Prupe.1G354900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
32948755 .. 32953715
4961 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G354900.1

Sequence Viewer

Length: 1344 bp
ATGGCAGCCACTTCTAGAGGGTTCGCTTCTCACCTCGATTTCAAGCTCCGCCGCCTCGCTTTCCATCCGCGCCCTCACTCTAGTACCAGCAATGGCGGCTTGGAGGAGCTGAGGAAGCGGAGGAGGTTCAGCCTTCGGGGGGACCGACGCGGAGTCAGTCGAATCAGTTGCTGCTGCTCAGACTCGGTTGTTCCGATTCGCTCCGGAAAGAACGCCGAGAAGGCGGAAGAGCGGCGGTTCGATTCGAAGAAAAGGCCTCCTAGAGCTGGAGTGCAAGCCTCTGCTGCATTGCCCTTCTTTGCTTCGTCGTCCTCGTCTTCTTCTTCTGCTGCTCAATCTCATTTTTTGTCTAGACAAGAGAAAAATTACCCCCGCTGTACCCCTAGAAACTCTGGTCCACAATCTCGTGACACTCCACCCAAACGAGATACTGGTATTGCCAATGAGAAGGACTGGGGCATCAGCTTGTTAACCGAAAATGTAAACGAGTCTGGGACTAATGAAGATGGCAGTACATGGTATCGAGAAAGTGGGGAGGACATTGGCGACAATGGATACAGATGTAGGTGGACAAGGATGGGCGGTACCTCCCATGATGCTTCTTCACAATGGAAAGAAACGTGGTGGGAGAAAAGTGACTGGACCGGATACAAAGAGCTAGGTGTGGAGAAATCTGGTAGAAATGCTCAAGGCGATTCATGGTGGGAAACTTGGCAAGAAGTTCTTCATCAAGATGAATGGAGTAACCTAGCAAGGATTGAGAGAAGTGCACAGAAACAAGCAAAATCAGGCACTGAGAATGCTGGATGGTATGAGAAATGGTGGGAGAAATATGACGCTAAAGGCTGGACTGAGAAAGGAGCACACAAATATGGTAGACTCAATGAGCAGTCATGGTGGGAGAAGTGGGGAGAGCATTATGACGGAAGGGGATCTGTTCTCAAATGGACTGATAAATGGGCTGAGACTGAACTTGGAACCAAATGGGGAGACAAGTGGGAAGAGAAGTTCTTTGCTGGAATAGGTTCGCGACAAGGGGAGACATGGCACGTATCTCCTAGTGGTGAACGTTGGTCAAGGACATGGGGAGAAGAGCACTTCGGAAATGGTAAGGTGCACAAATATGGGAAAAGCACAACAGGTGAAAGCTGGGATATTGTTGTGGATGAGGAGACCTATTACGAGGCTGAGCCGCATTACGGATGGGCAGATGTTGTTGGCGATTCTAGCCAGTTGCTTTCAATTAAACCTCGTGAAAGGCCACCTGGCGTCTACCCTAACCTTGAGTTTGGATCAACGCCACCTCCAGCTGATGAACCACCAGAGGAATTTTCTCCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

448

Amino Acids

51.12

Weight (kDa)

6.67

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 584
AccB1I GGYRCC 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 232
AccI GTMKAC 2 cut(s) 877, 1272
AccII CGCG 3 cut(s) 70, 150, 1030
AccIII TCCGGA 1 cut(s) 203
AclI AACGTT 1 cut(s) 1069
AclWI GGATC 2 cut(s) 940, 1300
AcsI RAATTY 1 cut(s) 1328
AcyI GRCGYC 1 cut(s) 1269
AfaI GTAC 4 cut(s) 85, 379, 514, 586
AfiI CCNNNNNNNGG 3 cut(s) 139, 266, 1199
AgsI TTSAA 2 cut(s) 43, 1242
AhdI GACNNNNNGTC 1 cut(s) 152
AjnI CCWGG 1 cut(s) 1264
AloI GAACNNNNNNTCC 2 cut(s) 992, 1024
AluBI AGCT 7 cut(s) 46, 109, 266, 465, 658, 1149, 1310
AluI AGCT 7 cut(s) 46, 109, 266, 465, 658, 1149, 1310
Alw21I GWGCWC 4 cut(s) 772, 865, 1098, 1119
Alw26I GTCTC 4 cut(s) 959, 984, 1034, 1166
Alw44I GTGCAC 2 cut(s) 768, 1115
AlwI GGATC 2 cut(s) 940, 1300
AlwNI CAGNNNCTG 2 cut(s) 171, 794
Aor13HI TCCGGA 1 cut(s) 203
AoxI GGCC 2 cut(s) 254, 1259
ApaLI GTGCAC 2 cut(s) 768, 1115
ApeKI GCWGC 5 cut(s) 5, 171, 174, 284, 329
ApoI RAATTY 1 cut(s) 1328
Asp700I GAANNNNTTC 2 cut(s) 723, 1024
Asp718I GGTACC 1 cut(s) 584
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 3 cut(s) 142, 395, 642
AsuHPI GGTGA 3 cut(s) 23, 1076, 1154
AsuII TTCGAA 1 cut(s) 245
AvaII GGWCC 3 cut(s) 142, 395, 642
BaeGI GKGCMC 2 cut(s) 772, 1119
BaeI ACNNNNGTAYC 4 cut(s) 67, 100, 547, 580
BanI GGYRCC 1 cut(s) 584
BauI CACGAG 2 cut(s) 405, 1251
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 4 cut(s) 772, 865, 1098, 1119
BbvCI CCTCAGC 1 cut(s) 110
BbvI GCAGC 5 cut(s) 17, 158, 161, 271, 316
BccI CCATC 5 cut(s) 72, 500, 571, 801, 1197
BcgI CGANNNNNNTGC 2 cut(s) 150, 184
BciT130I CCWGG 1 cut(s) 1266
BciVI GTATCC 2 cut(s) 548, 641
BcoDI GTCTC 4 cut(s) 959, 984, 1034, 1166
BfaI CTAG 9 cut(s) 15, 81, 261, 351, 384, 659, 749, 1059, 1227
BfuI GTATCC 2 cut(s) 548, 641
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 9 cut(s) 6, 52, 97, 172, 175, 233, 285, 330, 1193
BlpI GCTNAGC 1 cut(s) 1188
BlsI GCNGC 9 cut(s) 7, 53, 98, 173, 176, 234, 286, 331, 1194
Bme1390I CCNGG 1 cut(s) 1266
Bme18I GGWCC 3 cut(s) 142, 395, 642
BmeRI GACNNNNNGTC 1 cut(s) 152
BmgT120I GGNCC 3 cut(s) 142, 395, 642
BmiI GGNNCC 3 cut(s) 143, 586, 979
BmrFI CCNGG 1 cut(s) 1266
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 2 cut(s) 468, 586
BmuI ACTGGG 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 2 cut(s) 288, 1290
Bpu10I CCTNAGC 1 cut(s) 110
Bpu1102I GCTNAGC 1 cut(s) 1188
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 2 cut(s) 672, 1304
BsaAI YACGTR 1 cut(s) 1051
BsaHI GRCGYC 1 cut(s) 1269
BsaI GGTCTC 1 cut(s) 1166
BsaWI WCCGGW 2 cut(s) 203, 644
BsaXI ACNNNNNCTCC 2 cut(s) 1288, 1318
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 266, 1199
Bse1I ACTGG 4 cut(s) 436, 458, 644, 1231
Bse3DI GCAATG 2 cut(s) 97, 287
BseAI TCCGGA 1 cut(s) 203
BseBI CCWGG 1 cut(s) 1266
BseGI GGATG 5 cut(s) 64, 582, 812, 1171, 1208
BseLI CCNNNNNNNGG 3 cut(s) 139, 266, 1199
BseMI GCAATG 2 cut(s) 97, 287
BseMII CTCAG 6 cut(s) 101, 192, 786, 843, 954, 1179
BseNI ACTGG 4 cut(s) 436, 458, 644, 1231
BseRI GAGGAG 3 cut(s) 119, 136, 1184
BseSI GKGCMC 2 cut(s) 772, 1119
BseXI GCAGC 5 cut(s) 17, 158, 161, 271, 316
BseYI CCCAGC 1 cut(s) 1149
Bsh1236I CGCG 3 cut(s) 70, 150, 1030
BshFI GGCC 2 cut(s) 256, 1261
BshNI GGYRCC 1 cut(s) 584
BsiHKAI GWGCWC 4 cut(s) 772, 865, 1098, 1119
BsiSI CCGG 2 cut(s) 204, 645
BslFI GGGAC 2 cut(s) 155, 508
BslI CCNNNNNNNGG 3 cut(s) 139, 266, 1199
BsmAI GTCTC 4 cut(s) 959, 984, 1034, 1166
BsmFI GGGAC 2 cut(s) 155, 508
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 2 cut(s) 256, 1261
Bso31I GGTCTC 1 cut(s) 1166
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 4 cut(s) 772, 865, 1098, 1119
Bsp13I TCCGGA 1 cut(s) 203
Bsp143I GATC 2 cut(s) 932, 1292
Bsp1720I GCTNAGC 1 cut(s) 1188
Bsp68I TCGCGA 1 cut(s) 1030
BspANI GGCC 2 cut(s) 256, 1261
BspCNI CTCAG 6 cut(s) 102, 191, 787, 844, 955, 1180
BspEI TCCGGA 1 cut(s) 203
BspFNI CGCG 3 cut(s) 70, 150, 1030
BspLI GGNNCC 3 cut(s) 143, 586, 979
BspPI GGATC 2 cut(s) 940, 1300
BspQI GCTCTTC 2 cut(s) 222, 1086
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 584
BspTNI GGTCTC 1 cut(s) 1166
BsrBI CCGCTC 1 cut(s) 232
BsrDI GCAATG 2 cut(s) 97, 287
BsrI ACTGG 4 cut(s) 436, 458, 644, 1231
BssMI GATC 2 cut(s) 932, 1292
BssNI GRCGYC 1 cut(s) 1269
BssSI CACGAG 2 cut(s) 405, 1251
Bst2BI CACGAG 2 cut(s) 405, 1251
Bst2UI CCWGG 1 cut(s) 1266
Bst6I CTCTTC 3 cut(s) 222, 996, 1086
BstACI GRCGYC 1 cut(s) 1269
BstBAI YACGTR 1 cut(s) 1051
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 6 cut(s) 110, 178, 795, 852, 963, 1188
BstF5I GGATG 5 cut(s) 64, 582, 812, 1171, 1208
BstFNI CGCG 3 cut(s) 70, 150, 1030
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 2 cut(s) 935, 1295
BstMAI GTCTC 4 cut(s) 959, 984, 1034, 1166
BstMBI GATC 2 cut(s) 932, 1292
BstMWI GCNNNNNNNGC 5 cut(s) 96, 115, 221, 284, 1227
BstNI CCWGG 1 cut(s) 1266
BstSCI CCNGG 1 cut(s) 1264
BstSLI GKGCMC 2 cut(s) 772, 1119
BstUI CGCG 3 cut(s) 70, 150, 1030
BstV1I GCAGC 5 cut(s) 17, 158, 161, 271, 316
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 932
BstYI RGATCY 1 cut(s) 932
BsuI GTATCC 2 cut(s) 548, 641
BsuRI GGCC 2 cut(s) 256, 1261
BtsCI GGATG 5 cut(s) 64, 582, 812, 1171, 1208
BtsIMutI CAGTG 1 cut(s) 792
BtuMI TCGCGA 1 cut(s) 1030
Cac8I GCNNGC 1 cut(s) 276
CaiI CAGNNNCTG 2 cut(s) 171, 794
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 3 cut(s) 142, 395, 642
CseI GACGC 3 cut(s) 156, 845, 1258
Csp6I GTAC 4 cut(s) 84, 378, 513, 585
CviAII CATG 6 cut(s) 516, 593, 699, 894, 1044, 1083
CviQI GTAC 4 cut(s) 84, 378, 513, 585
DdeI CTNAG 6 cut(s) 110, 178, 795, 852, 963, 1188
DpnI GATC 2 cut(s) 934, 1294
DpnII GATC 2 cut(s) 932, 1292
DriI GACNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 3 cut(s) 222, 996, 1086
Eam1105I GACNNNNNGTC 1 cut(s) 152
EarI CTCTTC 3 cut(s) 222, 996, 1086
EciI GGCGGA 2 cut(s) 38, 239
Eco147I AGGCCT 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 1166
Eco47I GGWCC 3 cut(s) 142, 395, 642
EcoRII CCWGG 1 cut(s) 1264
FaeI CATG 6 cut(s) 519, 596, 702, 897, 1047, 1086
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FaqI GGGAC 2 cut(s) 155, 508
FatI CATG 6 cut(s) 515, 592, 698, 893, 1043, 1082
FauI CCCGC 1 cut(s) 380
FblI GTMKAC 2 cut(s) 877, 1272
Fnu4HI GCNGC 9 cut(s) 6, 52, 97, 172, 175, 233, 285, 330, 1193
FokI GGATG 5 cut(s) 51, 589, 819, 1178, 1215
Fsp4HI GCNGC 9 cut(s) 6, 52, 97, 172, 175, 233, 285, 330, 1193
FspBI CTAG 9 cut(s) 15, 81, 261, 351, 384, 659, 749, 1059, 1227
GlaI GCGC 1 cut(s) 71
GluI GCNGC 9 cut(s) 6, 52, 97, 172, 175, 233, 285, 330, 1193
GsaI CCCAGC 1 cut(s) 1153
GsuI CTGGAG 2 cut(s) 288, 1290
HaeIII GGCC 2 cut(s) 256, 1261
HapII CCGG 2 cut(s) 204, 645
HgaI GACGC 3 cut(s) 156, 845, 1258
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 1269
Hin1II CATG 6 cut(s) 519, 596, 702, 897, 1047, 1086
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 9 cut(s) 153, 162, 182, 196, 242, 488, 695, 879, 1223
HpaI GTTAAC 1 cut(s) 471
HpaII CCGG 2 cut(s) 204, 645
HphI GGTGA 3 cut(s) 23, 1076, 1154
Hpy166II GTNNAC 9 cut(s) 398, 471, 484, 570, 770, 878, 1067, 1117, 1273
Hpy188I TCNGA 3 cut(s) 181, 195, 1103
Hpy188III TCNNGA 8 cut(s) 15, 204, 351, 407, 524, 731, 1029, 1253
Hpy8I GTNNAC 9 cut(s) 398, 471, 484, 570, 770, 878, 1067, 1117, 1273
Hpy99I CGWCG 2 cut(s) 150, 310
HpyAV CCTTC 5 cut(s) 143, 214, 304, 442, 921
HpyCH4IV ACGT 3 cut(s) 620, 1050, 1069
HpyCH4V TGCA 4 cut(s) 274, 287, 770, 1117
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 115, 221, 284, 1227
HpyF3I CTNAG 6 cut(s) 110, 178, 795, 852, 963, 1188
HpySE526I ACGT 3 cut(s) 620, 1050, 1069
Hsp92I GRCGYC 1 cut(s) 1269
Hsp92II CATG 6 cut(s) 519, 596, 702, 897, 1047, 1086
HspAI GCGC 1 cut(s) 70
Kpn2I TCCGGA 1 cut(s) 203
KpnI GGTACC 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 471
Kzo9I GATC 2 cut(s) 932, 1292
LguI GCTCTTC 2 cut(s) 222, 1086
LmnI GCTCC 4 cut(s) 51, 106, 206, 860
Lsp1109I GCAGC 5 cut(s) 17, 158, 161, 271, 316
LweI GCATC 2 cut(s) 468, 586
MaeI CTAG 9 cut(s) 15, 81, 261, 351, 384, 659, 749, 1059, 1227
MaeII ACGT 3 cut(s) 620, 1050, 1069
MaeIII GTNAC 3 cut(s) 407, 635, 743
MalI GATC 2 cut(s) 934, 1294
MbiI CCGCTC 1 cut(s) 232
MboI GATC 2 cut(s) 932, 1292
MflI RGATCY 1 cut(s) 932
MhlI GDGCHC 4 cut(s) 772, 865, 1098, 1119
MluCI AATT 3 cut(s) 364, 1242, 1328
MlyI GAGTC 4 cut(s) 162, 176, 497, 873
MroI TCCGGA 1 cut(s) 203
MroXI GAANNNNTTC 2 cut(s) 723, 1024
MseI TTAA 2 cut(s) 470, 1245
MslI CAYNNNNRTG 3 cut(s) 732, 870, 1122
MspA1I CMGCKG 2 cut(s) 375, 1310
MspI CCGG 2 cut(s) 204, 645
MspR9I CCNGG 1 cut(s) 1266
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 1 cut(s) 1266
MvnI CGCG 3 cut(s) 70, 150, 1030
MwoI GCNNNNNNNGC 5 cut(s) 96, 115, 221, 284, 1227
NdeII GATC 2 cut(s) 932, 1292
NlaIII CATG 6 cut(s) 519, 596, 702, 897, 1047, 1086
NlaIV GGNNCC 3 cut(s) 143, 586, 979
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 407, 635
NruI TCGCGA 1 cut(s) 1030
NspV TTCGAA 1 cut(s) 245
PceI AGGCCT 1 cut(s) 256
PciSI GCTCTTC 2 cut(s) 222, 1086
PcsI WCGNNNNNNNCGW 3 cut(s) 142, 191, 311
PctI GAATGC 1 cut(s) 805
PdmI GAANNNNTTC 2 cut(s) 723, 1024
PfeI GAWTC 5 cut(s) 162, 196, 242, 695, 1223
PkrI GCNGC 9 cut(s) 7, 53, 98, 173, 176, 234, 286, 331, 1194
PleI GAGTC 4 cut(s) 161, 176, 496, 873
PpsI GAGTC 4 cut(s) 161, 176, 496, 873
Ppu21I YACGTR 1 cut(s) 1051
Psp1406I AACGTT 1 cut(s) 1069
Psp6I CCWGG 1 cut(s) 1264
PspFI CCCAGC 1 cut(s) 1149
PspGI CCWGG 1 cut(s) 1264
PspN4I GGNNCC 3 cut(s) 143, 586, 979
PspPI GGNCC 3 cut(s) 142, 395, 642
PstNI CAGNNNCTG 2 cut(s) 171, 794
PsuI RGATCY 1 cut(s) 932
PvuII CAGCTG 1 cut(s) 1310
RruI TCGCGA 1 cut(s) 1030
RsaI GTAC 4 cut(s) 85, 379, 514, 586
RsaNI GTAC 4 cut(s) 84, 378, 513, 585
RseI CAYNNNNRTG 3 cut(s) 732, 870, 1122
SapI GCTCTTC 2 cut(s) 222, 1086
SaqAI TTAA 2 cut(s) 470, 1245
SatI GCNGC 9 cut(s) 6, 52, 97, 172, 175, 233, 285, 330, 1193
Sau3AI GATC 2 cut(s) 932, 1292
Sau96I GGNCC 3 cut(s) 142, 395, 642
SchI GAGTC 4 cut(s) 162, 176, 497, 873
ScrFI CCNGG 1 cut(s) 1266
SduI GDGCHC 4 cut(s) 772, 865, 1098, 1119
SfaNI GCATC 2 cut(s) 468, 586
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 3 cut(s) 142, 395, 642
SmiMI CAYNNNNRTG 3 cut(s) 732, 870, 1122
SmlI CTYRAG 2 cut(s) 687, 1283
SmoI CTYRAG 2 cut(s) 687, 1283
Sse9I AATT 3 cut(s) 364, 1242, 1328
SseBI AGGCCT 1 cut(s) 256
SspMI CTAG 9 cut(s) 15, 81, 261, 351, 384, 659, 749, 1059, 1227
StuI AGGCCT 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 1264
TaiI ACGT 3 cut(s) 623, 1053, 1072
TaqI TCGA 5 cut(s) 36, 160, 240, 245, 523
TaqII GACCGA 1 cut(s) 159
TasI AATT 3 cut(s) 364, 1242, 1328
TatI WGTACW 1 cut(s) 512
TauI GCSGC 4 cut(s) 54, 99, 235, 1195
TfiI GAWTC 5 cut(s) 162, 196, 242, 695, 1223
Tru1I TTAA 2 cut(s) 470, 1245
Tru9I TTAA 2 cut(s) 470, 1245
TscAI CASTG 1 cut(s) 799
TseFI GTSAC 2 cut(s) 407, 635
TseI GCWGC 5 cut(s) 5, 171, 174, 284, 329
Tsp45I GTSAC 2 cut(s) 407, 635
TspDTI ATGAA 5 cut(s) 516, 687, 716, 750, 1329
TspGWI ACGGA 2 cut(s) 939, 1215
TspRI CASTG 1 cut(s) 799
VneI GTGCAC 2 cut(s) 768, 1115
VpaK11BI GGWCC 3 cut(s) 142, 395, 642
XapI RAATTY 1 cut(s) 1328
XbaI TCTAGA 2 cut(s) 14, 350
XmiI GTMKAC 2 cut(s) 877, 1272
XmnI GAANNNNTTC 2 cut(s) 723, 1024
XspI CTAG 9 cut(s) 15, 81, 261, 351, 384, 659, 749, 1059, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.