RLG00000032911

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004498
Physical Location & Seq
Reverse (-)
20703868 .. 20707151
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032911

Sequence Viewer

Length: 570 bp
ATGAAGGAGATCAGTGGTAGAAAACAAGGTGGAATGTCTCCATGCGCAGCATGCAAGCTTCTGAGAAGGAGGTGTGCGCAGGATTGTGTGTTTGCTCCTTATTTTCCAGCTGATGAGCCTCACAAGTTTGCAAGTGTGCACAAGGTTTTTGGTGCTAGCAATGTCAACAAGATGCTACAGGAATTACCAGAGCAGCAGCGCAGTGATGCAGTGAGTTCGATGGTGTACGAGGCAAACGCTCGAGTAAGAGACCCTGTGTACGGCTGTGTTGGTGCAATCTCATCTCTACAGCAACAGATCGACGTCCTCCAAACTCAACTGGCCATTGCACAAGCTGAGGTGGTGCACATGAAAATGAATCAATTGCCTTCTGCATCATCTCCCGCAGCCACATCAGAAAACACCTCCCCCATCTCGGTCAAGCAAATAATGCCTAATAATAATAATAATAATAATAATAATAATAATAATAATAATTCTCACCATCATTATCATCCTCATCAGACCACCAAATCCTTTTTTACAATGGACATGGTGGTAGATCAGGCCAATTCTTTGTGGTCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

190

Amino Acids

20.93

Weight (kDa)

8.24

Isoelectric Point (pI)

68.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 14 - 111 1.9e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 306
Acc16I TGCGCA 2 cut(s) 46, 78
AciI CCGC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 227, 260
AfiI CCNNNNNNNGG 2 cut(s) 260, 415
AluBI AGCT 3 cut(s) 58, 110, 335
AluI AGCT 3 cut(s) 58, 110, 335
Alw21I GWGCWC 2 cut(s) 141, 348
Alw26I GTCTC 2 cut(s) 42, 243
Alw44I GTGCAC 2 cut(s) 137, 344
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 2 cut(s) 321, 546
ApaLI GTGCAC 2 cut(s) 137, 344
ApeKI GCWGC 4 cut(s) 47, 193, 196, 386
AspLEI GCGC 3 cut(s) 47, 79, 201
AsuHPI GGTGA 1 cut(s) 473
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 141, 348
BalI TGGCCA 1 cut(s) 323
Bbv12I GWGCWC 2 cut(s) 141, 348
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 4 cut(s) 59, 205, 208, 398
BccI CCATC 3 cut(s) 214, 419, 492
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 2 cut(s) 42, 243
BfaI CTAG 2 cut(s) 156, 568
BfmI CTRYAG 2 cut(s) 176, 287
BisI GCNGC 4 cut(s) 48, 194, 197, 387
BlsI GCNGC 4 cut(s) 49, 195, 198, 388
BmeT110I CYCGRG 1 cut(s) 240
BmsI GCATC 3 cut(s) 162, 196, 383
BmtI GCTAGC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 415
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 2 cut(s) 166, 324
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 2 cut(s) 260, 415
BseMI GCAATG 2 cut(s) 166, 324
BseMII CTCAG 2 cut(s) 53, 327
BseNI ACTGG 1 cut(s) 324
BseSI GKGCMC 2 cut(s) 141, 348
BseXI GCAGC 4 cut(s) 59, 205, 208, 398
BshFI GGCC 2 cut(s) 323, 548
BsiHKAI GWGCWC 2 cut(s) 141, 348
BsiHKCI CYCGRG 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 260, 415
BsmAI GTCTC 2 cut(s) 42, 243
BsnI GGCC 2 cut(s) 323, 548
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 141, 348
Bsp143I GATC 3 cut(s) 9, 297, 541
BspACI CCGC 1 cut(s) 384
BspANI GGCC 2 cut(s) 323, 548
BspCNI CTCAG 2 cut(s) 54, 328
BspOI GCTAGC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 166, 324
BsrI ACTGG 1 cut(s) 324
BssMI GATC 3 cut(s) 9, 297, 541
BssNI GRCGYC 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 430
BstC8I GCNNGC 3 cut(s) 52, 56, 157
BstDEI CTNAG 2 cut(s) 62, 336
BstF5I GGATG 1 cut(s) 493
BstHHI GCGC 3 cut(s) 47, 79, 201
BstKTI GATC 3 cut(s) 12, 300, 544
BstMAI GTCTC 2 cut(s) 42, 243
BstMBI GATC 3 cut(s) 9, 297, 541
BstMWI GCNNNNNNNGC 2 cut(s) 51, 430
BstNSI RCATGY 1 cut(s) 54
BstSFI CTRYAG 2 cut(s) 176, 287
BstSLI GKGCMC 2 cut(s) 141, 348
BstV1I GCAGC 4 cut(s) 59, 205, 208, 398
BsuRI GGCC 2 cut(s) 323, 548
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 2 cut(s) 208, 216
BtsIMutI CAGTG 3 cut(s) 19, 208, 216
Cac8I GCNNGC 3 cut(s) 52, 56, 157
CfoI GCGC 3 cut(s) 47, 79, 201
Csp6I GTAC 2 cut(s) 226, 259
CviAII CATG 5 cut(s) 42, 51, 349, 532, 564
CviJI RGCY 8 cut(s) 58, 110, 118, 264, 323, 335, 389, 548
CviKI_1 RGCY 8 cut(s) 58, 110, 118, 264, 323, 335, 389, 548
CviQI GTAC 2 cut(s) 226, 259
DdeI CTNAG 2 cut(s) 62, 336
DpnI GATC 3 cut(s) 11, 299, 543
DpnII GATC 3 cut(s) 9, 297, 541
EaeI YGGCCR 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 240
FaeI CATG 5 cut(s) 45, 54, 352, 535, 567
FaiI YATR 5 cut(s) 43, 52, 350, 533, 565
FatI CATG 5 cut(s) 41, 50, 348, 531, 563
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 4 cut(s) 48, 194, 197, 387
FokI GGATG 1 cut(s) 480
Fsp4HI GCNGC 4 cut(s) 48, 194, 197, 387
FspBI CTAG 2 cut(s) 156, 568
FspI TGCGCA 2 cut(s) 46, 78
GlaI GCGC 3 cut(s) 46, 78, 200
GluI GCNGC 4 cut(s) 48, 194, 197, 387
HaeIII GGCC 2 cut(s) 323, 548
HhaI GCGC 3 cut(s) 47, 79, 201
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 5 cut(s) 45, 54, 352, 535, 567
Hin6I GCGC 3 cut(s) 45, 77, 199
HinP1I GCGC 3 cut(s) 45, 77, 199
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 358
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 5 cut(s) 139, 166, 226, 259, 346
Hpy188I TCNGA 3 cut(s) 63, 397, 504
Hpy8I GTNNAC 5 cut(s) 139, 166, 226, 259, 346
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 60, 378
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 8 cut(s) 54, 131, 139, 209, 275, 329, 346, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 430
HpyF3I CTNAG 2 cut(s) 62, 336
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 5 cut(s) 45, 54, 352, 535, 567
HspAI GCGC 3 cut(s) 45, 77, 199
Kzo9I GATC 3 cut(s) 9, 297, 541
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 65, 120, 164, 201, 267, 305, 530
Lsp1109I GCAGC 4 cut(s) 59, 205, 208, 398
LweI GCATC 3 cut(s) 162, 196, 383
MaeI CTAG 2 cut(s) 156, 568
MaeII ACGT 1 cut(s) 303
MalI GATC 3 cut(s) 11, 299, 543
MboI GATC 3 cut(s) 9, 297, 541
MfeI CAATTG 1 cut(s) 362
MhlI GDGCHC 2 cut(s) 141, 348
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 4 cut(s) 182, 362, 475, 550
MluNI TGGCCA 1 cut(s) 323
MnlI CCTC 7 cut(s) 63, 129, 223, 317, 331, 415, 507
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 110
MunI CAATTG 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 51, 430
NdeII GATC 3 cut(s) 9, 297, 541
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 5 cut(s) 45, 54, 352, 535, 567
NsbI TGCGCA 2 cut(s) 46, 78
NspI RCATGY 1 cut(s) 54
PaeI GCATGC 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 240
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 4 cut(s) 49, 195, 198, 388
PspXI VCTCGAGB 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 227, 260
RsaNI GTAC 2 cut(s) 226, 259
RseI CAYNNNNRTG 1 cut(s) 353
SatI GCNGC 4 cut(s) 48, 194, 197, 387
Sau3AI GATC 3 cut(s) 9, 297, 541
SduI GDGCHC 2 cut(s) 141, 348
SetI ASST 9 cut(s) 31, 60, 74, 112, 147, 306, 337, 342, 407
SfaNI GCATC 3 cut(s) 162, 196, 383
SfcI CTRYAG 2 cut(s) 176, 287
Sfr274I CTCGAG 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SphI GCATGC 1 cut(s) 54
Sse9I AATT 4 cut(s) 182, 362, 475, 550
SsiI CCGC 1 cut(s) 384
SspMI CTAG 2 cut(s) 156, 568
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 218, 241, 300
TaqII GACCGA 1 cut(s) 406
TasI AATT 4 cut(s) 182, 362, 475, 550
TfiI GAWTC 1 cut(s) 358
TscAI CASTG 3 cut(s) 19, 208, 216
TseI GCWGC 4 cut(s) 47, 193, 196, 386
TspDTI ATGAA 3 cut(s) 17, 365, 371
TspRI CASTG 3 cut(s) 19, 208, 216
VneI GTGCAC 2 cut(s) 137, 344
XceI RCATGY 1 cut(s) 54
XhoI CTCGAG 1 cut(s) 240
XspI CTAG 2 cut(s) 156, 568
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.