RLG00000011007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005878
Physical Location & Seq
Reverse (-)
5976928 .. 5980974
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011007

Sequence Viewer

Length: 1389 bp
ATGGCGGCGGCCACCACCACCACTAGAGGCTTCGCTACTCACCCCAGCCACCTCTCCTTCCTCCATCATCTACCGCATCCGCACCGGAACAATGCTCACACCGCCGACGTGGACGACCTGAGCAAGCGGCGGAGGCTCACCATCGGCGGCAACCGACTCGGAGTGAGTCGAATCAGTTGCTGCTGTTCCGACTCGGCGGTTCCGATTCGGAGTAGCTCCCCCGCCGAGAAGAGGAACAAGTGCGATGAGCGGCGGTTCGATTCCAACAAGAGGCCTCCTCACAGAGCTGGACTCAAAGCTGCTGCTGCATTGCCCTTTGCTTCTGAGCAATCTCAATTTGCCTCCAAACAAAACAGCAAGGTGTACCCTCGCCGGCGCCCTCGCTGTACTCCGGGGAATACTGGTCCACAATCTCGTGATACTCCGCCGAAAAGAGATACTGGTATTGCCAGCGAGAAGGAATGGGGTATTAGCTTGTTAAACGAACATGTGAAGGAATCCGGCACTAATGAAGATGGAAGTACTTGGTACCGAGAAAGCGGGGAGGAGCTGGGGAACACTGGGTACAGATGTAGGTGGACAAGGATGGGTGGTGCTTCTCATGACTCCTCTTCAGAGTGGAGAGAAGAGTGGTGGGAGAAAAGTGACTGGACTGGATACAAAGAGCTAGGTGTGGAGAAATCTGGTAGAAATGCCGAAGGGGATTCATGGTGGGAAACGTGGCAAGAAGTTCTTCATCAAGATGAATGGAGTAACCTAGCAAGGATTGAGAGAAGTGCACAGAAACGAGCAAAATCAGGCACTGAAAATGCTGGATGGTCTGAGAAATGGTGGGAGAAATATGATGCCAAAGGCTGGACTGAGAAAGGAGCACACAAATGGGGTAGACTTAATGAACAGTCTTGGTGGGAGAAGTGGGGAGAGCATTATGACGGAAGGGGATCTGTTCTCAAATGGACAGATAAATGGGCAGAGACTGAACTTGGAACCAAATGGGGAGACAAGTGGGAAGAGAAGTTCTTTGAGGGTATAGGTTCACGACAAGGGGAAACATGGCATGTAACTTCCAATGATGAACGTTGGTCAAGGACATGGGGAGAAGAACACATTGGAAATGGTAAAGTGCACAAATATGGGAAGAGCACAACAGGTGAAAGCTGGGATATTGTTGTGGATGAGGAGACCTATTACGAGGCTGTGCCGCATTACGGATGGGCAGATGTTGTCGGCGATTCGACCCAGTTACTATCAATTGAACCTCGTGAAAAGCCGCCTGAGGTCTACCCAAACTTTGACTTTACGAGATCACCACCTGCAATGGGTACACCGCTTCCAGAGAATGAACCACCACCACCACCTTCAGAGGATGAACCACCTCCAGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

463

Amino Acids

52.87

Weight (kDa)

5.99

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1321
Acc36I ACCTGC 1 cut(s) 1321
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 375, 528
AccB7I CCANNNNNTGG 1 cut(s) 855
AccBSI CCGCTC 1 cut(s) 250
AccI GTMKAC 2 cut(s) 886, 1281
AclI AACGTT 1 cut(s) 1078
AclWI GGATC 1 cut(s) 949
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 597, 1344
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 6 cut(s) 365, 388, 523, 530, 566, 1324
AfiI CCNNNNNNNGG 5 cut(s) 231, 270, 855, 1208, 1319
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 1 cut(s) 1256
AjiI CACGTC 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 1092, 1124
AloI GAACNNNNNNTCC 2 cut(s) 1001, 1033
AluBI AGCT 7 cut(s) 216, 287, 299, 474, 550, 667, 1158
AluI AGCT 7 cut(s) 216, 287, 299, 474, 550, 667, 1158
Alw21I GWGCWC 4 cut(s) 781, 874, 1128, 1145
Alw26I GTCTC 3 cut(s) 968, 993, 1175
Alw44I GTGCAC 2 cut(s) 777, 1124
AlwI GGATC 1 cut(s) 949
AlwNI CAGNNNCTG 3 cut(s) 180, 803, 977
AoxI GGCC 2 cut(s) 9, 272
ApaLI GTGCAC 2 cut(s) 777, 1124
ApeKI GCWGC 4 cut(s) 180, 299, 302, 305
Asp700I GAANNNNTTC 1 cut(s) 732
Asp718I GGTACC 1 cut(s) 528
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 404
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 4 cut(s) 32, 130, 1163, 1299
AvaII GGWCC 1 cut(s) 404
AxyI CCTNAGG 1 cut(s) 1275
BaeGI GKGCMC 2 cut(s) 781, 1128
BaeI ACNNNNGTAYC 2 cut(s) 556, 589
BanI GGYRCC 2 cut(s) 375, 528
BauI CACGAG 2 cut(s) 414, 1260
Bbv12I GWGCWC 4 cut(s) 781, 874, 1128, 1145
BbvI GCAGC 4 cut(s) 167, 286, 289, 292
BccI CCATC 6 cut(s) 72, 149, 509, 580, 810, 1206
BcgI CGANNNNNNTGC 4 cut(s) 139, 159, 173, 193
BciVI GTATCC 1 cut(s) 650
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 3 cut(s) 968, 993, 1175
BfaI CTAG 3 cut(s) 24, 668, 758
BfoI RGCGCY 1 cut(s) 379
BfuAI ACCTGC 1 cut(s) 1321
BfuI GTATCC 1 cut(s) 650
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 404
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 4 cut(s) 201, 377, 530, 988
BmrFI CCNGG 1 cut(s) 393
BmrI ACTGGG 2 cut(s) 570, 1234
BmsI GCATC 2 cut(s) 85, 835
BmuI ACTGGG 2 cut(s) 570, 1234
BplI GAGNNNNNCTC 4 cut(s) 262, 294, 276, 308
BpmI CTGGAG 1 cut(s) 1362
Bpu10I CCTNAGC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 1175
BsaJI CCNNGG 1 cut(s) 392
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 5 cut(s) 231, 270, 855, 1208, 1319
Bse118I RCCGGY 1 cut(s) 372
Bse1I ACTGG 6 cut(s) 406, 445, 565, 653, 658, 1240
Bse21I CCTNAGG 1 cut(s) 1275
Bse3DI GCAATG 2 cut(s) 308, 1323
BseDI CCNNGG 1 cut(s) 392
BseGI GGATG 6 cut(s) 76, 591, 821, 1180, 1217, 1372
BseLI CCNNNNNNNGG 5 cut(s) 231, 270, 855, 1208, 1319
BseMI GCAATG 2 cut(s) 308, 1323
BseMII CTCAG 5 cut(s) 110, 315, 813, 852, 1266
BseNI ACTGG 6 cut(s) 406, 445, 565, 653, 658, 1240
BseRI GAGGAG 4 cut(s) 267, 560, 598, 1193
BseSI GKGCMC 2 cut(s) 781, 1128
BseXI GCAGC 4 cut(s) 167, 286, 289, 292
BseYI CCCAGC 3 cut(s) 44, 550, 1158
BshFI GGCC 2 cut(s) 11, 274
BshNI GGYRCC 2 cut(s) 375, 528
BsiHKAI GWGCWC 4 cut(s) 781, 874, 1128, 1145
BsiSI CCGG 4 cut(s) 85, 373, 392, 501
BslI CCNNNNNNNGG 5 cut(s) 231, 270, 855, 1208, 1319
BsmAI GTCTC 3 cut(s) 968, 993, 1175
BsnI GGCC 2 cut(s) 11, 274
Bso31I GGTCTC 1 cut(s) 1175
Bsp1286I GDGCHC 4 cut(s) 781, 874, 1128, 1145
Bsp143I GATC 2 cut(s) 941, 1304
BspANI GGCC 2 cut(s) 11, 274
BspCNI CTCAG 5 cut(s) 111, 316, 814, 853, 1267
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 4 cut(s) 201, 377, 530, 988
BspMI ACCTGC 1 cut(s) 1321
BspPI GGATC 1 cut(s) 949
BspQI GCTCTTC 1 cut(s) 1133
BspT107I GGYRCC 2 cut(s) 375, 528
BspTNI GGTCTC 1 cut(s) 1175
BsrBI CCGCTC 1 cut(s) 250
BsrDI GCAATG 2 cut(s) 308, 1323
BsrFI RCCGGY 1 cut(s) 372
BsrI ACTGG 6 cut(s) 406, 445, 565, 653, 658, 1240
BssAI RCCGGY 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 2 cut(s) 941, 1304
BssNI GRCGYC 1 cut(s) 376
BssSI CACGAG 2 cut(s) 414, 1260
Bst2BI CACGAG 2 cut(s) 414, 1260
Bst4CI ACNGT 1 cut(s) 900
Bst6I CTCTTC 5 cut(s) 224, 616, 621, 1005, 1133
BstACI GRCGYC 1 cut(s) 376
BstC8I GCNNGC 3 cut(s) 125, 374, 451
BstDEI CTNAG 5 cut(s) 119, 324, 822, 861, 1275
BstF5I GGATG 6 cut(s) 76, 591, 821, 1180, 1217, 1372
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 2 cut(s) 944, 1307
BstMAI GTCTC 3 cut(s) 968, 993, 1175
BstMBI GATC 2 cut(s) 941, 1304
BstMWI GCNNNNNNNGC 3 cut(s) 101, 133, 305
BstNSI RCATGY 2 cut(s) 491, 1061
BstSCI CCNGG 1 cut(s) 391
BstSLI GKGCMC 2 cut(s) 781, 1128
BstV1I GCAGC 4 cut(s) 167, 286, 289, 292
BstX2I RGATCY 1 cut(s) 941
BstYI RGATCY 1 cut(s) 941
Bsu36I CCTNAGG 1 cut(s) 1275
BsuI GTATCC 1 cut(s) 650
BsuRI GGCC 2 cut(s) 11, 274
BtgZI GCGATG 1 cut(s) 258
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 6 cut(s) 76, 591, 821, 1180, 1217, 1372
BtsIMutI CAGTG 2 cut(s) 558, 801
BveI ACCTGC 1 cut(s) 1321
Cac8I GCNNGC 3 cut(s) 125, 374, 451
CaiI CAGNNNCTG 3 cut(s) 180, 803, 977
CciI TCATGA 1 cut(s) 601
CfoI GCGC 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 404
Csp6I GTAC 6 cut(s) 364, 387, 522, 529, 565, 1323
CviAII CATG 6 cut(s) 488, 602, 708, 1053, 1058, 1092
CviQI GTAC 6 cut(s) 364, 387, 522, 529, 565, 1323
DdeI CTNAG 5 cut(s) 119, 324, 822, 861, 1275
DinI GGCGCC 1 cut(s) 377
DpnI GATC 2 cut(s) 943, 1306
DpnII GATC 2 cut(s) 941, 1304
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 5 cut(s) 224, 616, 621, 1005, 1133
EarI CTCTTC 5 cut(s) 224, 616, 621, 1005, 1133
EciI GGCGGA 2 cut(s) 145, 414
Eco147I AGGCCT 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 1175
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 2 cut(s) 597, 1344
Eco81I CCTNAGG 1 cut(s) 1275
EgeI GGCGCC 1 cut(s) 377
EheI GGCGCC 1 cut(s) 377
FaeI CATG 6 cut(s) 491, 605, 711, 1056, 1061, 1095
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FatI CATG 6 cut(s) 487, 601, 707, 1052, 1057, 1091
FauI CCCGC 2 cut(s) 229, 533
FblI GTMKAC 2 cut(s) 886, 1281
FokI GGATG 6 cut(s) 63, 598, 828, 1187, 1224, 1379
FspBI CTAG 3 cut(s) 24, 668, 758
GlaI GCGC 1 cut(s) 377
GsaI CCCAGC 3 cut(s) 48, 554, 1162
GsuI CTGGAG 1 cut(s) 1362
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 2 cut(s) 11, 274
HapII CCGG 4 cut(s) 85, 373, 392, 501
HhaI GCGC 1 cut(s) 378
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 6 cut(s) 491, 605, 711, 1056, 1061, 1095
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HpaII CCGG 4 cut(s) 85, 373, 392, 501
HphI GGTGA 4 cut(s) 32, 130, 1163, 1299
Hpy188I TCNGA 8 cut(s) 161, 190, 204, 210, 325, 616, 823, 1363
Hpy188III TCNNGA 7 cut(s) 416, 602, 740, 1038, 1262, 1334, 1379
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 6 cut(s) 67, 451, 487, 692, 930, 1368
HpyCH4III ACNGT 1 cut(s) 900
HpyCH4IV ACGT 3 cut(s) 108, 719, 1078
HpyCH4V TGCA 4 cut(s) 308, 779, 1126, 1316
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 133, 305
HpyF3I CTNAG 5 cut(s) 119, 324, 822, 861, 1275
HpySE526I ACGT 3 cut(s) 108, 719, 1078
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 6 cut(s) 491, 605, 711, 1056, 1061, 1095
HspAI GCGC 1 cut(s) 376
KasI GGCGCC 1 cut(s) 375
KpnI GGTACC 1 cut(s) 532
KroI GCCGGC 1 cut(s) 372
KroNI GCCGGC 1 cut(s) 374
Kzo9I GATC 2 cut(s) 941, 1304
LguI GCTCTTC 1 cut(s) 1133
LmnI GCTCC 3 cut(s) 221, 547, 869
Lsp1109I GCAGC 4 cut(s) 167, 286, 289, 292
LweI GCATC 2 cut(s) 85, 835
MaeI CTAG 3 cut(s) 24, 668, 758
MaeII ACGT 3 cut(s) 108, 719, 1078
MaeIII GTNAC 4 cut(s) 644, 752, 1060, 1242
MalI GATC 2 cut(s) 943, 1306
MbiI CCGCTC 1 cut(s) 250
MboI GATC 2 cut(s) 941, 1304
MboII GAAGA 8 cut(s) 241, 524, 603, 638, 725, 1022, 1112, 1150
MfeI CAATTG 1 cut(s) 1251
MflI RGATCY 1 cut(s) 941
MhlI GDGCHC 4 cut(s) 781, 874, 1128, 1145
MluCI AATT 2 cut(s) 335, 1251
Mly113I GGCGCC 1 cut(s) 376
MlyI GAGTC 5 cut(s) 150, 175, 185, 285, 599
MmeI TCCRAC 2 cut(s) 213, 288
MreI CGCCGGCG 1 cut(s) 372
MroNI GCCGGC 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 732
MseI TTAA 3 cut(s) 479, 891, 1387
MslI CAYNNNNRTG 3 cut(s) 741, 877, 1131
MspI CCGG 4 cut(s) 85, 373, 392, 501
MspR9I CCNGG 1 cut(s) 393
MunI CAATTG 1 cut(s) 1251
MwoI GCNNNNNNNGC 3 cut(s) 101, 133, 305
NaeI GCCGGC 1 cut(s) 374
NarI GGCGCC 1 cut(s) 376
NciI CCSGG 1 cut(s) 393
NdeII GATC 2 cut(s) 941, 1304
NgoMIV GCCGGC 1 cut(s) 372
NlaIII CATG 6 cut(s) 491, 605, 711, 1056, 1061, 1095
NlaIV GGNNCC 4 cut(s) 201, 377, 530, 988
NmeAIII GCCGAG 2 cut(s) 173, 250
NmuCI GTSAC 1 cut(s) 644
NspI RCATGY 2 cut(s) 491, 1061
PagI TCATGA 1 cut(s) 601
PaqCI CACCTGC 1 cut(s) 1321
PceI AGGCCT 1 cut(s) 274
PciI ACATGT 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 1133
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PdiI GCCGGC 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 6 cut(s) 171, 205, 260, 497, 704, 1232
PflMI CCANNNNNTGG 1 cut(s) 855
PleI GAGTC 5 cut(s) 150, 174, 185, 285, 599
PluTI GGCGCC 1 cut(s) 379
PpsI GAGTC 5 cut(s) 150, 174, 185, 285, 599
PscI ACATGT 1 cut(s) 487
Psp1406I AACGTT 1 cut(s) 1078
PspFI CCCAGC 3 cut(s) 44, 550, 1158
PspN4I GGNNCC 4 cut(s) 201, 377, 530, 988
PspPI GGNCC 1 cut(s) 404
PsrI GAACNNNNNNTAC 2 cut(s) 548, 580
PstNI CAGNNNCTG 3 cut(s) 180, 803, 977
PsuI RGATCY 1 cut(s) 941
RsaI GTAC 6 cut(s) 365, 388, 523, 530, 566, 1324
RsaNI GTAC 6 cut(s) 364, 387, 522, 529, 565, 1323
RseI CAYNNNNRTG 3 cut(s) 741, 877, 1131
SapI GCTCTTC 1 cut(s) 1133
SaqAI TTAA 3 cut(s) 479, 891, 1387
Sau3AI GATC 2 cut(s) 941, 1304
Sau96I GGNCC 1 cut(s) 404
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 5 cut(s) 150, 175, 185, 285, 599
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 4 cut(s) 781, 874, 1128, 1145
SfaNI GCATC 2 cut(s) 85, 835
SfoI GGCGCC 1 cut(s) 377
SgrAI CRCCGGYG 1 cut(s) 372
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 3 cut(s) 741, 877, 1131
Sse9I AATT 2 cut(s) 335, 1251
SseBI AGGCCT 1 cut(s) 274
SspDI GGCGCC 1 cut(s) 375
SspMI CTAG 3 cut(s) 24, 668, 758
StuI AGGCCT 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 900
TaiI ACGT 3 cut(s) 111, 722, 1081
TaqI TCGA 3 cut(s) 169, 258, 1235
TasI AATT 2 cut(s) 335, 1251
TatI WGTACW 2 cut(s) 386, 521
TauI GCSGC 7 cut(s) 8, 11, 130, 150, 253, 1204, 1273
TfiI GAWTC 6 cut(s) 171, 205, 260, 497, 704, 1232
Tru1I TTAA 3 cut(s) 479, 891, 1387
Tru9I TTAA 3 cut(s) 479, 891, 1387
TscAI CASTG 2 cut(s) 565, 808
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 4 cut(s) 180, 299, 302, 305
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 8 cut(s) 525, 696, 725, 759, 909, 1089, 1356, 1383
TspGWI ACGGA 2 cut(s) 948, 1224
TspRI CASTG 2 cut(s) 565, 808
Van91I CCANNNNNTGG 1 cut(s) 855
VneI GTGCAC 2 cut(s) 777, 1124
VpaK11BI GGWCC 1 cut(s) 404
XceI RCATGY 2 cut(s) 491, 1061
XmiI GTMKAC 2 cut(s) 886, 1281
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 3 cut(s) 24, 668, 758
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.