MD15G1002600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
148494 .. 152031
3538 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1002600.v1.1.491

Sequence Viewer

Length: 1359 bp
ATGGCGGCCACTTCCAGAGGCTTCGCTTCTCCGCCTGATTTCAAGCTCACCCGCCTCCGCCTCGCTTTCGATCCCCACCCCCTCCCTTCTACTGCTACTAATGCCGCCCGCCTGCGGGATATCAGAAAGCGGAGGAGAAGACTTAGCCTTCCCATGGCTGACCCACCCGCAGTCACTCGAATCACTTGCTGCTGCTCCGACTCCGTCGTTCCGATCCGCTCTGGAAAGAGCCTCGACAAGGCGGAAGAGTGGCGCTTCGATTCCAAGAAAAGGGCTCAGAGAGCTGCTGGAGTCCCAGTCTCCGCCGCATTGCCCTTCTTTGCTTCGTCTTCCTCTTCTTCTCCTGCTCAATCTCGCTTCCTGTCCAAACAAGAGAAATACTACCCTCGCTGTACCCCAAGAAACTCTGGTCCACAATCTCGCGACAGTCCTCCGAAAAGAGATACTGGCATTGCCAATGAGAAGGAGTGGGGCATCAGCTTGTTAAACGAAAATGTAAATGAGTCTGGCACCAATGAAGATGGCACTACTTGGTACCGCGAAAGTGGCGAGGACCTTGGCAACAATGGCTACAGATGTAGGTGGACAAGGATGGGTGGTACCTCCCACGACGCTTCTTCACAATGGAAAGAAACGTGGTGGGAGAAAAGTGACTGGACTGGATACAAAGAGCTAGGTGTGGAGAAATCTGGTAGAAATGCTGAAGGGGATTCGTGGTGGGAAACATGGCAAGAAGTTATTCATCAAGATGAATGGAGTAATTTAGCAAGGATTGAGAGAAGTGCACAGAAACAAGCAAAATCAGGCTCGGAAAATGCTGGATGGTATGAGAAATGGTGGGAGAAATATGATGCTAAAGGCTGGACCGAGAAAGGAGCACACAAATATGGTAGACTTAATGAGCAGTCTTGGTGGGAGAAGTGGGGAGAGCATTATGATGGAAGGGGATCTGTTCTCAAATGGACTGATAAATGGGCTGAGACTGAACTTGGAACCAAATGGGGAGACAAGTGGGAAGAGAAGTTCTTTGCTGGAATAGGTTCGCGACAAGGGGAGACATGGCATGTATCTCCAAGTGGTGAACGTTGGTCAAGGACATGGGGAGAAGAGCACTTTGGAAATGGTAAGGTGCACAAATATGGGAAAAGCACGACAGGGGAAAGCTGGGATATTGTTGTGGATGAGGAGACCTATTACGAGGCTGAGCCGCATTACGGGTGGGCAGATGTCGTTGGTGACTCTAGCCAATTGCTGTCAATTAAACCTCGAGAAAGGCCACCTGGCGTCTACCCTGCCCTTGATTTTGGATCATCGTCACCTTCAGTTGATGAACCACCAGAAGAATTTTCTCCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

453

Amino Acids

51.58

Weight (kDa)

6.37

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 534, 599
AccB1I GGYRCC 3 cut(s) 509, 534, 599
AccBSI CCGCTC 1 cut(s) 219
AccI GTMKAC 2 cut(s) 892, 1287
AccII CGCG 3 cut(s) 423, 540, 1045
AclI AACGTT 1 cut(s) 1084
AclWI GGATC 4 cut(s) 65, 208, 955, 1315
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 1343
AcuI CTGAAG 2 cut(s) 723, 1305
AcyI GRCGYC 1 cut(s) 1284
AfaI GTAC 3 cut(s) 394, 536, 601
AfiI CCNNNNNNNGG 6 cut(s) 114, 115, 154, 238, 270, 1214
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 1279
AjuI GAANNNNNNNTTGG 2 cut(s) 1098, 1130
AloI GAACNNNNNNTCC 2 cut(s) 1007, 1039
AluBI AGCT 5 cut(s) 46, 284, 480, 673, 1164
AluI AGCT 5 cut(s) 46, 284, 480, 673, 1164
Alw21I GWGCWC 4 cut(s) 787, 880, 1113, 1134
Alw26I GTCTC 5 cut(s) 304, 974, 999, 1049, 1181
Alw44I GTGCAC 2 cut(s) 783, 1130
AlwI GGATC 4 cut(s) 65, 208, 955, 1315
Ama87I CYCGRG 1 cut(s) 1266
AoxI GGCC 2 cut(s) 6, 1274
ApaLI GTGCAC 2 cut(s) 783, 1130
ApeKI GCWGC 3 cut(s) 189, 192, 284
ApoI RAATTY 1 cut(s) 1343
Asp700I GAANNNNTTC 2 cut(s) 738, 1039
Asp718I GGTACC 2 cut(s) 534, 599
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 3 cut(s) 410, 553, 864
AsuHPI GGTGA 4 cut(s) 40, 1091, 1247, 1308
AvaI CYCGRG 1 cut(s) 1266
AvaII GGWCC 3 cut(s) 410, 553, 864
BaeGI GKGCMC 2 cut(s) 787, 1134
BanI GGYRCC 3 cut(s) 509, 534, 599
BanII GRGCYC 1 cut(s) 277
BbsI GAAGAC 2 cut(s) 145, 321
Bbv12I GWGCWC 4 cut(s) 787, 880, 1113, 1134
BbvI GCAGC 3 cut(s) 176, 179, 271
BccI CCATC 4 cut(s) 515, 586, 816, 932
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 1 cut(s) 1281
BciVI GTATCC 1 cut(s) 656
BcoDI GTCTC 5 cut(s) 304, 974, 999, 1049, 1181
BfaI CTAG 2 cut(s) 674, 1242
BfmI CTRYAG 1 cut(s) 571
BfoI RGCGCY 1 cut(s) 256
BfuI GTATCC 1 cut(s) 656
BisI GCNGC 7 cut(s) 6, 105, 190, 193, 285, 306, 1208
BlpI GCTNAGC 1 cut(s) 1203
BlsI GCNGC 7 cut(s) 7, 106, 191, 194, 286, 307, 1209
Bme1390I CCNGG 1 cut(s) 1281
Bme18I GGWCC 3 cut(s) 410, 553, 864
BmeT110I CYCGRG 1 cut(s) 1266
BmgT120I GGNCC 3 cut(s) 410, 553, 864
BmiI GGNNCC 4 cut(s) 511, 536, 601, 994
BmrFI CCNGG 1 cut(s) 1281
BmrI ACTGGG 1 cut(s) 290
BmsI GCATC 2 cut(s) 483, 841
BmuI ACTGGG 1 cut(s) 290
BpiI GAAGAC 2 cut(s) 145, 321
BpmI CTGGAG 1 cut(s) 309
Bpu1102I GCTNAGC 1 cut(s) 1203
BsaHI GRCGYC 1 cut(s) 1284
BsaI GGTCTC 1 cut(s) 1181
BsaJI CCNNGG 2 cut(s) 153, 556
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 6 cut(s) 114, 115, 154, 238, 270, 1214
Bse1I ACTGG 4 cut(s) 296, 451, 659, 664
Bse3DI GCAATG 2 cut(s) 308, 450
BseBI CCWGG 1 cut(s) 1281
BseDI CCNNGG 2 cut(s) 153, 556
BseGI GGATG 3 cut(s) 597, 827, 1186
BseLI CCNNNNNNNGG 6 cut(s) 114, 115, 154, 238, 270, 1214
BseMI GCAATG 2 cut(s) 308, 450
BseMII CTCAG 3 cut(s) 290, 969, 1194
BseNI ACTGG 4 cut(s) 296, 451, 659, 664
BseRI GAGGAG 2 cut(s) 148, 1199
BseSI GKGCMC 2 cut(s) 787, 1134
BseXI GCAGC 3 cut(s) 176, 179, 271
BseYI CCCAGC 1 cut(s) 1164
Bsh1236I CGCG 3 cut(s) 423, 540, 1045
BshFI GGCC 2 cut(s) 8, 1276
BshNI GGYRCC 3 cut(s) 509, 534, 599
BsiHKAI GWGCWC 4 cut(s) 787, 880, 1113, 1134
BsiHKCI CYCGRG 1 cut(s) 1266
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 6 cut(s) 114, 115, 154, 238, 270, 1214
BsmAI GTCTC 5 cut(s) 304, 974, 999, 1049, 1181
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 2 cut(s) 8, 1276
Bso31I GGTCTC 1 cut(s) 1181
BsoBI CYCGRG 1 cut(s) 1266
Bsp1286I GDGCHC 5 cut(s) 277, 787, 880, 1113, 1134
Bsp143I GATC 4 cut(s) 70, 213, 947, 1307
Bsp1720I GCTNAGC 1 cut(s) 1203
Bsp19I CCATGG 1 cut(s) 153
Bsp68I TCGCGA 2 cut(s) 423, 1045
BspANI GGCC 2 cut(s) 8, 1276
BspCNI CTCAG 3 cut(s) 289, 970, 1195
BspFNI CGCG 3 cut(s) 423, 540, 1045
BspLI GGNNCC 4 cut(s) 511, 536, 601, 994
BspPI GGATC 4 cut(s) 65, 208, 955, 1315
BspQI GCTCTTC 1 cut(s) 1101
BspT107I GGYRCC 3 cut(s) 509, 534, 599
BspTNI GGTCTC 1 cut(s) 1181
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 308, 450
BsrI ACTGG 4 cut(s) 296, 451, 659, 664
BssECI CCNNGG 2 cut(s) 153, 556
BssMI GATC 4 cut(s) 70, 213, 947, 1307
BssNI GRCGYC 1 cut(s) 1284
BssT1I CCWWGG 2 cut(s) 153, 556
Bst2UI CCWGG 1 cut(s) 1281
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 4 cut(s) 240, 340, 1011, 1101
BstACI GRCGYC 1 cut(s) 1284
BstC8I GCNNGC 2 cut(s) 109, 113
BstDEI CTNAG 4 cut(s) 143, 276, 978, 1203
BstDSI CCRYGG 1 cut(s) 153
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 3 cut(s) 597, 827, 1186
BstFNI CGCG 3 cut(s) 423, 540, 1045
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 4 cut(s) 73, 216, 950, 1310
BstMAI GTCTC 5 cut(s) 304, 974, 999, 1049, 1181
BstMBI GATC 4 cut(s) 70, 213, 947, 1307
BstMWI GCNNNNNNNGC 4 cut(s) 101, 281, 546, 567
BstNI CCWGG 1 cut(s) 1281
BstNSI RCATGY 1 cut(s) 1067
BstSCI CCNGG 1 cut(s) 1279
BstSFI CTRYAG 1 cut(s) 571
BstSLI GKGCMC 2 cut(s) 787, 1134
BstUI CGCG 3 cut(s) 423, 540, 1045
BstV1I GCAGC 3 cut(s) 176, 179, 271
BstV2I GAAGAC 2 cut(s) 145, 321
BstX2I RGATCY 1 cut(s) 947
BstYI RGATCY 1 cut(s) 947
BsuI GTATCC 1 cut(s) 656
BsuRI GGCC 2 cut(s) 8, 1276
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 3 cut(s) 597, 827, 1186
BtuMI TCGCGA 2 cut(s) 423, 1045
Cac8I GCNNGC 2 cut(s) 109, 113
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 3 cut(s) 410, 553, 864
CseI GACGC 2 cut(s) 620, 1273
Csp6I GTAC 3 cut(s) 393, 535, 600
CviAII CATG 5 cut(s) 154, 726, 1059, 1064, 1098
CviQI GTAC 3 cut(s) 393, 535, 600
DdeI CTNAG 4 cut(s) 143, 276, 978, 1203
DpnI GATC 4 cut(s) 72, 215, 949, 1309
DpnII GATC 4 cut(s) 70, 213, 947, 1307
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 4 cut(s) 240, 340, 1011, 1101
EarI CTCTTC 4 cut(s) 240, 340, 1011, 1101
EciI GGCGGA 4 cut(s) 21, 47, 257, 292
Eco130I CCWWGG 2 cut(s) 153, 556
Eco24I GRGCYC 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 1181
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 3 cut(s) 410, 553, 864
Eco57I CTGAAG 2 cut(s) 723, 1305
Eco88I CYCGRG 1 cut(s) 1266
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 1279
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 153, 556
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 2 cut(s) 153, 556
FaeI CATG 5 cut(s) 157, 729, 1062, 1067, 1101
FaqI GGGAC 1 cut(s) 278
FatI CATG 5 cut(s) 153, 725, 1058, 1063, 1097
FauI CCCGC 4 cut(s) 59, 108, 116, 175
FblI GTMKAC 2 cut(s) 892, 1287
Fnu4HI GCNGC 7 cut(s) 6, 105, 190, 193, 285, 306, 1208
FokI GGATG 3 cut(s) 604, 834, 1193
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 7 cut(s) 6, 105, 190, 193, 285, 306, 1208
FspBI CTAG 2 cut(s) 674, 1242
GlaI GCGC 1 cut(s) 254
GluI GCNGC 7 cut(s) 6, 105, 190, 193, 285, 306, 1208
GsaI CCCAGC 1 cut(s) 1168
GsuI CTGGAG 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 2 cut(s) 8, 1276
HgaI GACGC 2 cut(s) 620, 1273
HhaI GCGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 1284
Hin1II CATG 5 cut(s) 157, 729, 1062, 1067, 1101
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HinfI GANTC 7 cut(s) 180, 200, 260, 291, 503, 710, 1238
HphI GGTGA 4 cut(s) 40, 1091, 1247, 1308
Hpy166II GTNNAC 7 cut(s) 413, 585, 785, 893, 1082, 1132, 1288
Hpy188I TCNGA 6 cut(s) 125, 199, 213, 279, 435, 811
Hpy188III TCNNGA 6 cut(s) 15, 222, 422, 746, 1044, 1268
Hpy8I GTNNAC 7 cut(s) 413, 585, 785, 893, 1082, 1132, 1288
Hpy99I CGWCG 2 cut(s) 209, 614
HpyAV CCTTC 7 cut(s) 96, 158, 325, 457, 698, 936, 1329
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 2 cut(s) 635, 1084
HpyCH4V TGCA 2 cut(s) 785, 1132
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 281, 546, 567
HpyF3I CTNAG 4 cut(s) 143, 276, 978, 1203
HpySE526I ACGT 2 cut(s) 635, 1084
Hsp92I GRCGYC 1 cut(s) 1284
Hsp92II CATG 5 cut(s) 157, 729, 1062, 1067, 1101
HspAI GCGC 1 cut(s) 253
KpnI GGTACC 2 cut(s) 538, 603
Kzo9I GATC 4 cut(s) 70, 213, 947, 1307
LguI GCTCTTC 1 cut(s) 1101
LmnI GCTCC 2 cut(s) 200, 875
Lsp1109I GCAGC 3 cut(s) 176, 179, 271
LweI GCATC 2 cut(s) 483, 841
MaeI CTAG 2 cut(s) 674, 1242
MaeII ACGT 2 cut(s) 635, 1084
MaeIII GTNAC 4 cut(s) 172, 650, 1235, 1314
MalI GATC 4 cut(s) 72, 215, 949, 1309
MbiI CCGCTC 1 cut(s) 219
MboI GATC 4 cut(s) 70, 213, 947, 1307
MfeI CAATTG 1 cut(s) 1247
MflI RGATCY 1 cut(s) 947
MhlI GDGCHC 5 cut(s) 277, 787, 880, 1113, 1134
MluCI AATT 4 cut(s) 760, 1247, 1257, 1343
MlyI GAGTC 4 cut(s) 194, 300, 512, 1232
MmeI TCCRAC 1 cut(s) 222
MroXI GAANNNNTTC 2 cut(s) 738, 1039
MseI TTAA 3 cut(s) 485, 897, 1260
MslI CAYNNNNRTG 4 cut(s) 747, 885, 936, 1137
MspR9I CCNGG 1 cut(s) 1281
MunI CAATTG 1 cut(s) 1247
MvaI CCWGG 1 cut(s) 1281
MvnI CGCG 3 cut(s) 423, 540, 1045
MwoI GCNNNNNNNGC 4 cut(s) 101, 281, 546, 567
NcoI CCATGG 1 cut(s) 153
NdeII GATC 4 cut(s) 70, 213, 947, 1307
NlaIII CATG 5 cut(s) 157, 729, 1062, 1067, 1101
NlaIV GGNNCC 4 cut(s) 511, 536, 601, 994
NmuCI GTSAC 4 cut(s) 172, 650, 1235, 1314
NruI TCGCGA 2 cut(s) 423, 1045
NspI RCATGY 1 cut(s) 1067
PaeR7I CTCGAG 1 cut(s) 1266
PciSI GCTCTTC 1 cut(s) 1101
PdmI GAANNNNTTC 2 cut(s) 738, 1039
PfeI GAWTC 3 cut(s) 180, 260, 710
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 7 cut(s) 7, 106, 191, 194, 286, 307, 1209
PleI GAGTC 4 cut(s) 194, 299, 511, 1232
PpsI GAGTC 4 cut(s) 194, 299, 511, 1232
PpuMI RGGWCCY 1 cut(s) 553
Psp1406I AACGTT 1 cut(s) 1084
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 1279
PspFI CCCAGC 1 cut(s) 1164
PspGI CCWGG 1 cut(s) 1279
PspN4I GGNNCC 4 cut(s) 511, 536, 601, 994
PspPI GGNCC 3 cut(s) 410, 553, 864
PspPPI RGGWCCY 1 cut(s) 553
PsuI RGATCY 1 cut(s) 947
PsyI GACNNNGTC 1 cut(s) 203
RruI TCGCGA 2 cut(s) 423, 1045
RsaI GTAC 3 cut(s) 394, 536, 601
RsaNI GTAC 3 cut(s) 393, 535, 600
RseI CAYNNNNRTG 4 cut(s) 747, 885, 936, 1137
SapI GCTCTTC 1 cut(s) 1101
SaqAI TTAA 3 cut(s) 485, 897, 1260
SatI GCNGC 7 cut(s) 6, 105, 190, 193, 285, 306, 1208
Sau3AI GATC 4 cut(s) 70, 213, 947, 1307
Sau96I GGNCC 3 cut(s) 410, 553, 864
SchI GAGTC 4 cut(s) 194, 300, 512, 1232
ScrFI CCNGG 1 cut(s) 1281
SduI GDGCHC 5 cut(s) 277, 787, 880, 1113, 1134
SfaNI GCATC 2 cut(s) 483, 841
SfcI CTRYAG 1 cut(s) 571
Sfr274I CTCGAG 1 cut(s) 1266
SinI GGWCC 3 cut(s) 410, 553, 864
SlaI CTCGAG 1 cut(s) 1266
SmiMI CAYNNNNRTG 4 cut(s) 747, 885, 936, 1137
SmlI CTYRAG 1 cut(s) 1266
SmoI CTYRAG 1 cut(s) 1266
Sse9I AATT 4 cut(s) 760, 1247, 1257, 1343
SspMI CTAG 2 cut(s) 674, 1242
StyD4I CCNGG 1 cut(s) 1279
StyI CCWWGG 2 cut(s) 153, 556
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 2 cut(s) 638, 1087
TaqI TCGA 5 cut(s) 69, 178, 234, 258, 1267
TaqII GACCGA 1 cut(s) 881
TasI AATT 4 cut(s) 760, 1247, 1257, 1343
TauI GCSGC 4 cut(s) 8, 107, 308, 1210
TfiI GAWTC 3 cut(s) 180, 260, 710
Tru1I TTAA 3 cut(s) 485, 897, 1260
Tru9I TTAA 3 cut(s) 485, 897, 1260
TseFI GTSAC 4 cut(s) 172, 650, 1235, 1314
TseI GCWGC 3 cut(s) 189, 192, 284
Tsp45I GTSAC 4 cut(s) 172, 650, 1235, 1314
TspDTI ATGAA 4 cut(s) 531, 731, 765, 1344
TspGWI ACGGA 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 203
VneI GTGCAC 2 cut(s) 783, 1130
VpaK11BI GGWCC 3 cut(s) 410, 553, 864
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 1343
XceI RCATGY 1 cut(s) 1067
XhoI CTCGAG 1 cut(s) 1266
XmiI GTMKAC 2 cut(s) 892, 1287
XmnI GAANNNNTTC 2 cut(s) 738, 1039
XspI CTAG 2 cut(s) 674, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.