Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004498

Physical Location & Seq

Genomic Coordinates Forward (+)

20671656 .. 20676473

Gene Structure 4818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAGGAGACTGGTAGAAAACAAGGTGCTATGTCTCCATGCGCAGCATGCAAACTTCTGCGAAGGAGATGCGCTCAGGACTGTGTTTTTGCTCCTTATTTTCCAGCTGACGAGCCCCAGAAGTTTGCCAGTGTCCACAAGGTTTTTGGTGCTAGCAATGTCAACAAGATGCTACAGGAATTACCAGAGCACCAACGCAGTGATGCAGTGAGTTCCATGGTGTATGAAGCAAATGCAAGAGTCCGGGATCCAGTGTACGGTTGTGTTGGAGCAATATCATCTTTACAACAACAAATCGACGCCCTCCAAACCCAATTGGCCATTGCACAAGCTGAGGTGGTGCACATGAGAATGGGCCAATTCCCTACTACCACTACTATTGCTTCAACGACTACTTGCTCACCAGACCAAAAGATGGCACCTGATAATTCTCATCATCATCGTAACCATCAAACGGCTACCACCAAGTCCTTTTTTTCTATGGACATAGTAGATCAGGCCAATATGGGAGAGTCTTTGTGGTCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

177

Amino Acids

19.44

Weight (kDa)

7.64

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31320
fragaria_vesca	FvH4_3g11810 FvH4_3g15570
malus_domestica	MD05G1222100.v1.1 MD05G1259100.v1.1 MD10G1238700.v1.1
prunus_persica	Prupe.4G105700_v2.0.a1 Prupe.4G138200_v2.0.a1
pyrus_communis	pycom05g20480 pycom10g17430 pycom10g19970
rosa_chinensis	RchiOBHm_Chr5g0019231 RchiOBHm_Chr5g0026191
rosa_laevigata	RLG00000032430 RLG00000032911
rosa_multiflora	Rmu_sc0002561.1_g000005 Rmu_sc0002909.1_g000009
rosa_roxburghii	Rroxscaffold_1G00053110 Rroxscaffold_1G00058760 Rroxscaffold_1G00074180
rosa_rugosa	Rorug05G0048500 Rorug05G0091600
rosa_samantha	Rh5AG139900 Rh5AG184400 Rh5BG138900 Rh5BG181200 Rh5CG150300 Rh5DG139500 Rh5DG182800
rosa_wichuraiana	Rw5G012440 Rw5G016690 Rw5G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	415
AclWI	GGATC	2 cut(s)	242, 255
AcoI	YGGCCR	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	3 cut(s)	257, 415, 454
AgsI	TTSAA	1 cut(s)	387
AluBI	AGCT	2 cut(s)	107, 332
AluI	AGCT	2 cut(s)	107, 332
Alw21I	GWGCWC	2 cut(s)	192, 345
Alw26I	GTCTC	2 cut(s)	2, 39
Alw44I	GTGCAC	1 cut(s)	341
AlwI	GGATC	2 cut(s)	242, 255
AoxI	GGCC	3 cut(s)	318, 355, 498
ApaLI	GTGCAC	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	2 cut(s)	44, 74
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	393
AsuNHI	GCTAGC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	2 cut(s)	192, 345
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	409, 456
BceAI	ACGGC	1 cut(s)	471
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	2, 39
BfaI	CTAG	2 cut(s)	153, 529
BfmI	CTRYAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	249, 420
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	3 cut(s)	59, 159, 193
BmtI	GCTAGC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
Bpu10I	CCTNAGC	2 cut(s)	75, 333
BpuMI	CCSGG	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 415, 454
Bse1I	ACTGG	3 cut(s)	16, 129, 251
Bse3DI	GCAATG	2 cut(s)	163, 321
BseDI	CCNNGG	1 cut(s)	216
BseLI	CCNNNNNNNGG	3 cut(s)	257, 415, 454
BseMI	GCAATG	2 cut(s)	163, 321
BseMII	CTCAG	2 cut(s)	89, 324
BseNI	ACTGG	3 cut(s)	16, 129, 251
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	56
BshFI	GGCC	3 cut(s)	320, 357, 500
BshNI	GGYRCC	1 cut(s)	418
BsiHKAI	GWGCWC	2 cut(s)	192, 345
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	257, 415, 454
BsmAI	GTCTC	2 cut(s)	2, 39
BsnI	GGCC	3 cut(s)	320, 357, 500
Bsp1286I	GDGCHC	3 cut(s)	117, 192, 345
Bsp143I	GATC	2 cut(s)	247, 493
Bsp19I	CCATGG	1 cut(s)	216
BspANI	GGCC	3 cut(s)	320, 357, 500
BspCNI	CTCAG	2 cut(s)	88, 325
BspLI	GGNNCC	2 cut(s)	249, 420
BspOI	GCTAGC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	242, 255
BspT107I	GGYRCC	1 cut(s)	418
BsrDI	GCAATG	2 cut(s)	163, 321
BsrI	ACTGG	3 cut(s)	16, 129, 251
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	247, 493
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	83, 260
BstACI	GRCGYC	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	49, 154
BstDEI	CTNAG	2 cut(s)	75, 333
BstDSI	CCRYGG	1 cut(s)	216
BstHHI	GCGC	2 cut(s)	44, 74
BstKTI	GATC	2 cut(s)	250, 496
BstMAI	GTCTC	2 cut(s)	2, 39
BstMBI	GATC	2 cut(s)	247, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	320, 357, 500
BtgI	CCRYGG	1 cut(s)	216
BtsI	GCAGTG	2 cut(s)	205, 213
BtsIMutI	CAGTG	4 cut(s)	136, 205, 213, 258
Cac8I	GCNNGC	2 cut(s)	49, 154
CfoI	GCGC	2 cut(s)	44, 74
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	256
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	5 cut(s)	39, 48, 217, 346, 525
CviJI	RGCY	7 cut(s)	107, 115, 320, 332, 357, 458, 500
CviKI_1	RGCY	7 cut(s)	107, 115, 320, 332, 357, 458, 500
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	75, 333
DpnI	GATC	2 cut(s)	249, 495
DpnII	GATC	2 cut(s)	247, 493
EaeI	YGGCCR	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	5 cut(s)	42, 51, 220, 349, 528
FatI	CATG	5 cut(s)	38, 47, 216, 345, 524
Fnu4HI	GCNGC	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	2 cut(s)	153, 529
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	2 cut(s)	43, 73
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	320, 357, 500
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	2 cut(s)	44, 74
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	5 cut(s)	42, 51, 220, 349, 528
Hin6I	GCGC	2 cut(s)	42, 72
HinP1I	GCGC	2 cut(s)	42, 72
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	240, 512
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	1 cut(s)	393
Hpy166II	GTNNAC	4 cut(s)	136, 163, 256, 343
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	4 cut(s)	136, 163, 256, 343
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	2 cut(s)	83, 260
HpyCH4V	TGCA	5 cut(s)	51, 206, 236, 326, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	2 cut(s)	75, 333
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	5 cut(s)	42, 51, 220, 349, 528
HspAI	GCGC	2 cut(s)	42, 72
Kzo9I	GATC	2 cut(s)	247, 493
LmnI	GCTCC	2 cut(s)	97, 269
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	3 cut(s)	59, 159, 193
MaeI	CTAG	2 cut(s)	153, 529
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	2 cut(s)	249, 495
MboI	GATC	2 cut(s)	247, 493
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	3 cut(s)	117, 192, 345
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	4 cut(s)	179, 314, 359, 427
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	2 cut(s)	249, 521
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	2 cut(s)	314, 328
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	2 cut(s)	247, 493
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	5 cut(s)	42, 51, 220, 349, 528
NlaIV	GGNNCC	2 cut(s)	249, 420
NsbI	TGCGCA	1 cut(s)	43
NspI	RCATGY	1 cut(s)	51
PaeI	GCATGC	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	415
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	2 cut(s)	248, 520
PpsI	GAGTC	2 cut(s)	248, 520
PspN4I	GGNNCC	2 cut(s)	249, 420
PspPI	GGNCC	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	350
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	247, 493
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	2 cut(s)	249, 521
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	3 cut(s)	117, 192, 345
SetI	ASST	6 cut(s)	28, 109, 144, 334, 339, 424
SfaNI	GCATC	3 cut(s)	59, 159, 193
SfcI	CTRYAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	350
SphI	GCATGC	1 cut(s)	51
Sse9I	AATT	4 cut(s)	179, 314, 359, 427
SspMI	CTAG	2 cut(s)	153, 529
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	83, 260
TaqI	TCGA	1 cut(s)	297
TasI	AATT	4 cut(s)	179, 314, 359, 427
TscAI	CASTG	4 cut(s)	136, 205, 213, 258
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	17, 240
TspRI	CASTG	4 cut(s)	136, 205, 213, 258
Van91I	CCANNNNNTGG	1 cut(s)	415
VneI	GTGCAC	1 cut(s)	341
XceI	RCATGY	1 cut(s)	51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XspI	CTAG	2 cut(s)	153, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.