No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G42430 AT1G42430 |
| fragaria_vesca | FvH4_2g37530 FvH4_2g37530 FvH4_2g37530 FvH4_2g37530 FvH4_2g37530 |
| malus_domestica | MD07G1011800.v1.1 MD08G1002900.v1.1 MD11G1103700.v1.1 MD15G1002600.v1.1 |
| prunus_persica | Prupe.1G354900_v2.0.a1 |
| pyrus_communis | pycom08g00240 pycom15g00150 |
| rosa_chinensis | RchiOBHm_Chr6g0304201 |
| rosa_laevigata | RLG00000011007 |
| rosa_multiflora | Rmu_co8390907.1_g000001 Rmu_ssc0000218.1_g000011 |
| rosa_roxburghii | Rroxscaffold_7G00163980 |
| rosa_rugosa | Rorug06G0328400 Rorug06G0328500 Rorug06G0328600 Rorug06G0328700 |
| rosa_samantha | Rh6AG442500 Rh6BG460200 Rh6CG454700 Rh6DG441900 |
| rosa_wichuraiana | Rw6G038360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 584 |
| AccB1I | GGYRCC | 1 cut(s) | 584 |
| AccBSI | CCGCTC | 1 cut(s) | 232 |
| AccI | GTMKAC | 2 cut(s) | 877, 1272 |
| AccII | CGCG | 3 cut(s) | 70, 150, 1030 |
| AccIII | TCCGGA | 1 cut(s) | 203 |
| AclI | AACGTT | 1 cut(s) | 1069 |
| AclWI | GGATC | 2 cut(s) | 940, 1300 |
| AcsI | RAATTY | 1 cut(s) | 1328 |
| AcyI | GRCGYC | 1 cut(s) | 1269 |
| AfaI | GTAC | 4 cut(s) | 85, 379, 514, 586 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 139, 266, 1199 |
| AgsI | TTSAA | 2 cut(s) | 43, 1242 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 152 |
| AjnI | CCWGG | 1 cut(s) | 1264 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 992, 1024 |
| AluBI | AGCT | 7 cut(s) | 46, 109, 266, 465, 658, 1149, 1310 |
| AluI | AGCT | 7 cut(s) | 46, 109, 266, 465, 658, 1149, 1310 |
| Alw21I | GWGCWC | 4 cut(s) | 772, 865, 1098, 1119 |
| Alw26I | GTCTC | 4 cut(s) | 959, 984, 1034, 1166 |
| Alw44I | GTGCAC | 2 cut(s) | 768, 1115 |
| AlwI | GGATC | 2 cut(s) | 940, 1300 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 171, 794 |
| Aor13HI | TCCGGA | 1 cut(s) | 203 |
| AoxI | GGCC | 2 cut(s) | 254, 1259 |
| ApaLI | GTGCAC | 2 cut(s) | 768, 1115 |
| ApeKI | GCWGC | 5 cut(s) | 5, 171, 174, 284, 329 |
| ApoI | RAATTY | 1 cut(s) | 1328 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 723, 1024 |
| Asp718I | GGTACC | 1 cut(s) | 584 |
| AspLEI | GCGC | 1 cut(s) | 72 |
| AspS9I | GGNCC | 3 cut(s) | 142, 395, 642 |
| AsuHPI | GGTGA | 3 cut(s) | 23, 1076, 1154 |
| AsuII | TTCGAA | 1 cut(s) | 245 |
| AvaII | GGWCC | 3 cut(s) | 142, 395, 642 |
| BaeGI | GKGCMC | 2 cut(s) | 772, 1119 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 67, 100, 547, 580 |
| BanI | GGYRCC | 1 cut(s) | 584 |
| BauI | CACGAG | 2 cut(s) | 405, 1251 |
| BbsI | GAAGAC | 1 cut(s) | 309 |
| Bbv12I | GWGCWC | 4 cut(s) | 772, 865, 1098, 1119 |
| BbvCI | CCTCAGC | 1 cut(s) | 110 |
| BbvI | GCAGC | 5 cut(s) | 17, 158, 161, 271, 316 |
| BccI | CCATC | 5 cut(s) | 72, 500, 571, 801, 1197 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 150, 184 |
| BciT130I | CCWGG | 1 cut(s) | 1266 |
| BciVI | GTATCC | 2 cut(s) | 548, 641 |
| BcoDI | GTCTC | 4 cut(s) | 959, 984, 1034, 1166 |
| BfaI | CTAG | 9 cut(s) | 15, 81, 261, 351, 384, 659, 749, 1059, 1227 |
| BfuI | GTATCC | 2 cut(s) | 548, 641 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 221 |
| BisI | GCNGC | 9 cut(s) | 6, 52, 97, 172, 175, 233, 285, 330, 1193 |
| BlpI | GCTNAGC | 1 cut(s) | 1188 |
| BlsI | GCNGC | 9 cut(s) | 7, 53, 98, 173, 176, 234, 286, 331, 1194 |
| Bme1390I | CCNGG | 1 cut(s) | 1266 |
| Bme18I | GGWCC | 3 cut(s) | 142, 395, 642 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 152 |
| BmgT120I | GGNCC | 3 cut(s) | 142, 395, 642 |
| BmiI | GGNNCC | 3 cut(s) | 143, 586, 979 |
| BmrFI | CCNGG | 1 cut(s) | 1266 |
| BmrI | ACTGGG | 1 cut(s) | 463 |
| BmsI | GCATC | 2 cut(s) | 468, 586 |
| BmuI | ACTGGG | 1 cut(s) | 463 |
| BpiI | GAAGAC | 1 cut(s) | 309 |
| BpmI | CTGGAG | 2 cut(s) | 288, 1290 |
| Bpu10I | CCTNAGC | 1 cut(s) | 110 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1188 |
| Bpu14I | TTCGAA | 1 cut(s) | 245 |
| BpuEI | CTTGAG | 2 cut(s) | 672, 1304 |
| BsaAI | YACGTR | 1 cut(s) | 1051 |
| BsaHI | GRCGYC | 1 cut(s) | 1269 |
| BsaI | GGTCTC | 1 cut(s) | 1166 |
| BsaWI | WCCGGW | 2 cut(s) | 203, 644 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1288, 1318 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 139, 266, 1199 |
| Bse1I | ACTGG | 4 cut(s) | 436, 458, 644, 1231 |
| Bse3DI | GCAATG | 2 cut(s) | 97, 287 |
| BseAI | TCCGGA | 1 cut(s) | 203 |
| BseBI | CCWGG | 1 cut(s) | 1266 |
| BseGI | GGATG | 5 cut(s) | 64, 582, 812, 1171, 1208 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 139, 266, 1199 |
| BseMI | GCAATG | 2 cut(s) | 97, 287 |
| BseMII | CTCAG | 6 cut(s) | 101, 192, 786, 843, 954, 1179 |
| BseNI | ACTGG | 4 cut(s) | 436, 458, 644, 1231 |
| BseRI | GAGGAG | 3 cut(s) | 119, 136, 1184 |
| BseSI | GKGCMC | 2 cut(s) | 772, 1119 |
| BseXI | GCAGC | 5 cut(s) | 17, 158, 161, 271, 316 |
| BseYI | CCCAGC | 1 cut(s) | 1149 |
| Bsh1236I | CGCG | 3 cut(s) | 70, 150, 1030 |
| BshFI | GGCC | 2 cut(s) | 256, 1261 |
| BshNI | GGYRCC | 1 cut(s) | 584 |
| BsiHKAI | GWGCWC | 4 cut(s) | 772, 865, 1098, 1119 |
| BsiSI | CCGG | 2 cut(s) | 204, 645 |
| BslFI | GGGAC | 2 cut(s) | 155, 508 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 139, 266, 1199 |
| BsmAI | GTCTC | 4 cut(s) | 959, 984, 1034, 1166 |
| BsmFI | GGGAC | 2 cut(s) | 155, 508 |
| BsmI | GAATGC | 1 cut(s) | 805 |
| BsnI | GGCC | 2 cut(s) | 256, 1261 |
| Bso31I | GGTCTC | 1 cut(s) | 1166 |
| Bsp119I | TTCGAA | 1 cut(s) | 245 |
| Bsp1286I | GDGCHC | 4 cut(s) | 772, 865, 1098, 1119 |
| Bsp13I | TCCGGA | 1 cut(s) | 203 |
| Bsp143I | GATC | 2 cut(s) | 932, 1292 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1188 |
| Bsp68I | TCGCGA | 1 cut(s) | 1030 |
| BspANI | GGCC | 2 cut(s) | 256, 1261 |
| BspCNI | CTCAG | 6 cut(s) | 102, 191, 787, 844, 955, 1180 |
| BspEI | TCCGGA | 1 cut(s) | 203 |
| BspFNI | CGCG | 3 cut(s) | 70, 150, 1030 |
| BspLI | GGNNCC | 3 cut(s) | 143, 586, 979 |
| BspPI | GGATC | 2 cut(s) | 940, 1300 |
| BspQI | GCTCTTC | 2 cut(s) | 222, 1086 |
| BspT104I | TTCGAA | 1 cut(s) | 245 |
| BspT107I | GGYRCC | 1 cut(s) | 584 |
| BspTNI | GGTCTC | 1 cut(s) | 1166 |
| BsrBI | CCGCTC | 1 cut(s) | 232 |
| BsrDI | GCAATG | 2 cut(s) | 97, 287 |
| BsrI | ACTGG | 4 cut(s) | 436, 458, 644, 1231 |
| BssMI | GATC | 2 cut(s) | 932, 1292 |
| BssNI | GRCGYC | 1 cut(s) | 1269 |
| BssSI | CACGAG | 2 cut(s) | 405, 1251 |
| Bst2BI | CACGAG | 2 cut(s) | 405, 1251 |
| Bst2UI | CCWGG | 1 cut(s) | 1266 |
| Bst6I | CTCTTC | 3 cut(s) | 222, 996, 1086 |
| BstACI | GRCGYC | 1 cut(s) | 1269 |
| BstBAI | YACGTR | 1 cut(s) | 1051 |
| BstBI | TTCGAA | 1 cut(s) | 245 |
| BstC8I | GCNNGC | 1 cut(s) | 276 |
| BstDEI | CTNAG | 6 cut(s) | 110, 178, 795, 852, 963, 1188 |
| BstF5I | GGATG | 5 cut(s) | 64, 582, 812, 1171, 1208 |
| BstFNI | CGCG | 3 cut(s) | 70, 150, 1030 |
| BstHHI | GCGC | 1 cut(s) | 72 |
| BstKTI | GATC | 2 cut(s) | 935, 1295 |
| BstMAI | GTCTC | 4 cut(s) | 959, 984, 1034, 1166 |
| BstMBI | GATC | 2 cut(s) | 932, 1292 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 96, 115, 221, 284, 1227 |
| BstNI | CCWGG | 1 cut(s) | 1266 |
| BstSCI | CCNGG | 1 cut(s) | 1264 |
| BstSLI | GKGCMC | 2 cut(s) | 772, 1119 |
| BstUI | CGCG | 3 cut(s) | 70, 150, 1030 |
| BstV1I | GCAGC | 5 cut(s) | 17, 158, 161, 271, 316 |
| BstV2I | GAAGAC | 1 cut(s) | 309 |
| BstX2I | RGATCY | 1 cut(s) | 932 |
| BstYI | RGATCY | 1 cut(s) | 932 |
| BsuI | GTATCC | 2 cut(s) | 548, 641 |
| BsuRI | GGCC | 2 cut(s) | 256, 1261 |
| BtsCI | GGATG | 5 cut(s) | 64, 582, 812, 1171, 1208 |
| BtsIMutI | CAGTG | 1 cut(s) | 792 |
| BtuMI | TCGCGA | 1 cut(s) | 1030 |
| Cac8I | GCNNGC | 1 cut(s) | 276 |
| CaiI | CAGNNNCTG | 2 cut(s) | 171, 794 |
| CfoI | GCGC | 1 cut(s) | 72 |
| Cfr13I | GGNCC | 3 cut(s) | 142, 395, 642 |
| CseI | GACGC | 3 cut(s) | 156, 845, 1258 |
| Csp6I | GTAC | 4 cut(s) | 84, 378, 513, 585 |
| CviAII | CATG | 6 cut(s) | 516, 593, 699, 894, 1044, 1083 |
| CviQI | GTAC | 4 cut(s) | 84, 378, 513, 585 |
| DdeI | CTNAG | 6 cut(s) | 110, 178, 795, 852, 963, 1188 |
| DpnI | GATC | 2 cut(s) | 934, 1294 |
| DpnII | GATC | 2 cut(s) | 932, 1292 |
| DriI | GACNNNNNGTC | 1 cut(s) | 152 |
| Eam1104I | CTCTTC | 3 cut(s) | 222, 996, 1086 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 152 |
| EarI | CTCTTC | 3 cut(s) | 222, 996, 1086 |
| EciI | GGCGGA | 2 cut(s) | 38, 239 |
| Eco147I | AGGCCT | 1 cut(s) | 256 |
| Eco31I | GGTCTC | 1 cut(s) | 1166 |
| Eco47I | GGWCC | 3 cut(s) | 142, 395, 642 |
| EcoRII | CCWGG | 1 cut(s) | 1264 |
| FaeI | CATG | 6 cut(s) | 519, 596, 702, 897, 1047, 1086 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 708, 740 |
| FaqI | GGGAC | 2 cut(s) | 155, 508 |
| FatI | CATG | 6 cut(s) | 515, 592, 698, 893, 1043, 1082 |
| FauI | CCCGC | 1 cut(s) | 380 |
| FblI | GTMKAC | 2 cut(s) | 877, 1272 |
| Fnu4HI | GCNGC | 9 cut(s) | 6, 52, 97, 172, 175, 233, 285, 330, 1193 |
| FokI | GGATG | 5 cut(s) | 51, 589, 819, 1178, 1215 |
| Fsp4HI | GCNGC | 9 cut(s) | 6, 52, 97, 172, 175, 233, 285, 330, 1193 |
| FspBI | CTAG | 9 cut(s) | 15, 81, 261, 351, 384, 659, 749, 1059, 1227 |
| GlaI | GCGC | 1 cut(s) | 71 |
| GluI | GCNGC | 9 cut(s) | 6, 52, 97, 172, 175, 233, 285, 330, 1193 |
| GsaI | CCCAGC | 1 cut(s) | 1153 |
| GsuI | CTGGAG | 2 cut(s) | 288, 1290 |
| HaeIII | GGCC | 2 cut(s) | 256, 1261 |
| HapII | CCGG | 2 cut(s) | 204, 645 |
| HgaI | GACGC | 3 cut(s) | 156, 845, 1258 |
| HhaI | GCGC | 1 cut(s) | 72 |
| Hin1I | GRCGYC | 1 cut(s) | 1269 |
| Hin1II | CATG | 6 cut(s) | 519, 596, 702, 897, 1047, 1086 |
| Hin6I | GCGC | 1 cut(s) | 70 |
| HinP1I | GCGC | 1 cut(s) | 70 |
| HincII | GTYRAC | 1 cut(s) | 471 |
| HindII | GTYRAC | 1 cut(s) | 471 |
| HinfI | GANTC | 9 cut(s) | 153, 162, 182, 196, 242, 488, 695, 879, 1223 |
| HpaI | GTTAAC | 1 cut(s) | 471 |
| HpaII | CCGG | 2 cut(s) | 204, 645 |
| HphI | GGTGA | 3 cut(s) | 23, 1076, 1154 |
| Hpy166II | GTNNAC | 9 cut(s) | 398, 471, 484, 570, 770, 878, 1067, 1117, 1273 |
| Hpy188I | TCNGA | 3 cut(s) | 181, 195, 1103 |
| Hpy188III | TCNNGA | 8 cut(s) | 15, 204, 351, 407, 524, 731, 1029, 1253 |
| Hpy8I | GTNNAC | 9 cut(s) | 398, 471, 484, 570, 770, 878, 1067, 1117, 1273 |
| Hpy99I | CGWCG | 2 cut(s) | 150, 310 |
| HpyAV | CCTTC | 5 cut(s) | 143, 214, 304, 442, 921 |
| HpyCH4IV | ACGT | 3 cut(s) | 620, 1050, 1069 |
| HpyCH4V | TGCA | 4 cut(s) | 274, 287, 770, 1117 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 96, 115, 221, 284, 1227 |
| HpyF3I | CTNAG | 6 cut(s) | 110, 178, 795, 852, 963, 1188 |
| HpySE526I | ACGT | 3 cut(s) | 620, 1050, 1069 |
| Hsp92I | GRCGYC | 1 cut(s) | 1269 |
| Hsp92II | CATG | 6 cut(s) | 519, 596, 702, 897, 1047, 1086 |
| HspAI | GCGC | 1 cut(s) | 70 |
| Kpn2I | TCCGGA | 1 cut(s) | 203 |
| KpnI | GGTACC | 1 cut(s) | 588 |
| KspAI | GTTAAC | 1 cut(s) | 471 |
| Kzo9I | GATC | 2 cut(s) | 932, 1292 |
| LguI | GCTCTTC | 2 cut(s) | 222, 1086 |
| LmnI | GCTCC | 4 cut(s) | 51, 106, 206, 860 |
| Lsp1109I | GCAGC | 5 cut(s) | 17, 158, 161, 271, 316 |
| LweI | GCATC | 2 cut(s) | 468, 586 |
| MaeI | CTAG | 9 cut(s) | 15, 81, 261, 351, 384, 659, 749, 1059, 1227 |
| MaeII | ACGT | 3 cut(s) | 620, 1050, 1069 |
| MaeIII | GTNAC | 3 cut(s) | 407, 635, 743 |
| MalI | GATC | 2 cut(s) | 934, 1294 |
| MbiI | CCGCTC | 1 cut(s) | 232 |
| MboI | GATC | 2 cut(s) | 932, 1292 |
| MflI | RGATCY | 1 cut(s) | 932 |
| MhlI | GDGCHC | 4 cut(s) | 772, 865, 1098, 1119 |
| MluCI | AATT | 3 cut(s) | 364, 1242, 1328 |
| MlyI | GAGTC | 4 cut(s) | 162, 176, 497, 873 |
| MroI | TCCGGA | 1 cut(s) | 203 |
| MroXI | GAANNNNTTC | 2 cut(s) | 723, 1024 |
| MseI | TTAA | 2 cut(s) | 470, 1245 |
| MslI | CAYNNNNRTG | 3 cut(s) | 732, 870, 1122 |
| MspA1I | CMGCKG | 2 cut(s) | 375, 1310 |
| MspI | CCGG | 2 cut(s) | 204, 645 |
| MspR9I | CCNGG | 1 cut(s) | 1266 |
| Mva1269I | GAATGC | 1 cut(s) | 805 |
| MvaI | CCWGG | 1 cut(s) | 1266 |
| MvnI | CGCG | 3 cut(s) | 70, 150, 1030 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 96, 115, 221, 284, 1227 |
| NdeII | GATC | 2 cut(s) | 932, 1292 |
| NlaIII | CATG | 6 cut(s) | 519, 596, 702, 897, 1047, 1086 |
| NlaIV | GGNNCC | 3 cut(s) | 143, 586, 979 |
| NmeAIII | GCCGAG | 1 cut(s) | 241 |
| NmuCI | GTSAC | 2 cut(s) | 407, 635 |
| NruI | TCGCGA | 1 cut(s) | 1030 |
| NspV | TTCGAA | 1 cut(s) | 245 |
| PceI | AGGCCT | 1 cut(s) | 256 |
| PciSI | GCTCTTC | 2 cut(s) | 222, 1086 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 142, 191, 311 |
| PctI | GAATGC | 1 cut(s) | 805 |
| PdmI | GAANNNNTTC | 2 cut(s) | 723, 1024 |
| PfeI | GAWTC | 5 cut(s) | 162, 196, 242, 695, 1223 |
| PkrI | GCNGC | 9 cut(s) | 7, 53, 98, 173, 176, 234, 286, 331, 1194 |
| PleI | GAGTC | 4 cut(s) | 161, 176, 496, 873 |
| PpsI | GAGTC | 4 cut(s) | 161, 176, 496, 873 |
| Ppu21I | YACGTR | 1 cut(s) | 1051 |
| Psp1406I | AACGTT | 1 cut(s) | 1069 |
| Psp6I | CCWGG | 1 cut(s) | 1264 |
| PspFI | CCCAGC | 1 cut(s) | 1149 |
| PspGI | CCWGG | 1 cut(s) | 1264 |
| PspN4I | GGNNCC | 3 cut(s) | 143, 586, 979 |
| PspPI | GGNCC | 3 cut(s) | 142, 395, 642 |
| PstNI | CAGNNNCTG | 2 cut(s) | 171, 794 |
| PsuI | RGATCY | 1 cut(s) | 932 |
| PvuII | CAGCTG | 1 cut(s) | 1310 |
| RruI | TCGCGA | 1 cut(s) | 1030 |
| RsaI | GTAC | 4 cut(s) | 85, 379, 514, 586 |
| RsaNI | GTAC | 4 cut(s) | 84, 378, 513, 585 |
| RseI | CAYNNNNRTG | 3 cut(s) | 732, 870, 1122 |
| SapI | GCTCTTC | 2 cut(s) | 222, 1086 |
| SaqAI | TTAA | 2 cut(s) | 470, 1245 |
| SatI | GCNGC | 9 cut(s) | 6, 52, 97, 172, 175, 233, 285, 330, 1193 |
| Sau3AI | GATC | 2 cut(s) | 932, 1292 |
| Sau96I | GGNCC | 3 cut(s) | 142, 395, 642 |
| SchI | GAGTC | 4 cut(s) | 162, 176, 497, 873 |
| ScrFI | CCNGG | 1 cut(s) | 1266 |
| SduI | GDGCHC | 4 cut(s) | 772, 865, 1098, 1119 |
| SfaNI | GCATC | 2 cut(s) | 468, 586 |
| SfuI | TTCGAA | 1 cut(s) | 245 |
| SinI | GGWCC | 3 cut(s) | 142, 395, 642 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 732, 870, 1122 |
| SmlI | CTYRAG | 2 cut(s) | 687, 1283 |
| SmoI | CTYRAG | 2 cut(s) | 687, 1283 |
| Sse9I | AATT | 3 cut(s) | 364, 1242, 1328 |
| SseBI | AGGCCT | 1 cut(s) | 256 |
| SspMI | CTAG | 9 cut(s) | 15, 81, 261, 351, 384, 659, 749, 1059, 1227 |
| StuI | AGGCCT | 1 cut(s) | 256 |
| StyD4I | CCNGG | 1 cut(s) | 1264 |
| TaiI | ACGT | 3 cut(s) | 623, 1053, 1072 |
| TaqI | TCGA | 5 cut(s) | 36, 160, 240, 245, 523 |
| TaqII | GACCGA | 1 cut(s) | 159 |
| TasI | AATT | 3 cut(s) | 364, 1242, 1328 |
| TatI | WGTACW | 1 cut(s) | 512 |
| TauI | GCSGC | 4 cut(s) | 54, 99, 235, 1195 |
| TfiI | GAWTC | 5 cut(s) | 162, 196, 242, 695, 1223 |
| Tru1I | TTAA | 2 cut(s) | 470, 1245 |
| Tru9I | TTAA | 2 cut(s) | 470, 1245 |
| TscAI | CASTG | 1 cut(s) | 799 |
| TseFI | GTSAC | 2 cut(s) | 407, 635 |
| TseI | GCWGC | 5 cut(s) | 5, 171, 174, 284, 329 |
| Tsp45I | GTSAC | 2 cut(s) | 407, 635 |
| TspDTI | ATGAA | 5 cut(s) | 516, 687, 716, 750, 1329 |
| TspGWI | ACGGA | 2 cut(s) | 939, 1215 |
| TspRI | CASTG | 1 cut(s) | 799 |
| VneI | GTGCAC | 2 cut(s) | 768, 1115 |
| VpaK11BI | GGWCC | 3 cut(s) | 142, 395, 642 |
| XapI | RAATTY | 1 cut(s) | 1328 |
| XbaI | TCTAGA | 2 cut(s) | 14, 350 |
| XmiI | GTMKAC | 2 cut(s) | 877, 1272 |
| XmnI | GAANNNNTTC | 2 cut(s) | 723, 1024 |
| XspI | CTAG | 9 cut(s) | 15, 81, 261, 351, 384, 659, 749, 1059, 1227 |