AT1G42430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005878
Physical Location & Seq
Forward (+)
15891281 .. 15894576
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G42430.2

Sequence Viewer

Length: 1281 bp
ATGAGCGAAATGGCGGCTAGCTCCGCAATCTCTCTTCTCGATATCAAACTCCGACGATTCGGCGTTGGCGCAAGTAACCATGAATTGCGCCTAACTAAGTGGTTCAAAGGTGATCAAGCCGGAGCTCCGACGAGAAGATTCACCTGCTTCGCAGATATGTTGGCACCGATTCGCCGCTCTGAGAAGTCAGAGGAACGGCGTTTTGATCAGAAGATGAGTGCTCACGGTGCCGGAATCAAAACTTCTTCCTCTGCAGTGCCATTTGCTTCTCCTAAATCTCGATTTTTGTCTAAGCAAGAAAAGTTCTATCCTCGTTGTACTCCAAGGCTTACTGGTCCTCAGTCTCGTGATACTCCTCCTAAAAGAGACACTGGGATAGCTAATGAAAAGGATTGGGGGATTGATTTGTTGAATGAGAATGTGAATGAAGCTGGCACTAATGAAGATGGTAGTAGTTGGTTTAGAGAAAGTGGACATGATTTGGGAGATAATGGTTACAGATGTAGGTGGTCAAGGATGGGTGGTCGATCTCATGATGGTTCTTCTGAATGGACTGAAACGTGGTGGGAGAAAAGTGACTGGACTGGATACAAAGAGTTAGGTGTGGAGAAATCTGGTAAAAATTCTGAGGGTGACTCTTGGTGGGAAACTTGGCAAGAAGTCCTTCATCAAGATGAGTGGAGTAATCTAGCAAGGATTGAAAGGAGTGCACAAAAGCAAGCAAAATCAGGAACTGAAAATGCTGGTTGGTACGAGAAATGGTGGGAGAAGTACGATGCTAAAGGGTGGACAGAGAAAGGAGCACATAAGTATGGTAGACTTAATGAGCAGTCATGGTGGGAGAAGTGGGGGGAGCATTATGATGGAAGAGGATCTGTTCTCAAATGGACAGACAAGTGGGCTGAGACAGAGTTGGGGACCAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCAGTGGGATTGGTTCACGTCAGGGGGAGACATGGCATGTATCACCTAACAGCGACCGTTGGTCAAGAACGTGGGGAGAGGAACACTTTGGAAACGGAAAGGTTCACAAGTACGGAAAGAGTACCACAGGAGAAAGCTGGGACATAGTGGTGGATGAAGAAACATACTATGAGGCTGAGCCACATTATGGGTGGGCAGATGTGGTAGGTGATTCAACACAGTTGCTTTCGATCCAACCACGAGAGAGACCTCCGGGTGTCTACCCAAACCTCGAGTTTGGGCCATCTCCACCTCCTGAGCCTGACCTACCCCCTGACCAACCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

48.97

Weight (kDa)

5.7

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AccB1I GGYRCC 2 cut(s) 163, 227
AccB7I CCANNNNNTGG 1 cut(s) 1139
AccBSI CCGCTC 1 cut(s) 177
AccI GTMKAC 2 cut(s) 817, 1212
AciI CCGC 3 cut(s) 14, 24, 175
AclWI GGATC 2 cut(s) 880, 1177
AcsI RAATTY 2 cut(s) 622, 947
AfaI GTAC 5 cut(s) 319, 752, 773, 1064, 1075
AfiI CCNNNNNNNGG 1 cut(s) 1139
AgsI TTSAA 4 cut(s) 106, 412, 701, 1167
AhdI GACNNNNNGTC 1 cut(s) 1012
AjiI CACGTC 1 cut(s) 971
AluBI AGCT 5 cut(s) 21, 125, 380, 431, 1089
AluI AGCT 5 cut(s) 21, 125, 380, 431, 1089
Alw21I GWGCWC 4 cut(s) 127, 223, 712, 805
Alw26I GTCTC 6 cut(s) 348, 360, 899, 924, 974, 1192
Alw44I GTGCAC 1 cut(s) 708
AlwI GGATC 2 cut(s) 880, 1177
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 1223
AoxI GGCC 1 cut(s) 1232
ApaLI GTGCAC 1 cut(s) 708
ApoI RAATTY 2 cut(s) 622, 947
Asp700I GAANNNNTTC 2 cut(s) 663, 950
AspLEI GCGC 2 cut(s) 71, 90
AspS9I GGNCC 3 cut(s) 335, 918, 1232
AsuC2I CCSGG 1 cut(s) 1206
AsuHPI GGTGA 5 cut(s) 122, 133, 644, 987, 1172
AsuNHI GCTAGC 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 1223
AvaII GGWCC 2 cut(s) 335, 918
BaeGI GKGCMC 1 cut(s) 712
BanI GGYRCC 2 cut(s) 163, 227
BanII GRGCYC 1 cut(s) 127
BauI CACGAG 2 cut(s) 345, 1191
Bbv12I GWGCWC 4 cut(s) 127, 223, 712, 805
BccI CCATC 5 cut(s) 440, 511, 530, 857, 1243
BceAI ACGGC 1 cut(s) 212
BciVI GTATCC 1 cut(s) 581
BclI TGATCA 2 cut(s) 112, 205
BcnI CCSGG 1 cut(s) 1206
BcoDI GTCTC 6 cut(s) 348, 360, 899, 924, 974, 1192
BfaI CTAG 2 cut(s) 18, 689
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 152
BfuI GTATCC 1 cut(s) 581
BisI GCNGC 2 cut(s) 15, 175
BlpI GCTNAGC 1 cut(s) 1128
BlsI GCNGC 2 cut(s) 16, 176
Bme1390I CCNGG 1 cut(s) 1206
Bme18I GGWCC 2 cut(s) 335, 918
BmeRI GACNNNNNGTC 1 cut(s) 1012
BmeT110I CYCGRG 1 cut(s) 1223
BmgBI CACGTC 1 cut(s) 971
BmgT120I GGNCC 3 cut(s) 335, 918, 1232
BmiI GGNNCC 3 cut(s) 165, 229, 919
BmrFI CCNGG 1 cut(s) 1206
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 766
BmtI GCTAGC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 620, 652
Bpu10I CCTNAGC 1 cut(s) 1248
Bpu1102I GCTNAGC 1 cut(s) 1128
BpuMI CCSGG 1 cut(s) 1206
BsaI GGTCTC 1 cut(s) 1192
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 1139
Bse1I ACTGG 4 cut(s) 337, 376, 584, 589
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 2 cut(s) 522, 1111
BseLI CCNNNNNNNGG 1 cut(s) 1139
BseMII CTCAG 6 cut(s) 171, 353, 618, 894, 1119, 1239
BseNI ACTGG 4 cut(s) 337, 376, 584, 589
BseRI GAGGAG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 712
BseYI CCCAGC 1 cut(s) 1089
Bsh1285I CGRYCG 1 cut(s) 1009
BshFI GGCC 1 cut(s) 1234
BshNI GGYRCC 2 cut(s) 163, 227
BsiEI CGRYCG 1 cut(s) 1009
BsiHKAI GWGCWC 4 cut(s) 127, 223, 712, 805
BsiHKCI CYCGRG 1 cut(s) 1223
BsiSI CCGG 3 cut(s) 120, 231, 1205
BslFI GGGAC 2 cut(s) 931, 1106
BslI CCNNNNNNNGG 1 cut(s) 1139
BsmAI GTCTC 6 cut(s) 348, 360, 899, 924, 974, 1192
BsmFI GGGAC 2 cut(s) 931, 1106
BsnI GGCC 1 cut(s) 1234
Bso31I GGTCTC 1 cut(s) 1192
BsoBI CYCGRG 1 cut(s) 1223
Bsp1286I GDGCHC 4 cut(s) 127, 223, 712, 805
Bsp143I GATC 5 cut(s) 112, 205, 527, 872, 1182
Bsp1720I GCTNAGC 1 cut(s) 1128
BspACI CCGC 3 cut(s) 14, 24, 175
BspANI GGCC 1 cut(s) 1234
BspCNI CTCAG 6 cut(s) 172, 352, 619, 895, 1120, 1240
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 3 cut(s) 165, 229, 919
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 880, 1177
BspT107I GGYRCC 2 cut(s) 163, 227
BspTNI GGTCTC 1 cut(s) 1192
BsrBI CCGCTC 1 cut(s) 177
BsrI ACTGG 4 cut(s) 337, 376, 584, 589
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 5 cut(s) 112, 205, 527, 872, 1182
BssSI CACGAG 2 cut(s) 345, 1191
BssT1I CCWWGG 1 cut(s) 323
Bst2BI CACGAG 2 cut(s) 345, 1191
Bst4CI ACNGT 3 cut(s) 227, 1010, 1173
Bst6I CTCTTC 3 cut(s) 39, 862, 936
BstC8I GCNNGC 3 cut(s) 19, 433, 720
BstDEI CTNAG 8 cut(s) 96, 180, 291, 339, 627, 903, 1128, 1248
BstF5I GGATG 2 cut(s) 522, 1111
BstHHI GCGC 2 cut(s) 71, 90
BstKTI GATC 5 cut(s) 115, 208, 530, 875, 1185
BstMAI GTCTC 6 cut(s) 348, 360, 899, 924, 974, 1192
BstMBI GATC 5 cut(s) 112, 205, 527, 872, 1182
BstMCI CGRYCG 1 cut(s) 1009
BstMWI GCNNNNNNNGC 2 cut(s) 23, 227
BstNSI RCATGY 1 cut(s) 992
BstSCI CCNGG 1 cut(s) 1204
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 712
BstX2I RGATCY 1 cut(s) 872
BstYI RGATCY 1 cut(s) 872
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 1 cut(s) 1234
BtrI CACGTC 1 cut(s) 971
BtsCI GGATG 2 cut(s) 522, 1111
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 261, 369, 961
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 3 cut(s) 19, 433, 720
CaiI CAGNNNCTG 1 cut(s) 734
CciI TCATGA 1 cut(s) 532
CfoI GCGC 2 cut(s) 71, 90
Cfr13I GGNCC 3 cut(s) 335, 918, 1232
Csp6I GTAC 5 cut(s) 318, 751, 772, 1063, 1074
CspCI CAANNNNNGTGG 2 cut(s) 659, 694
CviAII CATG 6 cut(s) 80, 476, 533, 834, 984, 989
CviQI GTAC 5 cut(s) 318, 751, 772, 1063, 1074
DdeI CTNAG 8 cut(s) 96, 180, 291, 339, 627, 903, 1128, 1248
DpnI GATC 5 cut(s) 114, 207, 529, 874, 1184
DpnII GATC 5 cut(s) 112, 205, 527, 872, 1182
DriI GACNNNNNGTC 1 cut(s) 1012
Eam1104I CTCTTC 3 cut(s) 39, 862, 936
Eam1105I GACNNNNNGTC 1 cut(s) 1012
EarI CTCTTC 3 cut(s) 39, 862, 936
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 1192
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 2 cut(s) 335, 918
Eco53kI GAGCTC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 1223
EcoICRI GAGCTC 1 cut(s) 125
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 6 cut(s) 83, 479, 536, 837, 987, 992
FalI AAGNNNNNCTT 2 cut(s) 648, 680
FaqI GGGAC 2 cut(s) 931, 1106
FatI CATG 6 cut(s) 79, 475, 532, 833, 983, 988
FbaI TGATCA 2 cut(s) 112, 205
FblI GTMKAC 2 cut(s) 817, 1212
Fnu4HI GCNGC 2 cut(s) 15, 175
FokI GGATG 2 cut(s) 529, 1118
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 15, 175
FspBI CTAG 2 cut(s) 18, 689
GlaI GCGC 2 cut(s) 70, 89
GluI GCNGC 2 cut(s) 15, 175
GsaI CCCAGC 1 cut(s) 1093
HaeIII GGCC 1 cut(s) 1234
HapII CCGG 3 cut(s) 120, 231, 1205
HhaI GCGC 2 cut(s) 71, 90
Hin1II CATG 6 cut(s) 83, 479, 536, 837, 987, 992
Hin6I GCGC 2 cut(s) 69, 88
HinP1I GCGC 2 cut(s) 69, 88
HinfI GANTC 6 cut(s) 57, 138, 169, 234, 635, 1163
HpaII CCGG 3 cut(s) 120, 231, 1205
HphI GGTGA 5 cut(s) 122, 133, 644, 987, 1172
Hpy166II GTNNAC 7 cut(s) 473, 710, 789, 818, 968, 1057, 1213
Hpy188I TCNGA 7 cut(s) 53, 129, 181, 190, 210, 547, 628
Hpy188III TCNNGA 8 cut(s) 38, 279, 347, 533, 671, 729, 1017, 1247
Hpy8I GTNNAC 7 cut(s) 473, 710, 789, 818, 968, 1057, 1213
Hpy99I CGWCG 2 cut(s) 57, 133
HpyAV CCTTC 1 cut(s) 674
HpyCH4III ACNGT 3 cut(s) 227, 1010, 1173
HpyCH4IV ACGT 3 cut(s) 560, 970, 1022
HpyCH4V TGCA 2 cut(s) 254, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 227
HpyF3I CTNAG 8 cut(s) 96, 180, 291, 339, 627, 903, 1128, 1248
HpySE526I ACGT 3 cut(s) 560, 970, 1022
Hsp92II CATG 6 cut(s) 83, 479, 536, 837, 987, 992
HspAI GCGC 2 cut(s) 69, 88
Ksp22I TGATCA 2 cut(s) 112, 205
Kzo9I GATC 5 cut(s) 112, 205, 527, 872, 1182
LmnI GCTCC 5 cut(s) 26, 122, 130, 800, 853
LweI GCATC 1 cut(s) 766
MaeI CTAG 2 cut(s) 18, 689
MaeII ACGT 3 cut(s) 560, 970, 1022
MaeIII GTNAC 4 cut(s) 74, 494, 575, 632
MalI GATC 5 cut(s) 114, 207, 529, 874, 1184
MbiI CCGCTC 1 cut(s) 177
MboI GATC 5 cut(s) 112, 205, 527, 872, 1182
MboII GAAGA 9 cut(s) 26, 147, 223, 237, 455, 534, 879, 953, 1121
MflI RGATCY 1 cut(s) 872
MhlI GDGCHC 4 cut(s) 127, 223, 712, 805
MluCI AATT 3 cut(s) 83, 622, 947
MlyI GAGTC 1 cut(s) 629
MmeI TCCRAC 3 cut(s) 76, 152, 1210
MroXI GAANNNNTTC 2 cut(s) 663, 950
MseI TTAA 1 cut(s) 822
MslI CAYNNNNRTG 4 cut(s) 672, 810, 861, 1100
MspI CCGG 3 cut(s) 120, 231, 1205
MspR9I CCNGG 1 cut(s) 1206
MwoI GCNNNNNNNGC 2 cut(s) 23, 227
NciI CCSGG 1 cut(s) 1206
NdeII GATC 5 cut(s) 112, 205, 527, 872, 1182
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 6 cut(s) 83, 479, 536, 837, 987, 992
NlaIV GGNNCC 3 cut(s) 165, 229, 919
NmuCI GTSAC 2 cut(s) 575, 632
NspI RCATGY 1 cut(s) 992
PaeR7I CTCGAG 1 cut(s) 1223
PagI TCATGA 1 cut(s) 532
PaqCI CACCTGC 1 cut(s) 152
PdmI GAANNNNTTC 2 cut(s) 663, 950
PfeI GAWTC 5 cut(s) 57, 138, 169, 234, 1163
PflMI CCANNNNNTGG 1 cut(s) 1139
PkrI GCNGC 2 cut(s) 16, 176
PleI GAGTC 1 cut(s) 629
PpsI GAGTC 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 1089
PspN4I GGNNCC 3 cut(s) 165, 229, 919
PspPI GGNCC 3 cut(s) 335, 918, 1232
PspXI VCTCGAGB 1 cut(s) 1223
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 1 cut(s) 872
RsaI GTAC 5 cut(s) 319, 752, 773, 1064, 1075
RsaNI GTAC 5 cut(s) 318, 751, 772, 1063, 1074
RseI CAYNNNNRTG 4 cut(s) 672, 810, 861, 1100
SacI GAGCTC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 2 cut(s) 15, 175
Sau3AI GATC 5 cut(s) 112, 205, 527, 872, 1182
Sau96I GGNCC 3 cut(s) 335, 918, 1232
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 1 cut(s) 1206
SduI GDGCHC 4 cut(s) 127, 223, 712, 805
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 1 cut(s) 252
Sfr274I CTCGAG 1 cut(s) 1223
SinI GGWCC 2 cut(s) 335, 918
SlaI CTCGAG 1 cut(s) 1223
SmiMI CAYNNNNRTG 4 cut(s) 672, 810, 861, 1100
SmlI CTYRAG 1 cut(s) 1223
SmoI CTYRAG 1 cut(s) 1223
Sse9I AATT 3 cut(s) 83, 622, 947
SsiI CCGC 3 cut(s) 14, 24, 175
SspMI CTAG 2 cut(s) 18, 689
SstI GAGCTC 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 1204
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 3 cut(s) 227, 1010, 1173
TaiI ACGT 3 cut(s) 563, 973, 1025
TaqI TCGA 5 cut(s) 39, 280, 526, 1181, 1224
TasI AATT 3 cut(s) 83, 622, 947
TatI WGTACW 1 cut(s) 317
TauI GCSGC 2 cut(s) 17, 177
TfiI GAWTC 5 cut(s) 57, 138, 169, 234, 1163
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 3 cut(s) 261, 376, 961
TseFI GTSAC 2 cut(s) 575, 632
Tsp45I GTSAC 2 cut(s) 575, 632
TspDTI ATGAA 6 cut(s) 96, 399, 441, 456, 656, 1122
TspGWI ACGGA 2 cut(s) 1062, 1080
TspRI CASTG 3 cut(s) 261, 376, 961
Van91I CCANNNNNTGG 1 cut(s) 1139
VneI GTGCAC 1 cut(s) 708
VpaK11BI GGWCC 2 cut(s) 335, 918
XapI RAATTY 2 cut(s) 622, 947
XceI RCATGY 1 cut(s) 992
XcmI CCANNNNNNNNNTGG 1 cut(s) 1140
XhoI CTCGAG 1 cut(s) 1223
XmiI GTMKAC 2 cut(s) 817, 1212
XmnI GAANNNNTTC 2 cut(s) 663, 950
XspI CTAG 2 cut(s) 18, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.