Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004498

Physical Location & Seq

Genomic Coordinates Forward (+)

23004695 .. 23006876

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAGGAGAACGGAAGCAGCAGGAAACAAGGTGCACCCTCGCCGTGTGCAGCATGCAAGCTTCTCAGAAGGAGGTGCGCTCAGGATTGTGTGTTTGCTCCCTATTTTCCTGCGGATGAGCCCCAAAAGTTTGCTAATGTTCACAAAGTGTTTGGTGCCAGCAATGTCAACAAGATGTTGCAGGAGCTGCCAGAGCACCAAAGAGGAGATGCAGTAAGTAGCATGGTGTATGAAGCAAATGCCAGGGTGCGAGACCCAGTTTATGGTTGTGTTGGGGCAATTTCGTCCCTACAACAACAGATTGATGTGCTTCAAACCCAACTGGCTCTAGCTCAGGCAGAGGTGGTGCACCTCAGGGTGCGTCAGACTGCATCATTCTCTAACCATGGGTTAAGTCCGGCTAGCCCAAGTAATAGTGGGTCACCCCCATCTAAGTTCATGGGTTCTCAGGCCCGGCCTATTTTCGACATGGATATGATGGTGGACCATACCAGCTTGGGATTGGGAGAGTCCATGTGGTCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

176

Amino Acids

19.03

Weight (kDa)

8.25

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31320
fragaria_vesca	FvH4_3g11810 FvH4_3g15570
malus_domestica	MD05G1222100.v1.1 MD05G1259100.v1.1 MD10G1238700.v1.1
prunus_persica	Prupe.4G105700_v2.0.a1 Prupe.4G138200_v2.0.a1
pyrus_communis	pycom05g20480 pycom10g17430 pycom10g19970
rosa_chinensis	RchiOBHm_Chr5g0019231 RchiOBHm_Chr5g0026191
rosa_laevigata	RLG00000032430 RLG00000032911
rosa_multiflora	Rmu_sc0002561.1_g000005 Rmu_sc0002909.1_g000009
rosa_roxburghii	Rroxscaffold_1G00053110 Rroxscaffold_1G00058760 Rroxscaffold_1G00074180
rosa_rugosa	Rorug05G0048500 Rorug05G0091600
rosa_samantha	Rh5AG139900 Rh5AG184400 Rh5BG138900 Rh5BG181200 Rh5CG150300 Rh5DG139500 Rh5DG182800
rosa_wichuraiana	Rw5G012440 Rw5G016690 Rw5G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	263
AciI	CCGC	1 cut(s)	113
AdeI	CACNNNGTG	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	4 cut(s)	61, 187, 332, 495
AluI	AGCT	4 cut(s)	61, 187, 332, 495
Alw21I	GWGCWC	3 cut(s)	37, 198, 351
Alw26I	GTCTC	1 cut(s)	246
Alw44I	GTGCAC	2 cut(s)	33, 347
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	450, 455
ApaLI	GTGCAC	2 cut(s)	33, 347
ApeKI	GCWGC	3 cut(s)	18, 50, 187
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	451, 484
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	414
AsuNHI	GCTAGC	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	484
AxyI	CCTNAGG	1 cut(s)	353
BaeGI	GKGCMC	2 cut(s)	37, 351
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	3 cut(s)	37, 198, 351
BbvI	GCAGC	3 cut(s)	30, 62, 174
BccI	CCATC	2 cut(s)	436, 472
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	329, 402
BisI	GCNGC	3 cut(s)	19, 51, 188
BlsI	GCNGC	3 cut(s)	20, 52, 189
Bme1390I	CCNGG	2 cut(s)	244, 454
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	451, 484
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	244, 454
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	199, 380
BmtI	GCTAGC	1 cut(s)	405
BmuI	ACTGGG	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
Bpu10I	CCTNAGC	2 cut(s)	81, 333
BpuMI	CCSGG	1 cut(s)	454
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	243, 385
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	257, 327
Bse21I	CCTNAGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	243, 385
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	5 cut(s)	79, 95, 347, 367, 461
BseNI	ACTGG	2 cut(s)	257, 327
BseRI	GAGGAG	1 cut(s)	219
BseSI	GKGCMC	2 cut(s)	37, 351
BseXI	GCAGC	3 cut(s)	30, 62, 174
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	452, 457
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	3 cut(s)	37, 198, 351
BsiSI	CCGG	2 cut(s)	398, 454
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	452, 457
Bso31I	GGTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	4 cut(s)	37, 123, 198, 351
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	2 cut(s)	452, 457
BspCNI	CTCAG	5 cut(s)	78, 94, 346, 366, 460
BspLI	GGNNCC	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	257, 327
BssECI	CCNNGG	2 cut(s)	243, 385
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	244
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstC8I	GCNNGC	4 cut(s)	55, 59, 160, 403
BstDEI	CTNAG	6 cut(s)	65, 81, 333, 353, 432, 447
BstDSI	CCRYGG	1 cut(s)	385
BstEII	GGTNACC	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 193
BstNI	CCWGG	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	57
BstPI	GGTNACC	1 cut(s)	420
BstSCI	CCNGG	2 cut(s)	242, 452
BstSLI	GKGCMC	2 cut(s)	37, 351
BstV1I	GCAGC	3 cut(s)	30, 62, 174
Bsu36I	CCTNAGG	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	452, 457
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	4 cut(s)	55, 59, 160, 403
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	451, 484
CseI	GACGC	1 cut(s)	350
CviAII	CATG	7 cut(s)	54, 223, 386, 439, 469, 514, 522
DdeI	CTNAG	6 cut(s)	65, 81, 333, 353, 432, 447
DraIII	CACNNNGTG	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	484
Eco81I	CCTNAGG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	420
EcoO65I	GGTNACC	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	7 cut(s)	57, 226, 389, 442, 472, 517, 525
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	7 cut(s)	53, 222, 385, 438, 468, 513, 521
Fnu4HI	GCNGC	3 cut(s)	19, 51, 188
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	3 cut(s)	19, 51, 188
FspBI	CTAG	2 cut(s)	329, 402
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	19, 51, 188
HaeIII	GGCC	2 cut(s)	452, 457
HapII	CCGG	2 cut(s)	398, 454
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	7 cut(s)	57, 226, 389, 442, 472, 517, 525
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	509
HpaII	CCGG	2 cut(s)	398, 454
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	5 cut(s)	35, 142, 169, 349, 484
Hpy188I	TCNGA	2 cut(s)	68, 366
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	5 cut(s)	35, 142, 169, 349, 484
HpyAV	CCTTC	1 cut(s)	63
HpyCH4V	TGCA	7 cut(s)	35, 50, 57, 181, 212, 349, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 193
HpyF3I	CTNAG	6 cut(s)	65, 81, 333, 353, 432, 447
Hsp92II	CATG	7 cut(s)	57, 226, 389, 442, 472, 517, 525
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	103, 184
Lsp1109I	GCAGC	3 cut(s)	30, 62, 174
LweI	GCATC	2 cut(s)	199, 380
MaeI	CTAG	2 cut(s)	329, 402
MaeIII	GTNAC	1 cut(s)	420
MhlI	GDGCHC	4 cut(s)	37, 123, 198, 351
MluCI	AATT	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	5 cut(s)	49, 66, 197, 334, 362
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	2 cut(s)	398, 454
MspR9I	CCNGG	2 cut(s)	244, 454
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	187, 193
NciI	CCSGG	1 cut(s)	454
NcoI	CCATGG	1 cut(s)	385
NheI	GCTAGC	1 cut(s)	401
NlaIII	CATG	7 cut(s)	57, 226, 389, 442, 472, 517, 525
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	420
NspI	RCATGY	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	57
PflMI	CCANNNNNTGG	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	20, 52, 189
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	242
PspEI	GGTNACC	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	2 cut(s)	451, 484
PstNI	CAGNNNCTG	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	3 cut(s)	19, 51, 188
Sau96I	GGNCC	2 cut(s)	451, 484
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	2 cut(s)	244, 454
SduI	GDGCHC	4 cut(s)	37, 123, 198, 351
SetI	ASST	8 cut(s)	34, 63, 77, 189, 334, 345, 354, 497
SfaNI	GCATC	2 cut(s)	199, 380
SinI	GGWCC	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	473
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	2 cut(s)	329, 402
StyD4I	CCNGG	2 cut(s)	242, 452
StyI	CCWWGG	1 cut(s)	385
TaqI	TCGA	1 cut(s)	465
TasI	AATT	1 cut(s)	279
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	3 cut(s)	18, 50, 187
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	3 cut(s)	17, 246, 427
TspGWI	ACGGA	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	263
VneI	GTGCAC	2 cut(s)	33, 347
VpaK11BI	GGWCC	1 cut(s)	484
XceI	RCATGY	1 cut(s)	57
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XspI	CTAG	2 cut(s)	329, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.