Rmu_co8390907.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8390907.1
OG0005878
Physical Location & Seq
Reverse (-)
156 .. 902
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8390907.1_g000001.1.cds

Sequence Viewer

Length: 339 bp
atgagcaacaatattgctcaaagttggtcaaggacatggggagaagaacacataggaaatggtaaagtgcacaaatatgggaagagcacaacaggtgaaagctgggatattgttgtggatgaggagacctattatgaggctgtgccgcattacggatgggcagatgttgtaggcgattctacccagttactatcaattgaacctcgtgaaaagccgcctgaggtctacccaaactttgactttacgagatcaccacctgcaatgggtacaccgcttccagagaatgaaccaccaccaccatcaccacctacagaggatgaaccacctccggaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.54

Weight (kDa)

4.32

Isoelectric Point (pI)

76.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 1 cut(s) 265
AccI GTMKAC 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 3 cut(s) 146, 215, 272
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 152, 263
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw21I GWGCWC 2 cut(s) 72, 89
Alw26I GTCTC 1 cut(s) 119
Alw44I GTGCAC 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 328
ApaLI GTGCAC 1 cut(s) 68
AsuHPI GGTGA 3 cut(s) 107, 243, 294
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 72
BauI CACGAG 1 cut(s) 204
Bbv12I GWGCWC 2 cut(s) 72, 89
BccI CCATC 2 cut(s) 150, 307
BcoDI GTCTC 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 2 cut(s) 146, 215
BlsI GCNGC 2 cut(s) 147, 216
BmrI ACTGGG 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 263
Bse1I ACTGG 1 cut(s) 184
Bse21I CCTNAGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 328
BseGI GGATG 3 cut(s) 124, 161, 322
BseLI CCNNNNNNNGG 2 cut(s) 152, 263
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 72
BseYI CCCAGC 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 72, 89
BsiSI CCGG 1 cut(s) 329
BslI CCNNNNNNNGG 2 cut(s) 152, 263
BsmAI GTCTC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 72, 89
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 1 cut(s) 248
BspACI CCGC 3 cut(s) 146, 215, 272
BspCNI CTCAG 1 cut(s) 211
BspEI TCCGGA 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 265
BspQI GCTCTTC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 184
BssMI GATC 1 cut(s) 248
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
Bst6I CTCTTC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 124, 161, 322
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 72
Bsu36I CCTNAGG 1 cut(s) 219
BtsCI GGATG 3 cut(s) 124, 161, 322
BveI ACCTGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 267
CviAII CATG 1 cut(s) 36
CviJI RGCY 3 cut(s) 102, 140, 214
CviKI_1 RGCY 3 cut(s) 102, 140, 214
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 119
Eco81I CCTNAGG 1 cut(s) 219
FaeI CATG 1 cut(s) 39
FaiI YATR 4 cut(s) 37, 53, 78, 135
FatI CATG 1 cut(s) 35
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 146, 215
FokI GGATG 3 cut(s) 131, 168, 329
Fsp4HI GCNGC 2 cut(s) 146, 215
GluI GCNGC 2 cut(s) 146, 215
GsaI CCCAGC 1 cut(s) 106
HapII CCGG 1 cut(s) 329
Hin1II CATG 1 cut(s) 39
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 329
HphI GGTGA 3 cut(s) 107, 243, 294
Hpy166II GTNNAC 3 cut(s) 70, 226, 269
Hpy188III TCNNGA 3 cut(s) 206, 278, 329
Hpy8I GTNNAC 3 cut(s) 70, 226, 269
HpyCH4V TGCA 2 cut(s) 70, 260
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 39
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 1 cut(s) 248
LguI GCTCTTC 1 cut(s) 77
LpnPI CCDG 6 cut(s) 78, 88, 197, 231, 270, 291
MaeIII GTNAC 1 cut(s) 186
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 2 cut(s) 56, 94
MfeI CAATTG 1 cut(s) 195
MhlI GDGCHC 2 cut(s) 72, 89
MluCI AATT 1 cut(s) 195
MnlI CCTC 6 cut(s) 115, 130, 213, 214, 307, 336
MroI TCCGGA 1 cut(s) 328
MseI TTAA 1 cut(s) 337
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 1 cut(s) 329
MunI CAATTG 1 cut(s) 195
NdeII GATC 1 cut(s) 248
NlaIII CATG 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 147, 216
PspFI CCCAGC 1 cut(s) 102
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 337
SatI GCNGC 2 cut(s) 146, 215
Sau3AI GATC 1 cut(s) 248
SduI GDGCHC 2 cut(s) 72, 89
SetI ASST 8 cut(s) 97, 104, 131, 205, 225, 259, 310, 328
SfcI CTRYAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 1 cut(s) 195
SsiI CCGC 3 cut(s) 146, 215, 272
SspI AATATT 1 cut(s) 13
TasI AATT 1 cut(s) 195
TauI GCSGC 2 cut(s) 148, 217
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 300, 333
TspGWI ACGGA 1 cut(s) 168
VneI GTGCAC 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.