Rh5AG184400

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004498
Physical Location & Seq
Reverse (-)
21041695 .. 21047098
5404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG184400.1

Sequence Viewer

Length: 552 bp
ATGAAGGAGATCAGCGGTAGAAAACAAGGTGGAATGTCTCCATGCGCAGCATGCAAGCTTCTGAGAAGGAGGTGTGCGCAGGATTGTGTGTTTGCTCCTTATTTTCCAGCTGATGAGCCTCACAAGTTTGCAAGTGTGCACAAGGTTTTTGGTGCTAGCAATGTCAACAAGATGCTACAGGAATTACCAGAGCACCAGCGCAGTGATGCAGTGAGTTCGATGGTGTACGAGGCAAACGCTCGAGTAAGAGACCCTGTGTACGGCTGTGTTGGTGCAATCTCATCTCTACAGCAACAGATCGACGTCCTCCAAACTCAACTAGCCATTGCACAAGCTGAGGTGGTGCACATGAAAATGAATCAATTGCCTTCTGCATCATCTCCCGCAGCCACATCAGAAAACACCTCTCCCATCTCAGTCAAGCAAATAATGCCTAATAATAATAATAATAATAATAATTCTCACCATCATTATCATCCTCATCAGACCACCAAATCCTTTTTTACAATGGACATGGTGGTAGATCAGGCCAATTCTTTGTGGTCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

183

Amino Acids

20.26

Weight (kDa)

8.24

Isoelectric Point (pI)

67.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 14 - 111 1.5e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 306
Acc16I TGCGCA 2 cut(s) 46, 78
AciI CCGC 2 cut(s) 15, 384
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 227, 260
AfiI CCNNNNNNNGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 58, 110, 335
AluI AGCT 3 cut(s) 58, 110, 335
Alw21I GWGCWC 3 cut(s) 141, 195, 348
Alw26I GTCTC 2 cut(s) 42, 243
Alw44I GTGCAC 2 cut(s) 137, 344
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 1 cut(s) 528
ApaLI GTGCAC 2 cut(s) 137, 344
ApeKI GCWGC 2 cut(s) 47, 386
AspLEI GCGC 3 cut(s) 47, 79, 201
AsuHPI GGTGA 1 cut(s) 455
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 141, 348
Bbv12I GWGCWC 3 cut(s) 141, 195, 348
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 59, 398
BccI CCATC 3 cut(s) 214, 419, 474
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 2 cut(s) 42, 243
BfaI CTAG 3 cut(s) 156, 320, 550
BfmI CTRYAG 2 cut(s) 176, 287
BisI GCNGC 2 cut(s) 48, 387
BlsI GCNGC 2 cut(s) 49, 388
BmeT110I CYCGRG 1 cut(s) 240
BmsI GCATC 3 cut(s) 162, 196, 383
BmtI GCTAGC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse3DI GCAATG 2 cut(s) 166, 324
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 2 cut(s) 166, 324
BseMII CTCAG 3 cut(s) 53, 327, 429
BseSI GKGCMC 2 cut(s) 141, 348
BseXI GCAGC 2 cut(s) 59, 398
BshFI GGCC 1 cut(s) 530
BsiHKAI GWGCWC 3 cut(s) 141, 195, 348
BsiHKCI CYCGRG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 42, 243
BsnI GGCC 1 cut(s) 530
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 3 cut(s) 141, 195, 348
Bsp143I GATC 3 cut(s) 9, 297, 523
BspACI CCGC 2 cut(s) 15, 384
BspANI GGCC 1 cut(s) 530
BspCNI CTCAG 3 cut(s) 54, 328, 428
BspOI GCTAGC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 166, 324
BssMI GATC 3 cut(s) 9, 297, 523
BssNI GRCGYC 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 430
BstC8I GCNNGC 3 cut(s) 52, 56, 157
BstDEI CTNAG 3 cut(s) 62, 336, 415
BstF5I GGATG 1 cut(s) 475
BstHHI GCGC 3 cut(s) 47, 79, 201
BstKTI GATC 3 cut(s) 12, 300, 526
BstMAI GTCTC 2 cut(s) 42, 243
BstMBI GATC 3 cut(s) 9, 297, 523
BstMWI GCNNNNNNNGC 2 cut(s) 51, 430
BstNSI RCATGY 1 cut(s) 54
BstSFI CTRYAG 2 cut(s) 176, 287
BstSLI GKGCMC 2 cut(s) 141, 348
BstV1I GCAGC 2 cut(s) 59, 398
BsuRI GGCC 1 cut(s) 530
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 2 cut(s) 208, 216
BtsIMutI CAGTG 2 cut(s) 208, 216
Cac8I GCNNGC 3 cut(s) 52, 56, 157
CfoI GCGC 3 cut(s) 47, 79, 201
Csp6I GTAC 2 cut(s) 226, 259
CviAII CATG 5 cut(s) 42, 51, 349, 514, 546
CviJI RGCY 8 cut(s) 58, 110, 118, 264, 323, 335, 389, 530
CviKI_1 RGCY 8 cut(s) 58, 110, 118, 264, 323, 335, 389, 530
CviQI GTAC 2 cut(s) 226, 259
DdeI CTNAG 3 cut(s) 62, 336, 415
DpnI GATC 3 cut(s) 11, 299, 525
DpnII GATC 3 cut(s) 9, 297, 523
Eco31I GGTCTC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 240
FaeI CATG 5 cut(s) 45, 54, 352, 517, 549
FaiI YATR 5 cut(s) 43, 52, 350, 515, 547
FatI CATG 5 cut(s) 41, 50, 348, 513, 545
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 48, 387
FokI GGATG 1 cut(s) 462
Fsp4HI GCNGC 2 cut(s) 48, 387
FspBI CTAG 3 cut(s) 156, 320, 550
FspI TGCGCA 2 cut(s) 46, 78
GlaI GCGC 3 cut(s) 46, 78, 200
GluI GCNGC 2 cut(s) 48, 387
HaeIII GGCC 1 cut(s) 530
HhaI GCGC 3 cut(s) 47, 79, 201
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 5 cut(s) 45, 54, 352, 517, 549
Hin6I GCGC 3 cut(s) 45, 77, 199
HinP1I GCGC 3 cut(s) 45, 77, 199
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 358
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 5 cut(s) 139, 166, 226, 259, 346
Hpy188I TCNGA 3 cut(s) 63, 397, 486
Hpy8I GTNNAC 5 cut(s) 139, 166, 226, 259, 346
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 60, 378
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 8 cut(s) 54, 131, 139, 209, 275, 329, 346, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 430
HpyF3I CTNAG 3 cut(s) 62, 336, 415
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 5 cut(s) 45, 54, 352, 517, 549
HspAI GCGC 3 cut(s) 45, 77, 199
Kzo9I GATC 3 cut(s) 9, 297, 523
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 65, 120, 164, 201, 209, 267, 512
Lsp1109I GCAGC 2 cut(s) 59, 398
LweI GCATC 3 cut(s) 162, 196, 383
MaeI CTAG 3 cut(s) 156, 320, 550
MaeII ACGT 1 cut(s) 303
MalI GATC 3 cut(s) 11, 299, 525
MboI GATC 3 cut(s) 9, 297, 523
MfeI CAATTG 1 cut(s) 362
MhlI GDGCHC 3 cut(s) 141, 195, 348
MluCI AATT 4 cut(s) 182, 362, 457, 532
MnlI CCTC 7 cut(s) 63, 129, 223, 317, 331, 415, 489
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 2 cut(s) 15, 110
MunI CAATTG 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 51, 430
NdeII GATC 3 cut(s) 9, 297, 523
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 5 cut(s) 45, 54, 352, 517, 549
NsbI TGCGCA 2 cut(s) 46, 78
NspI RCATGY 1 cut(s) 54
PaeI GCATGC 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 240
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 2 cut(s) 49, 388
PspXI VCTCGAGB 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 227, 260
RsaNI GTAC 2 cut(s) 226, 259
RseI CAYNNNNRTG 1 cut(s) 353
SatI GCNGC 2 cut(s) 48, 387
Sau3AI GATC 3 cut(s) 9, 297, 523
SduI GDGCHC 3 cut(s) 141, 195, 348
SetI ASST 9 cut(s) 31, 60, 74, 112, 147, 306, 337, 342, 407
SfaNI GCATC 3 cut(s) 162, 196, 383
SfcI CTRYAG 2 cut(s) 176, 287
Sfr274I CTCGAG 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SphI GCATGC 1 cut(s) 54
Sse9I AATT 4 cut(s) 182, 362, 457, 532
SsiI CCGC 2 cut(s) 15, 384
SspMI CTAG 3 cut(s) 156, 320, 550
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 218, 241, 300
TasI AATT 4 cut(s) 182, 362, 457, 532
TfiI GAWTC 1 cut(s) 358
TscAI CASTG 2 cut(s) 208, 216
TseI GCWGC 2 cut(s) 47, 386
TspDTI ATGAA 3 cut(s) 17, 365, 371
TspRI CASTG 2 cut(s) 208, 216
VneI GTGCAC 2 cut(s) 137, 344
XceI RCATGY 1 cut(s) 54
XhoI CTCGAG 1 cut(s) 240
XspI CTAG 3 cut(s) 156, 320, 550
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.