Rroxscaffold_1G00058760

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004498
Physical Location & Seq
Forward (+)
80743529 .. 80745372
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058760.1

Sequence Viewer

Length: 528 bp
ATGAAGGAGAATGGTTGCAGTAGGAAACAGGGTGCAGCTTCACCATGCGCAGCTTGTAAGCTACTGAGGAGGAGGTGTGCGCAGGACTGTGTTTTTTCTCCTTACTTTCCTGCAGATGAGCCCCAGAAGTTCGCTAATGTTCACAAAGTCTTTGGTGCCAGTAATGTCAACAAAATGTTGCAGGAGCTACCGGAGCACCAGAGAGGAGATGCGGTGAGTAGCATGGTGTATGAAGCAAATGCAAGGGTCCGGGACCCGGTTTACGGGTGCGTCGGGGCCATATCATCTCTGCAACAACAGATTGATGTGCTTCAAACTCAACTCGCTCTGGCTCAGGCTGAGGTGGTGCACCTTAGGGTTAGGCAGACGCAGTCCATCTCCAACCACGGGCTGAGCCCCGCGAGCCCAAGTAATAGCGGCTCGCCGTCGTCGCGGTTCATTGGTTCACAGCCCCGGCCCATTTTCGACATGGATATGATGATGGACCATAGCAGCTTGGGATTGGGAGAGTCCATGTGGTCCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

175

Amino Acids

19.1

Weight (kDa)

8.2

Isoelectric Point (pI)

66.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 15 - 112 1.4e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 49, 81
AccB1I GGYRCC 1 cut(s) 155
AccII CGCG 2 cut(s) 401, 433
AciI CCGC 4 cut(s) 212, 399, 417, 433
AfiI CCNNNNNNNGG 3 cut(s) 256, 263, 387
AgsI TTSAA 1 cut(s) 314
AluBI AGCT 5 cut(s) 38, 53, 61, 187, 495
AluI AGCT 5 cut(s) 38, 53, 61, 187, 495
Alw21I GWGCWC 2 cut(s) 198, 351
Alw44I GTGCAC 1 cut(s) 347
AoxI GGCC 2 cut(s) 276, 455
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 3 cut(s) 35, 50, 492
AspLEI GCGC 2 cut(s) 50, 82
AspS9I GGNCC 6 cut(s) 247, 253, 276, 456, 484, 519
AsuC2I CCSGG 3 cut(s) 251, 257, 454
AsuHPI GGTGA 2 cut(s) 33, 226
AvaII GGWCC 4 cut(s) 247, 253, 484, 519
AxyI CCTNAGG 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 3 cut(s) 123, 398, 407
Bbv12I GWGCWC 2 cut(s) 198, 351
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 3 cut(s) 47, 62, 504
BccI CCATC 2 cut(s) 383, 475
BceAI ACGGC 1 cut(s) 409
BcnI CCSGG 3 cut(s) 251, 257, 454
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 4 cut(s) 36, 51, 418, 493
BlpI GCTNAGC 1 cut(s) 392
BlsI GCNGC 4 cut(s) 37, 52, 419, 494
Bme1390I CCNGG 3 cut(s) 251, 257, 454
Bme18I GGWCC 4 cut(s) 247, 253, 484, 519
BmgT120I GGNCC 6 cut(s) 247, 253, 276, 456, 484, 519
BmiI GGNNCC 5 cut(s) 157, 248, 254, 255, 277
BmrFI CCNGG 3 cut(s) 251, 257, 454
BmsI GCATC 1 cut(s) 199
Bpu10I CCTNAGC 2 cut(s) 333, 339
Bpu1102I GCTNAGC 1 cut(s) 392
BpuMI CCSGG 3 cut(s) 251, 257, 454
BsaJI CCNNGG 2 cut(s) 385, 452
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 198, 228
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 263, 387
Bse1I ACTGG 1 cut(s) 159
Bse21I CCTNAGG 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 385, 452
BseLI CCNNNNNNNGG 3 cut(s) 256, 263, 387
BseMII CTCAG 4 cut(s) 56, 330, 347, 383
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 3 cut(s) 82, 85, 219
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 3 cut(s) 47, 62, 504
BsgI GTGCAG 1 cut(s) 54
Bsh1236I CGCG 2 cut(s) 401, 433
BshFI GGCC 2 cut(s) 278, 457
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 198, 351
BsiSI CCGG 4 cut(s) 191, 250, 257, 454
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 3 cut(s) 256, 263, 387
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 2 cut(s) 278, 457
Bsp1286I GDGCHC 5 cut(s) 123, 198, 351, 398, 407
Bsp1720I GCTNAGC 1 cut(s) 392
BspACI CCGC 4 cut(s) 212, 399, 417, 433
BspANI GGCC 2 cut(s) 278, 457
BspCNI CTCAG 4 cut(s) 57, 331, 346, 384
BspFNI CGCG 2 cut(s) 401, 433
BspLI GGNNCC 5 cut(s) 157, 248, 254, 255, 277
BspMAI CTGCAG 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 385, 452
Bst4CI ACNGT 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 403, 422
BstDEI CTNAG 5 cut(s) 65, 333, 339, 353, 392
BstDSI CCRYGG 1 cut(s) 385
BstFNI CGCG 2 cut(s) 401, 433
BstHHI GCGC 2 cut(s) 50, 82
BstMWI GCNNNNNNNGC 3 cut(s) 193, 402, 430
BstSCI CCNGG 3 cut(s) 249, 255, 452
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 351
BstUI CGCG 2 cut(s) 401, 433
BstV1I GCAGC 3 cut(s) 47, 62, 504
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 2 cut(s) 278, 457
BtgI CCRYGG 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 403, 422
CfoI GCGC 2 cut(s) 50, 82
Cfr13I GGNCC 6 cut(s) 247, 253, 276, 456, 484, 519
CseI GACGC 2 cut(s) 259, 376
CviAII CATG 4 cut(s) 45, 223, 469, 514
DdeI CTNAG 5 cut(s) 65, 333, 339, 353, 392
Eco24I GRGCYC 3 cut(s) 123, 398, 407
Eco47I GGWCC 4 cut(s) 247, 253, 484, 519
Eco81I CCTNAGG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 253
EcoT38I GRGCYC 3 cut(s) 123, 398, 407
FaeI CATG 4 cut(s) 48, 226, 472, 517
FaiI YATR 8 cut(s) 46, 224, 231, 281, 470, 476, 489, 515
FaqI GGGAC 1 cut(s) 266
FatI CATG 4 cut(s) 44, 222, 468, 513
FauI CCCGC 1 cut(s) 406
Fnu4HI GCNGC 4 cut(s) 36, 51, 418, 493
FriOI GRGCYC 3 cut(s) 123, 398, 407
Fsp4HI GCNGC 4 cut(s) 36, 51, 418, 493
FspI TGCGCA 2 cut(s) 49, 81
GlaI GCGC 2 cut(s) 49, 81
GluI GCNGC 4 cut(s) 36, 51, 418, 493
HaeIII GGCC 2 cut(s) 278, 457
HapII CCGG 4 cut(s) 191, 250, 257, 454
HgaI GACGC 2 cut(s) 259, 376
HhaI GCGC 2 cut(s) 50, 82
Hin1II CATG 4 cut(s) 48, 226, 472, 517
Hin6I GCGC 2 cut(s) 48, 80
HinP1I GCGC 2 cut(s) 48, 80
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 509
HpaII CCGG 4 cut(s) 191, 250, 257, 454
HphI GGTGA 2 cut(s) 33, 226
Hpy166II GTNNAC 5 cut(s) 142, 169, 262, 349, 446
Hpy8I GTNNAC 5 cut(s) 142, 169, 262, 349, 446
Hpy99I CGWCG 3 cut(s) 275, 430, 433
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 7 cut(s) 18, 35, 113, 181, 242, 292, 349
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 402, 430
HpyF3I CTNAG 5 cut(s) 65, 333, 339, 353, 392
Hsp92II CATG 4 cut(s) 48, 226, 472, 517
HspAI GCGC 2 cut(s) 48, 80
KflI GGGWCCC 1 cut(s) 253
LmnI GCTCC 2 cut(s) 184, 193
Lsp1109I GCAGC 3 cut(s) 47, 62, 504
LweI GCATC 1 cut(s) 199
MhlI GDGCHC 5 cut(s) 123, 198, 351, 398, 407
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 5 cut(s) 60, 63, 66, 197, 334
MslI CAYNNNNRTG 1 cut(s) 473
MspI CCGG 4 cut(s) 191, 250, 257, 454
MspR9I CCNGG 3 cut(s) 251, 257, 454
MvnI CGCG 2 cut(s) 401, 433
MwoI GCNNNNNNNGC 3 cut(s) 193, 402, 430
NciI CCSGG 3 cut(s) 251, 257, 454
NlaIII CATG 4 cut(s) 48, 226, 472, 517
NlaIV GGNNCC 5 cut(s) 157, 248, 254, 255, 277
NsbI TGCGCA 2 cut(s) 49, 81
PflFI GACNNNGTC 1 cut(s) 370
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 4 cut(s) 37, 52, 419, 494
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
PspN4I GGNNCC 5 cut(s) 157, 248, 254, 255, 277
PspPI GGNCC 6 cut(s) 247, 253, 276, 456, 484, 519
PspPPI RGGWCCY 1 cut(s) 253
PstI CTGCAG 1 cut(s) 115
PsyI GACNNNGTC 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 473
SatI GCNGC 4 cut(s) 36, 51, 418, 493
Sau96I GGNCC 6 cut(s) 247, 253, 276, 456, 484, 519
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 3 cut(s) 251, 257, 454
SduI GDGCHC 5 cut(s) 123, 198, 351, 398, 407
SetI ASST 8 cut(s) 40, 55, 63, 77, 189, 345, 354, 497
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 4 cut(s) 247, 253, 484, 519
SmiMI CAYNNNNRTG 1 cut(s) 473
SsiI CCGC 4 cut(s) 212, 399, 417, 433
StyD4I CCNGG 3 cut(s) 249, 255, 452
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 465
TauI GCSGC 1 cut(s) 420
TseI GCWGC 3 cut(s) 35, 50, 492
TspDTI ATGAA 3 cut(s) 17, 246, 427
Tth111I GACNNNGTC 1 cut(s) 370
VneI GTGCAC 1 cut(s) 347
VpaK11BI GGWCC 4 cut(s) 247, 253, 484, 519
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.