Rorug05G0048500

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004498
Physical Location & Seq
Forward (+)
4235220 .. 4240504
5285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0048500.1

Sequence Viewer

Length: 1269 bp
ATGTCGAGAATTTCCTTCCTTGGCCGGATGGTGGCCGTGGTGCCTGTGCGAGCTTACTGTACTGGAAGGGAGCTGAATCAGCTGATGGTTATTGAACCTCCTCAATCCCGCAAATGGTGGAGATTTCCTTTTCGAGGGTTATGGATGGGGACGAGTGCTGTTGGAGTTGGGACCTTGTGTATCTCTTACTATTCAGTGTCCATTCAGAGCAAGTCTCACCGCCTCGATCATCATCGATCTGTAAGGGAGGAAGCTAGGGCTGAGAAGGAGGAAGCTAGGGCTGAGAAGGCCGAGGCTAGGGCTGAGAAGGCCGAGGCTAGGGCTGAGAGTGCCGAGGCAAGAGCTCAGAGGGATGAGGCAAGGGCGGTGGCAAGAGCTCAGAGGGATGAGGCAAGAGCTCAGAGGGATGAGGCAAGGGCGGTGGCAAGAGCTCAGAGGGATGAGGCAAGGGCCAATCGGGCGGCGGCGGCTCGGCAAGGAAGGATGAATCATGGAAGCGTTGCTCCTGCCAAGAACTCCAGACTATCACCTCTGCCTCCAGAACGTGCTGGTTTCAATTATGGTATTGGTGAAACCGTTGATATACCGATTGATGGAAGTGGGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGAATTGAGAAAGTGTGAAGAGATTGTAAAACGGAAAGAGGATGCTGCAGCACGAGCTGGAATTGTTCTGGAGGAAAAAAATTGGCCTCCTTTCTTTCCACTTATCCATCATGATATTGCAAATGAAATACCAATTCATTTACAAAGGGTGATGTATGTTGCATTTACAACACGGTTACGAATTGTTGCTTGCCTATTCTGGAATATAATAGCTGTGACTACTGCCTGGATTACGGGTGAAGGGGTGAAAATTTGGTTCCTTGCAGTTATATATTTCATTGCTGGGGCCCCTGGATCTTATGTGTTGTGGTACCGTCCTCTTTGCCGTGTGTTCAGGTCTGAGAGTGCTTTGAAGTACCGATGGTTTTTCCTGTTTCTGATCCACATTGGCTTCTGCATCTTTGCTGCGGTTGCTCCCTCTATAATGTTCAAAGGAAAATCTCTCATTGGCATTCTGGCTGCAATTGATATTCGAAGTGATCATGCTTTGGTTAGGTTGTTCTACTGTATTGGATTCGGCATGTTCTGTCTAGAATCAGTGCTTAGCATCTGGATTATTCAGCAAGTATACATGTACGTCCCGGGAAGTGGTAAAGCTGCTAAAATGAAGCGTCAGGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

422

Amino Acids

47.73

Weight (kDa)

9.82

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 240 - 408 1.6e-47 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 954
AccB1I GGYRCC 2 cut(s) 40, 954
AccI GTMKAC 1 cut(s) 1212
AciI CCGC 8 cut(s) 109, 220, 365, 419, 461, 464, 467, 1052
AclWI GGATC 2 cut(s) 946, 1018
AcoI YGGCCR 2 cut(s) 22, 33
AcsI RAATTY 2 cut(s) 9, 894
AfaI GTAC 4 cut(s) 61, 956, 1001, 1220
AfiI CCNNNNNNNGG 7 cut(s) 31, 114, 134, 297, 318, 593, 1232
AflIII ACRYGT 1 cut(s) 1215
AgsI TTSAA 5 cut(s) 95, 556, 610, 997, 1075
AjnI CCWGG 2 cut(s) 869, 934
Alw21I GWGCWC 4 cut(s) 346, 379, 400, 433
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 2 cut(s) 946, 1018
Ama87I CYCGRG 1 cut(s) 1225
AoxI GGCC 7 cut(s) 22, 33, 288, 309, 450, 728, 930
ApaI GGGCCC 1 cut(s) 934
ApeKI GCWGC 5 cut(s) 689, 692, 1049, 1103, 1241
ApoI RAATTY 2 cut(s) 9, 894
Asp718I GGTACC 1 cut(s) 954
AspS9I GGNCC 4 cut(s) 171, 450, 930, 931
AsuC2I CCSGG 2 cut(s) 1226, 1227
AsuHPI GGTGA 6 cut(s) 209, 519, 581, 805, 893, 901
AsuII TTCGAA 1 cut(s) 1117
AvaI CYCGRG 1 cut(s) 1225
AvaII GGWCC 1 cut(s) 171
BaeGI GKGCMC 1 cut(s) 934
BanI GGYRCC 2 cut(s) 40, 954
BanII GRGCYC 5 cut(s) 346, 379, 400, 433, 934
BauI CACGAG 1 cut(s) 696
Bbv12I GWGCWC 4 cut(s) 346, 379, 400, 433
BbvI GCAGC 5 cut(s) 676, 704, 1036, 1090, 1228
BccI CCATC 6 cut(s) 22, 79, 139, 587, 759, 999
BceAI ACGGC 2 cut(s) 20, 954
BciT130I CCWGG 2 cut(s) 871, 936
BclI TGATCA 1 cut(s) 1123
BcnI CCSGG 2 cut(s) 1226, 1227
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 5 cut(s) 255, 276, 297, 318, 1175
BfmI CTRYAG 1 cut(s) 690
BglI GCCNNNNNGGC 1 cut(s) 458
BisI GCNGC 8 cut(s) 462, 465, 468, 690, 693, 1050, 1104, 1242
BlpI GCTNAGC 1 cut(s) 1187
BlsI GCNGC 8 cut(s) 463, 466, 469, 691, 694, 1051, 1105, 1243
Bme1390I CCNGG 4 cut(s) 871, 936, 1226, 1227
Bme18I GGWCC 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 1225
BmgT120I GGNCC 4 cut(s) 171, 450, 930, 931
BmiI GGNNCC 7 cut(s) 42, 172, 902, 931, 932, 933, 956
BmrFI CCNGG 4 cut(s) 871, 936, 1226, 1227
BmsI GCATC 3 cut(s) 676, 1050, 1200
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpmI CTGGAG 3 cut(s) 502, 522, 734
Bpu1102I GCTNAGC 1 cut(s) 1187
Bpu14I TTCGAA 1 cut(s) 1117
BpuMI CCSGG 2 cut(s) 1226, 1227
Bsa29I ATCGAT 1 cut(s) 235
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 7 cut(s) 19, 36, 291, 312, 333, 934, 1225
Bsc4I CCNNNNNNNGG 7 cut(s) 31, 114, 134, 297, 318, 593, 1232
Bse1I ACTGG 1 cut(s) 67
Bse3DI GCAATG 1 cut(s) 921
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 2 cut(s) 871, 936
BseCI ATCGAT 1 cut(s) 235
BseDI CCNNGG 7 cut(s) 19, 36, 291, 312, 333, 934, 1225
BseGI GGATG 8 cut(s) 33, 150, 358, 391, 412, 445, 489, 691
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 7 cut(s) 31, 114, 134, 297, 318, 593, 1232
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 9 cut(s) 252, 273, 294, 315, 359, 392, 413, 446, 975
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 934
BseXI GCAGC 5 cut(s) 676, 704, 1036, 1090, 1228
BseYI CCCAGC 1 cut(s) 926
BshFI GGCC 7 cut(s) 24, 35, 290, 311, 452, 730, 932
BshNI GGYRCC 2 cut(s) 40, 954
BshVI ATCGAT 1 cut(s) 235
BsiHKAI GWGCWC 4 cut(s) 346, 379, 400, 433
BsiHKCI CYCGRG 1 cut(s) 1225
BsiSI CCGG 2 cut(s) 25, 1226
BslFI GGGAC 3 cut(s) 163, 184, 1208
BslI CCNNNNNNNGG 7 cut(s) 31, 114, 134, 297, 318, 593, 1232
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 3 cut(s) 163, 184, 1208
BsmI GAATGC 1 cut(s) 1095
BsnI GGCC 7 cut(s) 24, 35, 290, 311, 452, 730, 932
BsoBI CYCGRG 1 cut(s) 1225
Bsp119I TTCGAA 1 cut(s) 1117
Bsp120I GGGCCC 1 cut(s) 930
Bsp1286I GDGCHC 5 cut(s) 346, 379, 400, 433, 934
Bsp143I GATC 5 cut(s) 226, 236, 938, 1023, 1123
Bsp1720I GCTNAGC 1 cut(s) 1187
BspACI CCGC 8 cut(s) 109, 220, 365, 419, 461, 464, 467, 1052
BspANI GGCC 7 cut(s) 24, 35, 290, 311, 452, 730, 932
BspCNI CTCAG 9 cut(s) 253, 274, 295, 316, 358, 391, 412, 445, 976
BspDI ATCGAT 1 cut(s) 235
BspHI TCATGA 1 cut(s) 754
BspLI GGNNCC 7 cut(s) 42, 172, 902, 931, 932, 933, 956
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 2 cut(s) 946, 1018
BspT104I TTCGAA 1 cut(s) 1117
BspT107I GGYRCC 2 cut(s) 40, 954
BsrDI GCAATG 1 cut(s) 921
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 7 cut(s) 19, 36, 291, 312, 333, 934, 1225
BssMI GATC 5 cut(s) 226, 236, 938, 1023, 1123
BssNAI GTATAC 1 cut(s) 1213
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 1213
Bst2BI CACGAG 1 cut(s) 696
Bst2UI CCWGG 2 cut(s) 871, 936
Bst4CI ACNGT 5 cut(s) 59, 577, 819, 959, 1151
Bst6I CTCTTC 1 cut(s) 657
BstBI TTCGAA 1 cut(s) 1117
BstC8I GCNNGC 2 cut(s) 51, 835
BstDSI CCRYGG 1 cut(s) 36
BstENI CCTNNNNNAGG 1 cut(s) 132
BstF5I GGATG 8 cut(s) 33, 150, 358, 391, 412, 445, 489, 691
BstKTI GATC 5 cut(s) 229, 239, 941, 1026, 1126
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 5 cut(s) 226, 236, 938, 1023, 1123
BstMWI GCNNNNNNNGC 9 cut(s) 79, 287, 308, 329, 458, 467, 641, 698, 1055
BstNI CCWGG 2 cut(s) 871, 936
BstNSI RCATGY 2 cut(s) 1168, 1219
BstSCI CCNGG 4 cut(s) 869, 934, 1224, 1225
BstSFI CTRYAG 1 cut(s) 690
BstSLI GKGCMC 1 cut(s) 934
BstV1I GCAGC 5 cut(s) 676, 704, 1036, 1090, 1228
BstX2I RGATCY 1 cut(s) 938
BstYI RGATCY 1 cut(s) 938
BstZ17I GTATAC 1 cut(s) 1213
Bsu15I ATCGAT 1 cut(s) 235
BsuRI GGCC 7 cut(s) 24, 35, 290, 311, 452, 730, 932
BsuTUI ATCGAT 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 8 cut(s) 33, 150, 358, 391, 412, 445, 489, 691
BtsIMutI CAGTG 2 cut(s) 201, 1188
Cac8I GCNNGC 2 cut(s) 51, 835
CciI TCATGA 1 cut(s) 754
Cfr13I GGNCC 4 cut(s) 171, 450, 930, 931
Cfr9I CCCGGG 1 cut(s) 1225
ClaI ATCGAT 1 cut(s) 235
CseI GACGC 1 cut(s) 1244
Csp6I GTAC 4 cut(s) 60, 955, 1000, 1219
CspCI CAANNNNNGTGG 4 cut(s) 348, 383, 402, 437
CviAII CATG 6 cut(s) 491, 755, 1127, 1165, 1216, 1266
CviQI GTAC 4 cut(s) 60, 955, 1000, 1219
DpnI GATC 5 cut(s) 228, 238, 940, 1025, 1125
DpnII GATC 5 cut(s) 226, 236, 938, 1023, 1123
EaeI YGGCCR 2 cut(s) 22, 33
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
Ecl136II GAGCTC 4 cut(s) 344, 377, 398, 431
Eco130I CCWWGG 1 cut(s) 19
Eco24I GRGCYC 5 cut(s) 346, 379, 400, 433, 934
Eco47I GGWCC 1 cut(s) 171
Eco53kI GAGCTC 4 cut(s) 344, 377, 398, 431
Eco88I CYCGRG 1 cut(s) 1225
EcoICRI GAGCTC 4 cut(s) 344, 377, 398, 431
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoO109I RGGNCCY 3 cut(s) 171, 930, 931
EcoRII CCWGG 2 cut(s) 869, 934
EcoT14I CCWWGG 1 cut(s) 19
EcoT38I GRGCYC 5 cut(s) 346, 379, 400, 433, 934
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 6 cut(s) 494, 758, 1130, 1168, 1219, 1269
FaqI GGGAC 3 cut(s) 163, 184, 1208
FatI CATG 6 cut(s) 490, 754, 1126, 1164, 1215, 1265
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 1123
FblI GTMKAC 1 cut(s) 1212
Fnu4HI GCNGC 8 cut(s) 462, 465, 468, 690, 693, 1050, 1104, 1242
FokI GGATG 8 cut(s) 40, 157, 365, 398, 419, 452, 496, 698
FriOI GRGCYC 5 cut(s) 346, 379, 400, 433, 934
Fsp4HI GCNGC 8 cut(s) 462, 465, 468, 690, 693, 1050, 1104, 1242
FspBI CTAG 5 cut(s) 255, 276, 297, 318, 1175
GluI GCNGC 8 cut(s) 462, 465, 468, 690, 693, 1050, 1104, 1242
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 3 cut(s) 502, 522, 734
HaeIII GGCC 7 cut(s) 24, 35, 290, 311, 452, 730, 932
HapII CCGG 2 cut(s) 25, 1226
HgaI GACGC 1 cut(s) 1244
Hin1II CATG 6 cut(s) 494, 758, 1130, 1168, 1219, 1269
HinfI GANTC 4 cut(s) 76, 487, 1158, 1178
HpaII CCGG 2 cut(s) 25, 1226
HphI GGTGA 6 cut(s) 209, 519, 581, 805, 893, 901
Hpy166II GTNNAC 1 cut(s) 1213
Hpy188I TCNGA 7 cut(s) 207, 348, 381, 402, 435, 985, 1023
Hpy188III TCNNGA 8 cut(s) 6, 519, 539, 713, 755, 844, 1175, 1195
Hpy8I GTNNAC 1 cut(s) 1213
HpyAV CCTTC 7 cut(s) 25, 60, 259, 280, 301, 474, 878
HpyCH4III ACNGT 5 cut(s) 59, 577, 819, 959, 1151
HpyCH4IV ACGT 2 cut(s) 544, 1221
HpyCH4V TGCA 6 cut(s) 692, 764, 806, 908, 1041, 1106
HpyF10VI GCNNNNNNNGC 9 cut(s) 79, 287, 308, 329, 458, 467, 641, 698, 1055
HpySE526I ACGT 2 cut(s) 544, 1221
Hsp92II CATG 6 cut(s) 494, 758, 1130, 1168, 1219, 1269
KpnI GGTACC 1 cut(s) 958
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 5 cut(s) 226, 236, 938, 1023, 1123
LmnI GCTCC 4 cut(s) 70, 508, 1063, 1262
Lsp1109I GCAGC 5 cut(s) 676, 704, 1036, 1090, 1228
LweI GCATC 3 cut(s) 676, 1050, 1200
MaeI CTAG 5 cut(s) 255, 276, 297, 318, 1175
MaeII ACGT 2 cut(s) 544, 1221
MaeIII GTNAC 2 cut(s) 819, 859
MalI GATC 5 cut(s) 228, 238, 940, 1025, 1125
MboI GATC 5 cut(s) 226, 236, 938, 1023, 1123
MboII GAAGA 1 cut(s) 674
MfeI CAATTG 1 cut(s) 1107
MflI RGATCY 1 cut(s) 938
MhlI GDGCHC 5 cut(s) 346, 379, 400, 433, 934
MluCI AATT 9 cut(s) 9, 556, 647, 705, 724, 777, 825, 894, 1107
MmeI TCCRAC 1 cut(s) 142
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 2 cut(s) 25, 1226
MspR9I CCNGG 4 cut(s) 871, 936, 1226, 1227
MunI CAATTG 1 cut(s) 1107
Mva1269I GAATGC 1 cut(s) 1095
MvaI CCWGG 2 cut(s) 871, 936
MwoI GCNNNNNNNGC 9 cut(s) 79, 287, 308, 329, 458, 467, 641, 698, 1055
NciI CCSGG 2 cut(s) 1226, 1227
NdeII GATC 5 cut(s) 226, 236, 938, 1023, 1123
NlaIII CATG 6 cut(s) 494, 758, 1130, 1168, 1219, 1269
NlaIV GGNNCC 7 cut(s) 42, 172, 902, 931, 932, 933, 956
NmeAIII GCCGAG 4 cut(s) 316, 337, 358, 451
NmuCI GTSAC 1 cut(s) 859
NspI RCATGY 2 cut(s) 1168, 1219
NspV TTCGAA 1 cut(s) 1117
PagI TCATGA 1 cut(s) 754
PciI ACATGT 1 cut(s) 1215
PctI GAATGC 1 cut(s) 1095
PfeI GAWTC 4 cut(s) 76, 487, 1158, 1178
PkrI GCNGC 8 cut(s) 463, 466, 469, 691, 694, 1051, 1105, 1243
PpuMI RGGWCCY 1 cut(s) 171
PscI ACATGT 1 cut(s) 1215
Psp124BI GAGCTC 4 cut(s) 346, 379, 400, 433
Psp5II RGGWCCY 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 869, 934
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 869, 934
PspN4I GGNNCC 7 cut(s) 42, 172, 902, 931, 932, 933, 956
PspOMI GGGCCC 1 cut(s) 930
PspPI GGNCC 4 cut(s) 171, 450, 930, 931
PspPPI RGGWCCY 1 cut(s) 171
PstI CTGCAG 1 cut(s) 694
PsuI RGATCY 1 cut(s) 938
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 4 cut(s) 61, 956, 1001, 1220
RsaNI GTAC 4 cut(s) 60, 955, 1000, 1219
SacI GAGCTC 4 cut(s) 346, 379, 400, 433
SatI GCNGC 8 cut(s) 462, 465, 468, 690, 693, 1050, 1104, 1242
Sau3AI GATC 5 cut(s) 226, 236, 938, 1023, 1123
Sau96I GGNCC 4 cut(s) 171, 450, 930, 931
ScrFI CCNGG 4 cut(s) 871, 936, 1226, 1227
SduI GDGCHC 5 cut(s) 346, 379, 400, 433, 934
SfaNI GCATC 3 cut(s) 676, 1050, 1200
SfcI CTRYAG 1 cut(s) 690
SfuI TTCGAA 1 cut(s) 1117
SinI GGWCC 1 cut(s) 171
SmaI CCCGGG 1 cut(s) 1227
Sse9I AATT 9 cut(s) 9, 556, 647, 705, 724, 777, 825, 894, 1107
SsiI CCGC 8 cut(s) 109, 220, 365, 419, 461, 464, 467, 1052
SspMI CTAG 5 cut(s) 255, 276, 297, 318, 1175
SstI GAGCTC 4 cut(s) 346, 379, 400, 433
StyD4I CCNGG 4 cut(s) 869, 934, 1224, 1225
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 5 cut(s) 59, 577, 819, 959, 1151
TaiI ACGT 2 cut(s) 547, 1224
TaqI TCGA 5 cut(s) 5, 133, 225, 235, 1117
TasI AATT 9 cut(s) 9, 556, 647, 705, 724, 777, 825, 894, 1107
TatI WGTACW 1 cut(s) 59
TauI GCSGC 3 cut(s) 464, 467, 470
TfiI GAWTC 4 cut(s) 76, 487, 1158, 1178
TscAI CASTG 2 cut(s) 201, 1188
TseFI GTSAC 1 cut(s) 859
TseI GCWGC 5 cut(s) 689, 692, 1049, 1103, 1241
Tsp45I GTSAC 1 cut(s) 859
TspDTI ATGAA 5 cut(s) 500, 770, 783, 910, 1265
TspGWI ACGGA 1 cut(s) 691
TspMI CCCGGG 1 cut(s) 1225
TspRI CASTG 2 cut(s) 201, 1188
VpaK11BI GGWCC 1 cut(s) 171
XagI CCTNNNNNAGG 1 cut(s) 132
XapI RAATTY 2 cut(s) 9, 894
XbaI TCTAGA 1 cut(s) 1174
XceI RCATGY 2 cut(s) 1168, 1219
XmaI CCCGGG 1 cut(s) 1225
XmiI GTMKAC 1 cut(s) 1212
XspI CTAG 5 cut(s) 255, 276, 297, 318, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.