RchiOBHm_Chr6g0304201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005878
Physical Location & Seq
Forward (+)
63581802 .. 63586622
4821 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27330

Sequence Viewer

Length: 1395 bp
ATGGCGGCGGCCACCACCACCACTAGAGGCTTCGCGACTCACCCCAGCCACCTCTCCTTCCTCCATCACCTACCGCATCCGCACCGGAACAATGCTCACCCCGCCGACGTGGACGAGCTGAGCAAGCGGCGGAGGCTCACCATCGGCCGAAACCGAGTCGGAGTGAGTCGAATCAGTTGCTGCTGTTCCGACTCGGCGGTTCCGATTCGGAGCAGCTCCCCCGCCGAGAAGAGGAACAAGTGCGATGAGCGGCGGTTCGATTCCAACAACAGGCCTCCTCACAGAGCTGGACTCAAAGCTGCTGCTGCATTGCCCTTTGCTTCTGAGCAATCTCAATTTGCCTCCAAACAAAACAGCAAGGTGAACCCTCGCCGCCGCCCTCGCTGTACTCCGGGGAATACCGGTCCACAATCTCGTGATACTCCGCCGAAAAGAGATACTGGTATTGCCAGTGAGAAGGAATGGGGTATTAGCTTGTTAAACGAACATGTGAAGGAATCCGGCACTAATGAAGATGGAAGTACTTGGTACCGAGAAAGCGGGGAGGAGCTGGGGAACACTGGGTACAGATGTAGGTGGACAAGGATGGGTGGTGCTTCTCATGACTCCTCTTCAGAGTGGAGAGAAGAGTGGTGGGAGAAAAGTGACTGGACCGGATACAAAGAGCTAGGTGTGGAGAAATCTGGTAGAAATGCCGAGGGGGATTCATGGTGGGAAACCTGGCAAGAGGTTCTTCATCAAGATGAATGGAGTAACCTAGCAAGGATTGAGAGAAGTGCACAGAAACGAGCAAAATCAGGCACTGAAAATGCTGGATGGTCTGAGAAATGGTGGGAGAAATATGATGCCAAAGGCTGGACTGAGAAAGGAGCACACAAATGGGGTAGACTTAATGAACAGTCTTGGTGGGAGAAGTGGGGAGAGCATTATGACGGAAGGGGATCAGTTCTCAAATGGACAGATAAATGGGCAGAGACTGAACTTGGAACTAAATGGGGAGACAAGTGGGAAGAGAAGTTCTTTGAGGGTATAGGTTCACGACAAGGGGAAACATGGCATGTAACTTCCAATGATGACCGTTGGTCAAGGACATGGGGAGAAGAACACATAGGAAATGGTAAAGTGCACAAATATGGGAAGAGCACCACAGGTGAAAGCTGGGATATTGTTGTGGATGAGGAGACCTATTATGAGGCTGTGCCGCATTACGGATGGGCAGATGTTGTAGGCGATTCTACCCAGTTACTATCAATTGAACCCCGTGAAAAGCCGCCTGAGGTCTACCCAAACTTTGACTTTACGAGATCACCACCTGCAATGGGTACACCGCTTCCAGAGAATGAACCACCACCACCACCACCACCTACAGAGGATGAACCACCTCCGGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

464

Amino Acids

53.1

Weight (kDa)

5.99

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1321
Acc36I ACCTGC 1 cut(s) 1321
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 528
AccB7I CCANNNNNTGG 1 cut(s) 855
AccBSI CCGCTC 1 cut(s) 250
AccI GTMKAC 2 cut(s) 886, 1281
AccII CGCG 1 cut(s) 35
AccIII TCCGGA 1 cut(s) 1384
AclWI GGATC 1 cut(s) 949
AcoI YGGCCR 2 cut(s) 9, 145
AcuI CTGAAG 1 cut(s) 597
AfaI GTAC 5 cut(s) 388, 523, 530, 566, 1324
AfiI CCNNNNNNNGG 5 cut(s) 231, 270, 855, 1208, 1319
AflIII ACRYGT 1 cut(s) 487
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 1 cut(s) 1256
AhdI GACNNNNNGTC 1 cut(s) 1081
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 719
AloI GAACNNNNNNTCC 2 cut(s) 1001, 1033
AluBI AGCT 8 cut(s) 118, 216, 287, 299, 474, 550, 667, 1158
AluI AGCT 8 cut(s) 118, 216, 287, 299, 474, 550, 667, 1158
Alw21I GWGCWC 4 cut(s) 781, 874, 1128, 1145
Alw26I GTCTC 3 cut(s) 968, 993, 1175
Alw44I GTGCAC 2 cut(s) 777, 1124
AlwI GGATC 1 cut(s) 949
AlwNI CAGNNNCTG 3 cut(s) 180, 803, 977
Aor13HI TCCGGA 1 cut(s) 1384
AoxI GGCC 3 cut(s) 9, 145, 272
ApaLI GTGCAC 2 cut(s) 777, 1124
ApeKI GCWGC 5 cut(s) 180, 213, 299, 302, 305
AsiGI ACCGGT 1 cut(s) 401
Asp718I GGTACC 1 cut(s) 528
AspS9I GGNCC 2 cut(s) 404, 651
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 7 cut(s) 32, 59, 89, 130, 373, 1163, 1299
AvaII GGWCC 2 cut(s) 404, 651
AxyI CCTNAGG 1 cut(s) 1275
BaeGI GKGCMC 2 cut(s) 781, 1128
BaeI ACNNNNGTAYC 2 cut(s) 556, 589
BanI GGYRCC 1 cut(s) 528
BauI CACGAG 1 cut(s) 414
Bbv12I GWGCWC 4 cut(s) 781, 874, 1128, 1145
BbvI GCAGC 5 cut(s) 167, 225, 286, 289, 292
BccI CCATC 6 cut(s) 72, 149, 509, 580, 810, 1206
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BciT130I CCWGG 1 cut(s) 721
BciVI GTATCC 1 cut(s) 650
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 3 cut(s) 968, 993, 1175
BfaI CTAG 3 cut(s) 24, 668, 758
BfmI CTRYAG 1 cut(s) 1365
BfuAI ACCTGC 1 cut(s) 1321
BfuI GTATCC 1 cut(s) 650
BlpI GCTNAGC 1 cut(s) 119
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 2 cut(s) 393, 721
Bme18I GGWCC 2 cut(s) 404, 651
BmeRI GACNNNNNGTC 1 cut(s) 1081
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 404, 651
BmiI GGNNCC 2 cut(s) 201, 530
BmrFI CCNGG 2 cut(s) 393, 721
BmrI ACTGGG 2 cut(s) 570, 1234
BmsI GCATC 2 cut(s) 85, 835
BmuI ACTGGG 2 cut(s) 570, 1234
BplI GAGNNNNNCTC 2 cut(s) 276, 308
Bpu1102I GCTNAGC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 1175
BsaJI CCNNGG 2 cut(s) 392, 696
BsaWI WCCGGW 4 cut(s) 84, 401, 653, 1384
Bsc4I CCNNNNNNNGG 5 cut(s) 231, 270, 855, 1208, 1319
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 5 cut(s) 445, 450, 565, 653, 1240
Bse21I CCTNAGG 1 cut(s) 1275
Bse3DI GCAATG 2 cut(s) 308, 1323
BseAI TCCGGA 1 cut(s) 1384
BseBI CCWGG 1 cut(s) 721
BseDI CCNNGG 2 cut(s) 392, 696
BseGI GGATG 6 cut(s) 76, 591, 821, 1180, 1217, 1378
BseLI CCNNNNNNNGG 5 cut(s) 231, 270, 855, 1208, 1319
BseMI GCAATG 2 cut(s) 308, 1323
BseMII CTCAG 5 cut(s) 110, 315, 813, 852, 1266
BseNI ACTGG 5 cut(s) 445, 450, 565, 653, 1240
BseRI GAGGAG 4 cut(s) 267, 560, 598, 1193
BseSI GKGCMC 2 cut(s) 781, 1128
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 5 cut(s) 167, 225, 286, 289, 292
BseYI CCCAGC 3 cut(s) 44, 550, 1158
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 3 cut(s) 11, 147, 274
BshNI GGYRCC 1 cut(s) 528
BshTI ACCGGT 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 4 cut(s) 781, 874, 1128, 1145
BsiSI CCGG 6 cut(s) 85, 392, 402, 501, 654, 1385
BslI CCNNNNNNNGG 5 cut(s) 231, 270, 855, 1208, 1319
BsmAI GTCTC 3 cut(s) 968, 993, 1175
BsnI GGCC 3 cut(s) 11, 147, 274
Bso31I GGTCTC 1 cut(s) 1175
Bsp1286I GDGCHC 4 cut(s) 781, 874, 1128, 1145
Bsp13I TCCGGA 1 cut(s) 1384
Bsp143I GATC 2 cut(s) 941, 1304
Bsp1720I GCTNAGC 1 cut(s) 119
Bsp68I TCGCGA 1 cut(s) 35
BspANI GGCC 3 cut(s) 11, 147, 274
BspCNI CTCAG 5 cut(s) 111, 316, 814, 853, 1267
BspEI TCCGGA 1 cut(s) 1384
BspFNI CGCG 1 cut(s) 35
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 2 cut(s) 201, 530
BspMI ACCTGC 1 cut(s) 1321
BspPI GGATC 1 cut(s) 949
BspQI GCTCTTC 1 cut(s) 1133
BspT107I GGYRCC 1 cut(s) 528
BspTNI GGTCTC 1 cut(s) 1175
BsrBI CCGCTC 1 cut(s) 250
BsrDI GCAATG 2 cut(s) 308, 1323
BsrFI RCCGGY 1 cut(s) 401
BsrI ACTGG 5 cut(s) 445, 450, 565, 653, 1240
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 392, 696
BssMI GATC 2 cut(s) 941, 1304
BssSI CACGAG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 721
Bst4CI ACNGT 2 cut(s) 900, 1079
Bst6I CTCTTC 5 cut(s) 224, 616, 621, 1005, 1133
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 5 cut(s) 119, 324, 822, 861, 1275
BstF5I GGATG 6 cut(s) 76, 591, 821, 1180, 1217, 1378
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 2 cut(s) 944, 1307
BstMAI GTCTC 3 cut(s) 968, 993, 1175
BstMBI GATC 2 cut(s) 941, 1304
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 5 cut(s) 101, 124, 133, 305, 381
BstNI CCWGG 1 cut(s) 721
BstNSI RCATGY 2 cut(s) 491, 1061
BstSCI CCNGG 2 cut(s) 391, 719
BstSFI CTRYAG 1 cut(s) 1365
BstSLI GKGCMC 2 cut(s) 781, 1128
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 5 cut(s) 167, 225, 286, 289, 292
BstZI CGGCCG 1 cut(s) 145
Bsu36I CCTNAGG 1 cut(s) 1275
BsuI GTATCC 1 cut(s) 650
BsuRI GGCC 3 cut(s) 11, 147, 274
BtgZI GCGATG 1 cut(s) 258
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 6 cut(s) 76, 591, 821, 1180, 1217, 1378
BtsIMutI CAGTG 3 cut(s) 457, 558, 801
BtuMI TCGCGA 1 cut(s) 35
BveI ACCTGC 1 cut(s) 1321
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 3 cut(s) 180, 803, 977
CciI TCATGA 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 2 cut(s) 404, 651
Csp6I GTAC 5 cut(s) 387, 522, 529, 565, 1323
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 6 cut(s) 488, 602, 708, 1053, 1058, 1092
CviQI GTAC 5 cut(s) 387, 522, 529, 565, 1323
DdeI CTNAG 5 cut(s) 119, 324, 822, 861, 1275
DpnI GATC 2 cut(s) 943, 1306
DpnII GATC 2 cut(s) 941, 1304
DriI GACNNNNNGTC 1 cut(s) 1081
EaeI YGGCCR 2 cut(s) 9, 145
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 5 cut(s) 224, 616, 621, 1005, 1133
Eam1105I GACNNNNNGTC 1 cut(s) 1081
EarI CTCTTC 5 cut(s) 224, 616, 621, 1005, 1133
EciI GGCGGA 2 cut(s) 145, 414
EclXI CGGCCG 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 1175
Eco47I GGWCC 2 cut(s) 404, 651
Eco52I CGGCCG 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 597
Eco81I CCTNAGG 1 cut(s) 1275
EcoRII CCWGG 1 cut(s) 719
FaeI CATG 6 cut(s) 491, 605, 711, 1056, 1061, 1095
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FatI CATG 6 cut(s) 487, 601, 707, 1052, 1057, 1091
FauI CCCGC 3 cut(s) 109, 229, 533
FblI GTMKAC 2 cut(s) 886, 1281
FokI GGATG 6 cut(s) 63, 598, 828, 1187, 1224, 1385
FspBI CTAG 3 cut(s) 24, 668, 758
GsaI CCCAGC 3 cut(s) 48, 554, 1162
HaeIII GGCC 3 cut(s) 11, 147, 274
HapII CCGG 6 cut(s) 85, 392, 402, 501, 654, 1385
Hin1II CATG 6 cut(s) 491, 605, 711, 1056, 1061, 1095
HpaII CCGG 6 cut(s) 85, 392, 402, 501, 654, 1385
HphI GGTGA 7 cut(s) 32, 59, 89, 130, 373, 1163, 1299
Hpy188I TCNGA 7 cut(s) 161, 190, 204, 210, 325, 616, 823
Hpy188III TCNNGA 7 cut(s) 34, 416, 602, 740, 1038, 1334, 1385
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 4 cut(s) 67, 451, 487, 930
HpyCH4III ACNGT 2 cut(s) 900, 1079
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 4 cut(s) 308, 779, 1126, 1316
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 124, 133, 305, 381
HpyF3I CTNAG 5 cut(s) 119, 324, 822, 861, 1275
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 6 cut(s) 491, 605, 711, 1056, 1061, 1095
Kpn2I TCCGGA 1 cut(s) 1384
KpnI GGTACC 1 cut(s) 532
Kzo9I GATC 2 cut(s) 941, 1304
LguI GCTCTTC 1 cut(s) 1133
LmnI GCTCC 4 cut(s) 210, 221, 547, 869
Lsp1109I GCAGC 5 cut(s) 167, 225, 286, 289, 292
LweI GCATC 2 cut(s) 85, 835
MaeI CTAG 3 cut(s) 24, 668, 758
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 4 cut(s) 644, 752, 1060, 1242
MalI GATC 2 cut(s) 943, 1306
MbiI CCGCTC 1 cut(s) 250
MboI GATC 2 cut(s) 941, 1304
MboII GAAGA 8 cut(s) 241, 524, 603, 638, 725, 1022, 1112, 1150
MfeI CAATTG 1 cut(s) 1251
MhlI GDGCHC 4 cut(s) 781, 874, 1128, 1145
MluCI AATT 2 cut(s) 335, 1251
MlyI GAGTC 6 cut(s) 31, 165, 175, 185, 285, 599
MmeI TCCRAC 3 cut(s) 139, 213, 288
MroI TCCGGA 1 cut(s) 1384
MseI TTAA 3 cut(s) 479, 891, 1393
MslI CAYNNNNRTG 3 cut(s) 741, 877, 1131
MspI CCGG 6 cut(s) 85, 392, 402, 501, 654, 1385
MspR9I CCNGG 2 cut(s) 393, 721
MunI CAATTG 1 cut(s) 1251
MvaI CCWGG 1 cut(s) 721
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 5 cut(s) 101, 124, 133, 305, 381
NciI CCSGG 1 cut(s) 393
NdeII GATC 2 cut(s) 941, 1304
NlaIII CATG 6 cut(s) 491, 605, 711, 1056, 1061, 1095
NlaIV GGNNCC 2 cut(s) 201, 530
NmeAIII GCCGAG 3 cut(s) 173, 250, 721
NmuCI GTSAC 1 cut(s) 644
NruI TCGCGA 1 cut(s) 35
NspI RCATGY 2 cut(s) 491, 1061
PagI TCATGA 1 cut(s) 601
PaqCI CACCTGC 1 cut(s) 1321
PceI AGGCCT 1 cut(s) 274
PciI ACATGT 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 1133
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PfeI GAWTC 6 cut(s) 171, 205, 260, 497, 704, 1232
PflMI CCANNNNNTGG 1 cut(s) 855
PinAI ACCGGT 1 cut(s) 401
PleI GAGTC 6 cut(s) 31, 164, 174, 185, 285, 599
PpsI GAGTC 6 cut(s) 31, 164, 174, 185, 285, 599
PscI ACATGT 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 719
PspFI CCCAGC 3 cut(s) 44, 550, 1158
PspGI CCWGG 1 cut(s) 719
PspN4I GGNNCC 2 cut(s) 201, 530
PspPI GGNCC 2 cut(s) 404, 651
PsrI GAACNNNNNNTAC 2 cut(s) 548, 580
PstNI CAGNNNCTG 3 cut(s) 180, 803, 977
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 5 cut(s) 388, 523, 530, 566, 1324
RsaNI GTAC 5 cut(s) 387, 522, 529, 565, 1323
RseI CAYNNNNRTG 3 cut(s) 741, 877, 1131
SapI GCTCTTC 1 cut(s) 1133
SaqAI TTAA 3 cut(s) 479, 891, 1393
Sau3AI GATC 2 cut(s) 941, 1304
Sau96I GGNCC 2 cut(s) 404, 651
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 6 cut(s) 31, 165, 175, 185, 285, 599
ScrFI CCNGG 2 cut(s) 393, 721
SduI GDGCHC 4 cut(s) 781, 874, 1128, 1145
SfaNI GCATC 2 cut(s) 85, 835
SfcI CTRYAG 1 cut(s) 1365
SinI GGWCC 2 cut(s) 404, 651
SmiMI CAYNNNNRTG 3 cut(s) 741, 877, 1131
Sse9I AATT 2 cut(s) 335, 1251
SseBI AGGCCT 1 cut(s) 274
SspMI CTAG 3 cut(s) 24, 668, 758
StuI AGGCCT 1 cut(s) 274
StyD4I CCNGG 2 cut(s) 391, 719
TaaI ACNGT 2 cut(s) 900, 1079
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 169, 258
TasI AATT 2 cut(s) 335, 1251
TatI WGTACW 2 cut(s) 386, 521
TauI GCSGC 8 cut(s) 8, 11, 130, 253, 375, 378, 1204, 1273
TfiI GAWTC 6 cut(s) 171, 205, 260, 497, 704, 1232
Tru1I TTAA 3 cut(s) 479, 891, 1393
Tru9I TTAA 3 cut(s) 479, 891, 1393
TscAI CASTG 3 cut(s) 457, 565, 808
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 5 cut(s) 180, 213, 299, 302, 305
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 7 cut(s) 525, 696, 725, 759, 909, 1356, 1389
TspGWI ACGGA 2 cut(s) 948, 1224
TspRI CASTG 3 cut(s) 457, 565, 808
Van91I CCANNNNNTGG 1 cut(s) 855
VneI GTGCAC 2 cut(s) 777, 1124
VpaK11BI GGWCC 2 cut(s) 404, 651
XceI RCATGY 2 cut(s) 491, 1061
XmiI GTMKAC 2 cut(s) 886, 1281
XspI CTAG 3 cut(s) 24, 668, 758
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.