Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005878

Physical Location & Seq

Genomic Coordinates Reverse (-)

1062374 .. 1064614

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1011800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATTCCCATCTGTTATCTTTTCATAGGTGTGGGGAAATCTGGTAGAAATGCTGAAGGGGATTCGTGGTGGGAAACTTGGCAAGAAGTTCTTCATCAAGATGAATGGAGGTGGGAGAAATATGATGCTAAAGGCTGGACCGAGAAAGGAGCACACAAATATGGTAGACTTAATGAGCAGTCCTGGTGGGAGAAGTGGGGAGAGCATTATGATGGAAGGGGATCTGTTCTCAAATGGACTGATAAATGGGCTGAGACTGAACTTGGAACCAAATGGGGAGACAAGTGGGAAGAGAAGTTCTTTGCTCGAATAGGTTCGCGACAAGGGGAGACATGGCATGTATCTCCAAGCGGTGAACGTTGGTCAAGGACATGGGGAGAAGAGCACTTTGTAAATGGTAAGGTGCACAAATATGGGAAAAGCACGACTGGGGAAAGCTGGGATATTGTTGTGGACGAGGAGACCTATTACGAGGCTGAGCCGCATTACGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

19.6

Weight (kDa)

5.41

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42430 AT1G42430
fragaria_vesca	FvH4_2g37530 FvH4_2g37530 FvH4_2g37530 FvH4_2g37530 FvH4_2g37530
malus_domestica	MD07G1011800.v1.1 MD08G1002900.v1.1 MD11G1103700.v1.1 MD15G1002600.v1.1
prunus_persica	Prupe.1G354900_v2.0.a1
pyrus_communis	pycom08g00240 pycom15g00150
rosa_chinensis	RchiOBHm_Chr6g0304201
rosa_laevigata	RLG00000011007
rosa_multiflora	Rmu_co8390907.1_g000001 Rmu_ssc0000218.1_g000011
rosa_roxburghii	Rroxscaffold_7G00163980
rosa_rugosa	Rorug06G0328400 Rorug06G0328500 Rorug06G0328600 Rorug06G0328700
rosa_samantha	Rh6AG442500 Rh6BG460200 Rh6CG454700 Rh6DG441900
rosa_wichuraiana	Rw6G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	166
AccII	CGCG	1 cut(s)	319
AciI	CCGC	2 cut(s)	351, 482
AclI	AACGTT	1 cut(s)	358
AclWI	GGATC	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	182
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	1 cut(s)	438
AluI	AGCT	1 cut(s)	438
Alw21I	GWGCWC	3 cut(s)	154, 387, 408
Alw26I	GTCTC	4 cut(s)	248, 273, 323, 455
Alw44I	GTGCAC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	404
Asp700I	GAANNNNTTC	2 cut(s)	90, 313
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	408
Bbv12I	GWGCWC	3 cut(s)	154, 387, 408
BccI	CCATC	2 cut(s)	17, 206
BciT130I	CCWGG	1 cut(s)	184
BcoDI	GTCTC	4 cut(s)	248, 273, 323, 455
BisI	GCNGC	1 cut(s)	482
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	184
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	477
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	2 cut(s)	243, 468
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	408
BseYI	CCCAGC	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	319
BsiHKAI	GWGCWC	3 cut(s)	154, 387, 408
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	4 cut(s)	248, 273, 323, 455
Bso31I	GGTCTC	1 cut(s)	455
Bsp1286I	GDGCHC	3 cut(s)	154, 387, 408
Bsp143I	GATC	1 cut(s)	221
Bsp1720I	GCTNAGC	1 cut(s)	477
Bsp68I	TCGCGA	1 cut(s)	319
BspACI	CCGC	2 cut(s)	351, 482
BspCNI	CTCAG	2 cut(s)	244, 469
BspFNI	CGCG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	433
BssMI	GATC	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	285, 375
BstDEI	CTNAG	2 cut(s)	252, 477
BstFNI	CGCG	1 cut(s)	319
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	4 cut(s)	248, 273, 323, 455
BstMBI	GATC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BtuMI	TCGCGA	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	138
CviAII	CATG	3 cut(s)	333, 338, 372
CviJI	RGCY	5 cut(s)	135, 251, 438, 476, 481
CviKI_1	RGCY	5 cut(s)	135, 251, 438, 476, 481
DdeI	CTNAG	2 cut(s)	252, 477
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	285, 375
EarI	CTCTTC	2 cut(s)	285, 375
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	336, 341, 375
FaiI	YATR	8 cut(s)	26, 123, 162, 210, 334, 339, 373, 414
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	3 cut(s)	332, 337, 371
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	482
GluI	GCNGC	1 cut(s)	482
GsaI	CCCAGC	1 cut(s)	442
Hin1II	CATG	3 cut(s)	336, 341, 375
HinfI	GANTC	2 cut(s)	4, 62
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	4 cut(s)	167, 356, 406, 454
Hpy188III	TCNNGA	2 cut(s)	98, 318
Hpy8I	GTNNAC	4 cut(s)	167, 356, 406, 454
HpyAV	CCTTC	2 cut(s)	50, 210
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	1 cut(s)	406
HpyF3I	CTNAG	2 cut(s)	252, 477
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	3 cut(s)	336, 341, 375
Kzo9I	GATC	1 cut(s)	221
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	6 cut(s)	27, 121, 169, 196, 414, 424
LweI	GCATC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	358
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	3 cut(s)	83, 302, 392
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	3 cut(s)	154, 387, 408
MnlI	CCTC	3 cut(s)	102, 451, 466
MroXI	GAANNNNTTC	2 cut(s)	90, 313
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	5 cut(s)	29, 99, 159, 210, 411
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	319
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	3 cut(s)	336, 341, 375
NlaIV	GGNNCC	1 cut(s)	268
NruI	TCGCGA	1 cut(s)	319
NspI	RCATGY	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	375
PdmI	GAANNNNTTC	2 cut(s)	90, 313
PfeI	GAWTC	2 cut(s)	4, 62
PkrI	GCNGC	1 cut(s)	483
Psp1406I	AACGTT	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	221
RruI	TCGCGA	1 cut(s)	319
RseI	CAYNNNNRTG	5 cut(s)	29, 99, 159, 210, 411
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	482
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	3 cut(s)	154, 387, 408
SetI	ASST	7 cut(s)	31, 113, 316, 361, 405, 440, 467
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	5 cut(s)	29, 99, 159, 210, 411
SsiI	CCGC	2 cut(s)	351, 482
StyD4I	CCNGG	1 cut(s)	182
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	307
TaqII	GACCGA	1 cut(s)	155
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	2 cut(s)	4, 62
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	13, 83, 117
VneI	GTGCAC	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	138
XceI	RCATGY	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	166
XmnI	GAANNNNTTC	2 cut(s)	90, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.