 2 cut(s) 179, 290
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 8 cut(s) 30, 47, 62, 165, 231, 254, 304, 507
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 2 cut(s) 455, 460
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 1 cut(s) 371
Cac8I GCNNGC 3 cut(s) 55, 59, 422
CfoI GCGC 2 cut(s) 50, 82
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 4 cut(s) 253, 454, 459, 487
CseI GACGC 1 cut(s) 259
CviAII CATG 6 cut(s) 45, 223, 386, 472, 517, 525
DdeI CTNAG 5 cut(s) 65, 333, 339, 353, 392
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 3 cut(s) 123, 398, 407
Eco47I GGWCC 2 cut(s) 253, 487
Eco57I CTGAAG 1 cut(s) 296
Eco81I CCTNAGG 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 3 cut(s) 123, 398, 407
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 6 cut(s) 48, 226, 389, 475, 520, 528
FaiI YATR 9 cut(s) 46, 224, 231, 387, 473, 479, 492, 518, 526
FaqI GGGAC 1 cut(s) 266
FatI CATG 6 cut(s) 44, 222, 385, 471, 516, 524
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 9 cut(s) 19, 36, 51, 179, 220, 268, 293, 418, 496
FokI GGATG 1 cut(s) 358
FriOI GRGCYC 3 cut(s) 123, 398, 407
Fsp4HI GCNGC 9 cut(s) 19, 36, 51, 179, 220, 268, 293, 418, 496
FspI TGCGCA 2 cut(s) 49, 81
GlaI GCGC 2 cut(s) 49, 81
GluI GCNGC 9 cut(s) 19, 36, 51, 179, 220, 268, 293, 418, 496
HaeIII GGCC 2 cut(s) 455, 460
HapII CCGG 5 cut(s) 191, 250, 257, 444, 457
HgaI GACGC 1 cut(s) 259
HhaI GCGC 2 cut(s) 50, 82
Hin1II CATG 6 cut(s) 48, 226, 389, 475, 520, 528
Hin6I GCGC 2 cut(s) 48, 80
HinP1I GCGC 2 cut(s) 48, 80
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 2 cut(s) 246, 512
HpaII CCGG 5 cut(s) 191, 250, 257, 444, 457
HphI GGTGA 3 cut(s) 33, 218, 226
Hpy166II GTNNAC 5 cut(s) 142, 169, 262, 349, 449
Hpy188I TCNGA 1 cut(s) 315
Hpy8I GTNNAC 5 cut(s) 142, 169, 262, 349, 449
Hpy99I CGWCG 4 cut(s) 275, 430, 433, 436
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 8 cut(s) 18, 35, 57, 181, 242, 292, 349, 371
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 184, 193, 402
HpyF3I CTNAG 5 cut(s) 65, 333, 339, 353, 392
Hsp92II CATG 6 cut(s) 48, 226, 389, 475, 520, 528
HspAI GCGC 2 cut(s) 48, 80
KflI GGGWCCC 1 cut(s) 253
LmnI GCTCC 3 cut(s) 103, 184, 193
Lsp1109I GCAGC 8 cut(s) 30, 47, 62, 165, 231, 254, 304, 507
LweI GCATC 2 cut(s) 199, 380
MhlI GDGCHC 5 cut(s) 123, 198, 351, 398, 407
MlyI GAGTC 2 cut(s) 255, 521
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 7 cut(s) 60, 63, 66, 197, 334, 409, 429
MslI CAYNNNNRTG 1 cut(s) 476
MspI CCGG 5 cut(s) 191, 250, 257, 444, 457
MspR9I CCNGG 3 cut(s) 251, 257, 457
MwoI GCNNNNNNNGC 4 cut(s) 54, 184, 193, 402
NciI CCSGG 3 cut(s) 251, 257, 457
NcoI CCATGG 1 cut(s) 385
NlaIII CATG 6 cut(s) 48, 226, 389, 475, 520, 528
NlaIV GGNNCC 3 cut(s) 157, 254, 255
NsbI TGCGCA 2 cut(s) 49, 81
PaeR7I CTCGAG 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 9 cut(s) 20, 37, 52, 180, 221, 269, 294, 419, 497
PleI GAGTC 2 cut(s) 254, 520
PpsI GAGTC 2 cut(s) 254, 520
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
PspN4I GGNNCC 3 cut(s) 157, 254, 255
PspPI GGNCC 4 cut(s) 253, 454, 459, 487
PspPPI RGGWCCY 1 cut(s) 253
PspXI VCTCGAGB 1 cut(s) 400
PstI CTGCAG 2 cut(s) 183, 294
RseI CAYNNNNRTG 1 cut(s) 476
SatI GCNGC 9 cut(s) 19, 36, 51, 179, 220, 268, 293, 418, 496
Sau96I GGNCC 4 cut(s) 253, 454, 459, 487
SchI GAGTC 2 cut(s) 255, 521
ScrFI CCNGG 3 cut(s) 251, 257, 457
SduI GDGCHC 5 cut(s) 123, 198, 351, 398, 407
SfaNI GCATC 2 cut(s) 199, 380
SfcI CTRYAG 2 cut(s) 179, 290
Sfr274I CTCGAG 1 cut(s) 400
SinI GGWCC 2 cut(s) 253, 487
SlaI CTCGAG 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 400
SmoI CTYRAG 1 cut(s) 400
SsiI CCGC 3 cut(s) 111, 212, 417
StyD4I CCNGG 3 cut(s) 249, 255, 455
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 2 cut(s) 401, 434
TauI GCSGC 1 cut(s) 420
TseI GCWGC 8 cut(s) 18, 35, 50, 178, 219, 267, 292, 495
TspDTI ATGAA 3 cut(s) 17, 246, 273
VneI GTGCAC 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 253, 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.