Rw6G038360

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
62506618 .. 62511335
4718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G038360.1

Sequence Viewer

Length: 1560 bp
ATGAGAAGGAAACGAAATCCCACTTATTTATTAAATTTTAGCCCCAAAACAAACAAAACCGAAGTCTCTCTTCTTGGACTCCAACAAATCAACCACACCTACGCCCAGCCTCCTCTCCTCCGCTGCCCTTGGGATTTTGGCTATGATTTCATTTTCGTAAATGCAATGGCGGCGGCCACCACCACCACTAGAGGCTTCGCGACTCACCCCAGCCACCTCTCCTTCCTCCATCACCTACCGCATCCGCACCGGAACAATGCTCACACCGCCGACGTGGACGAGCTGAGCAAGCGGTGGAGGCTCACCATCGGCGGAAACCGAGTCGGAGTGAGTCGAATCAGTTGCTGCTGTTCCGACTCGGCGGTTCCGATTCGGAGCAGCTCCCCCGCCGAGAAGAGGAACAAGTGCGATGAGCGGCGGTTCGATTCCAACAAGAGGCCTCCTCACAGAGCTGGACTCAAAGCTGCTGCTGCATTGCCCTTTGCTTCTGAGCAATCTCAATTTGCCTCCAAACAAAACAGCAAGGTGAACCCTCGCCGCCGCCCTCGCTGTACTCCGGGGACTACTGGTCCACAATCTCGTGATACTCCGCCGAAAAGAGATACTGGTATTGCCAGTGAGAAGGAATGGGGTATTAGCTTGTTAAACGAACATGTGAAGGAATCCGGCACTAATGAAGATGGAAGTACTTGGTACCGAGAAAGCGGGCAGGAGCTGGGGAACACTGGGTACAGATGTAGGTGGACAAGGATGGGTGGTGCTTCTCATGACTCCTCTTCAGAGTGGAGAGAAGAGTGGTGGGAGAAAAGTGACTGGACCGGATACAAAGAGCTAGGTGTGGAGAAATCTGGTAGAAATGCTGAAGGAGATTCATGGTGGGAAACCTGGCAAGAGGTTCTTCATCAAGATGAATGGAGTAACCTAGCAAGGATTGAGAGAAGTGCACAGAAACGAGCAAAATCAGGCACTGAAAATGCTGGATGGTCTGAGAAATGGTGGGAGAAATATGATGCCAAAGGCTGGACTGAGAAAGGAGCACACAAATGGGGTAGACTTAATGAACAGTCTTGGTGGGAGAAGTGGGGAGAGCATTATGACGGAAGGGGATCAGTTCTCAAATGGACAGATAAATGGGCAGAGACTGAACTTGGAACCAAATGGGGAGACAAGTGGGAAGAGAAGTTCTTTGAGGGTATAGGTTCACGACAAGGGGAAACATGGCATGTAACTTCCAATGATGACCGTTGGTCAAGGACATGGGGAGAAGAACACATAGGAAATGGTAAAGTGCACAAATATGGGAAGAGCACAACAGGTGAAAGCTGGGATATTGTTGTGGATGAGGAGACCTATTATGAGGCTGTGCCGCATTACGGATGGGCAGATGTTGTAGGCGATTCTACCCAGTTACTATCAATTGAACCTCGTGAAAAGCCGCCTGAGGTCTACCCAAACTTTGACTTTACGAGATCACCACCTGCAATGGGTACACCGCTTCCAGAGAATGAACCACCACCACCACCACCACCTAAAGAGGATGAACCACCTCCGGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

519

Amino Acids

59.56

Weight (kDa)

6.44

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1486
Acc36I ACCTGC 1 cut(s) 1486
Acc65I GGTACC 1 cut(s) 693
AccB1I GGYRCC 1 cut(s) 693
AccB7I CCANNNNNTGG 1 cut(s) 1020
AccBSI CCGCTC 1 cut(s) 415
AccI GTMKAC 2 cut(s) 1051, 1446
AccII CGCG 1 cut(s) 200
AccIII TCCGGA 1 cut(s) 1549
AclWI GGATC 1 cut(s) 1114
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 2 cut(s) 762, 882
AfaI GTAC 5 cut(s) 553, 688, 695, 731, 1489
AfiI CCNNNNNNNGG 5 cut(s) 396, 435, 1020, 1373, 1484
AflIII ACRYGT 1 cut(s) 652
AgsI TTSAA 1 cut(s) 1421
AhdI GACNNNNNGTC 2 cut(s) 567, 1246
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 1 cut(s) 884
AloI GAACNNNNNNTCC 2 cut(s) 1166, 1198
AluBI AGCT 8 cut(s) 283, 381, 452, 464, 639, 715, 832, 1323
AluI AGCT 8 cut(s) 283, 381, 452, 464, 639, 715, 832, 1323
Alw21I GWGCWC 4 cut(s) 946, 1039, 1293, 1310
Alw26I GTCTC 4 cut(s) 70, 1133, 1158, 1340
Alw44I GTGCAC 2 cut(s) 942, 1289
AlwI GGATC 1 cut(s) 1114
AlwNI CAGNNNCTG 4 cut(s) 345, 715, 968, 1142
Aor13HI TCCGGA 1 cut(s) 1549
AoxI GGCC 2 cut(s) 174, 437
ApaLI GTGCAC 2 cut(s) 942, 1289
ApeKI GCWGC 6 cut(s) 123, 345, 378, 464, 467, 470
ApoI RAATTY 1 cut(s) 34
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
Asp718I GGTACC 1 cut(s) 693
AspS9I GGNCC 2 cut(s) 569, 816
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 6 cut(s) 197, 224, 295, 538, 1328, 1464
AvaII GGWCC 2 cut(s) 569, 816
AxyI CCTNAGG 1 cut(s) 1440
BaeGI GKGCMC 2 cut(s) 946, 1293
BaeI ACNNNNGTAYC 2 cut(s) 721, 754
BanI GGYRCC 1 cut(s) 693
BauI CACGAG 2 cut(s) 579, 1425
Bbv12I GWGCWC 4 cut(s) 946, 1039, 1293, 1310
BbvI GCAGC 6 cut(s) 110, 332, 390, 451, 454, 457
BccI CCATC 6 cut(s) 237, 314, 674, 745, 975, 1371
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BciT130I CCWGG 1 cut(s) 886
BciVI GTATCC 1 cut(s) 815
BcnI CCSGG 1 cut(s) 558
BcoDI GTCTC 4 cut(s) 70, 1133, 1158, 1340
BfaI CTAG 3 cut(s) 189, 833, 923
BfuAI ACCTGC 1 cut(s) 1486
BfuI GTATCC 1 cut(s) 815
BlpI GCTNAGC 1 cut(s) 284
BmcAI AGTACT 1 cut(s) 688
Bme1390I CCNGG 2 cut(s) 558, 886
Bme18I GGWCC 2 cut(s) 569, 816
BmeRI GACNNNNNGTC 2 cut(s) 567, 1246
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 569, 816
BmiI GGNNCC 3 cut(s) 366, 695, 1153
BmrFI CCNGG 2 cut(s) 558, 886
BmrI ACTGGG 2 cut(s) 735, 1399
BmsI GCATC 2 cut(s) 250, 1000
BmuI ACTGGG 2 cut(s) 735, 1399
BplI GAGNNNNNCTC 4 cut(s) 427, 459, 441, 473
Bpu1102I GCTNAGC 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 1340
BsaJI CCNNGG 2 cut(s) 128, 557
BsaWI WCCGGW 3 cut(s) 249, 818, 1549
Bsc4I CCNNNNNNNGG 5 cut(s) 396, 435, 1020, 1373, 1484
Bse1I ACTGG 6 cut(s) 571, 610, 615, 730, 818, 1405
Bse21I CCTNAGG 1 cut(s) 1440
Bse3DI GCAATG 3 cut(s) 171, 473, 1488
BseAI TCCGGA 1 cut(s) 1549
BseBI CCWGG 1 cut(s) 886
BseDI CCNNGG 2 cut(s) 128, 557
BseGI GGATG 6 cut(s) 241, 756, 986, 1345, 1382, 1543
BseLI CCNNNNNNNGG 5 cut(s) 396, 435, 1020, 1373, 1484
BseMI GCAATG 3 cut(s) 171, 473, 1488
BseMII CTCAG 5 cut(s) 275, 480, 978, 1017, 1431
BseNI ACTGG 6 cut(s) 571, 610, 615, 730, 818, 1405
BseRI GAGGAG 5 cut(s) 102, 107, 432, 763, 1358
BseSI GKGCMC 2 cut(s) 946, 1293
BseXI GCAGC 6 cut(s) 110, 332, 390, 451, 454, 457
BseYI CCCAGC 4 cut(s) 105, 209, 715, 1323
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 176, 439
BshNI GGYRCC 1 cut(s) 693
BsiHKAI GWGCWC 4 cut(s) 946, 1039, 1293, 1310
BsiSI CCGG 5 cut(s) 250, 557, 666, 819, 1550
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 5 cut(s) 396, 435, 1020, 1373, 1484
BsmAI GTCTC 4 cut(s) 70, 1133, 1158, 1340
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 2 cut(s) 176, 439
Bso31I GGTCTC 1 cut(s) 1340
Bsp1286I GDGCHC 4 cut(s) 946, 1039, 1293, 1310
Bsp13I TCCGGA 1 cut(s) 1549
Bsp143I GATC 2 cut(s) 1106, 1469
Bsp1720I GCTNAGC 1 cut(s) 284
Bsp68I TCGCGA 1 cut(s) 200
BspANI GGCC 2 cut(s) 176, 439
BspCNI CTCAG 5 cut(s) 276, 481, 979, 1018, 1432
BspEI TCCGGA 1 cut(s) 1549
BspFNI CGCG 1 cut(s) 200
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 3 cut(s) 366, 695, 1153
BspMI ACCTGC 1 cut(s) 1486
BspPI GGATC 1 cut(s) 1114
BspQI GCTCTTC 1 cut(s) 1298
BspT107I GGYRCC 1 cut(s) 693
BspTNI GGTCTC 1 cut(s) 1340
BsrBI CCGCTC 1 cut(s) 415
BsrDI GCAATG 3 cut(s) 171, 473, 1488
BsrI ACTGG 6 cut(s) 571, 610, 615, 730, 818, 1405
BssECI CCNNGG 2 cut(s) 128, 557
BssMI GATC 2 cut(s) 1106, 1469
BssSI CACGAG 2 cut(s) 579, 1425
BssT1I CCWWGG 1 cut(s) 128
Bst2BI CACGAG 2 cut(s) 579, 1425
Bst2UI CCWGG 1 cut(s) 886
Bst4CI ACNGT 2 cut(s) 1065, 1244
Bst6I CTCTTC 6 cut(s) 75, 389, 781, 786, 1170, 1298
BstC8I GCNNGC 2 cut(s) 290, 707
BstDEI CTNAG 5 cut(s) 284, 489, 987, 1026, 1440
BstF5I GGATG 6 cut(s) 241, 756, 986, 1345, 1382, 1543
BstFNI CGCG 1 cut(s) 200
BstKTI GATC 2 cut(s) 1109, 1472
BstMAI GTCTC 4 cut(s) 70, 1133, 1158, 1340
BstMBI GATC 2 cut(s) 1106, 1469
BstMWI GCNNNNNNNGC 6 cut(s) 170, 266, 289, 298, 470, 546
BstNI CCWGG 1 cut(s) 886
BstNSI RCATGY 2 cut(s) 656, 1226
BstSCI CCNGG 2 cut(s) 556, 884
BstSLI GKGCMC 2 cut(s) 946, 1293
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 6 cut(s) 110, 332, 390, 451, 454, 457
Bsu36I CCTNAGG 1 cut(s) 1440
BsuI GTATCC 1 cut(s) 815
BsuRI GGCC 2 cut(s) 176, 439
BtgZI GCGATG 1 cut(s) 423
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 6 cut(s) 241, 756, 986, 1345, 1382, 1543
BtsIMutI CAGTG 3 cut(s) 622, 723, 966
BtuMI TCGCGA 1 cut(s) 200
BveI ACCTGC 1 cut(s) 1486
Cac8I GCNNGC 2 cut(s) 290, 707
CaiI CAGNNNCTG 4 cut(s) 345, 715, 968, 1142
CciI TCATGA 1 cut(s) 766
Cfr13I GGNCC 2 cut(s) 569, 816
Csp6I GTAC 5 cut(s) 552, 687, 694, 730, 1488
CviAII CATG 6 cut(s) 653, 767, 873, 1218, 1223, 1257
CviQI GTAC 5 cut(s) 552, 687, 694, 730, 1488
DdeI CTNAG 5 cut(s) 284, 489, 987, 1026, 1440
DpnI GATC 2 cut(s) 1108, 1471
DpnII GATC 2 cut(s) 1106, 1469
DriI GACNNNNNGTC 2 cut(s) 567, 1246
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 6 cut(s) 75, 389, 781, 786, 1170, 1298
Eam1105I GACNNNNNGTC 2 cut(s) 567, 1246
EarI CTCTTC 6 cut(s) 75, 389, 781, 786, 1170, 1298
EciI GGCGGA 2 cut(s) 327, 579
Eco130I CCWWGG 1 cut(s) 128
Eco147I AGGCCT 1 cut(s) 439
Eco31I GGTCTC 1 cut(s) 1340
Eco47I GGWCC 2 cut(s) 569, 816
Eco57I CTGAAG 2 cut(s) 762, 882
Eco81I CCTNAGG 1 cut(s) 1440
EcoRII CCWGG 1 cut(s) 884
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 6 cut(s) 656, 770, 876, 1221, 1226, 1260
FalI AAGNNNNNCTT 4 cut(s) 54, 86, 882, 914
FaqI GGGAC 1 cut(s) 574
FatI CATG 6 cut(s) 652, 766, 872, 1217, 1222, 1256
FauI CCCGC 2 cut(s) 394, 698
FblI GTMKAC 2 cut(s) 1051, 1446
FokI GGATG 6 cut(s) 228, 763, 993, 1352, 1389, 1550
FspBI CTAG 3 cut(s) 189, 833, 923
GsaI CCCAGC 4 cut(s) 109, 213, 719, 1327
HaeIII GGCC 2 cut(s) 176, 439
HapII CCGG 5 cut(s) 250, 557, 666, 819, 1550
Hin1II CATG 6 cut(s) 656, 770, 876, 1221, 1226, 1260
HpaII CCGG 5 cut(s) 250, 557, 666, 819, 1550
HphI GGTGA 6 cut(s) 197, 224, 295, 538, 1328, 1464
Hpy188I TCNGA 7 cut(s) 326, 355, 369, 375, 490, 781, 988
Hpy188III TCNNGA 8 cut(s) 199, 581, 767, 905, 1203, 1427, 1499, 1550
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 5 cut(s) 232, 616, 652, 857, 1095
HpyCH4III ACNGT 2 cut(s) 1065, 1244
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 5 cut(s) 164, 473, 944, 1291, 1481
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 266, 289, 298, 470, 546
HpyF3I CTNAG 5 cut(s) 284, 489, 987, 1026, 1440
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 6 cut(s) 656, 770, 876, 1221, 1226, 1260
Kpn2I TCCGGA 1 cut(s) 1549
KpnI GGTACC 1 cut(s) 697
Kzo9I GATC 2 cut(s) 1106, 1469
LguI GCTCTTC 1 cut(s) 1298
LmnI GCTCC 4 cut(s) 375, 386, 712, 1034
Lsp1109I GCAGC 6 cut(s) 110, 332, 390, 451, 454, 457
LweI GCATC 2 cut(s) 250, 1000
MaeI CTAG 3 cut(s) 189, 833, 923
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 4 cut(s) 809, 917, 1225, 1407
MalI GATC 2 cut(s) 1108, 1471
MbiI CCGCTC 1 cut(s) 415
MboI GATC 2 cut(s) 1106, 1469
MboII GAAGA 9 cut(s) 62, 406, 689, 768, 803, 890, 1187, 1277, 1315
MfeI CAATTG 1 cut(s) 1416
MhlI GDGCHC 4 cut(s) 946, 1039, 1293, 1310
MluCI AATT 3 cut(s) 34, 500, 1416
MlyI GAGTC 7 cut(s) 72, 196, 330, 340, 350, 450, 764
MmeI TCCRAC 4 cut(s) 106, 304, 378, 453
MroI TCCGGA 1 cut(s) 1549
MseI TTAA 4 cut(s) 32, 644, 1056, 1558
MslI CAYNNNNRTG 3 cut(s) 906, 1042, 1296
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 5 cut(s) 250, 557, 666, 819, 1550
MspR9I CCNGG 2 cut(s) 558, 886
MunI CAATTG 1 cut(s) 1416
MvaI CCWGG 1 cut(s) 886
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 6 cut(s) 170, 266, 289, 298, 470, 546
NciI CCSGG 1 cut(s) 558
NdeII GATC 2 cut(s) 1106, 1469
NlaIII CATG 6 cut(s) 656, 770, 876, 1221, 1226, 1260
NlaIV GGNNCC 3 cut(s) 366, 695, 1153
NmeAIII GCCGAG 2 cut(s) 338, 415
NmuCI GTSAC 1 cut(s) 809
NruI TCGCGA 1 cut(s) 200
NspI RCATGY 2 cut(s) 656, 1226
PagI TCATGA 1 cut(s) 766
PaqCI CACCTGC 1 cut(s) 1486
PceI AGGCCT 1 cut(s) 439
PciI ACATGT 1 cut(s) 652
PciSI GCTCTTC 1 cut(s) 1298
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PfeI GAWTC 6 cut(s) 336, 370, 425, 662, 869, 1397
PflMI CCANNNNNTGG 1 cut(s) 1020
PleI GAGTC 7 cut(s) 72, 196, 329, 339, 350, 450, 764
PpsI GAGTC 7 cut(s) 72, 196, 329, 339, 350, 450, 764
PscI ACATGT 1 cut(s) 652
Psp6I CCWGG 1 cut(s) 884
PspFI CCCAGC 4 cut(s) 105, 209, 715, 1323
PspGI CCWGG 1 cut(s) 884
PspN4I GGNNCC 3 cut(s) 366, 695, 1153
PspPI GGNCC 2 cut(s) 569, 816
PsrI GAACNNNNNNTAC 2 cut(s) 713, 745
PstNI CAGNNNCTG 4 cut(s) 345, 715, 968, 1142
RruI TCGCGA 1 cut(s) 200
RsaI GTAC 5 cut(s) 553, 688, 695, 731, 1489
RsaNI GTAC 5 cut(s) 552, 687, 694, 730, 1488
RseI CAYNNNNRTG 3 cut(s) 906, 1042, 1296
SapI GCTCTTC 1 cut(s) 1298
SaqAI TTAA 4 cut(s) 32, 644, 1056, 1558
Sau3AI GATC 2 cut(s) 1106, 1469
Sau96I GGNCC 2 cut(s) 569, 816
ScaI AGTACT 1 cut(s) 688
SchI GAGTC 7 cut(s) 72, 196, 330, 340, 350, 450, 764
ScrFI CCNGG 2 cut(s) 558, 886
SduI GDGCHC 4 cut(s) 946, 1039, 1293, 1310
SfaNI GCATC 2 cut(s) 250, 1000
SinI GGWCC 2 cut(s) 569, 816
SmiMI CAYNNNNRTG 3 cut(s) 906, 1042, 1296
Sse9I AATT 3 cut(s) 34, 500, 1416
SseBI AGGCCT 1 cut(s) 439
SspMI CTAG 3 cut(s) 189, 833, 923
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 2 cut(s) 556, 884
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 2 cut(s) 1065, 1244
TaiI ACGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 334, 423
TasI AATT 3 cut(s) 34, 500, 1416
TatI WGTACW 2 cut(s) 551, 686
TauI GCSGC 7 cut(s) 173, 176, 418, 540, 543, 1369, 1438
TfiI GAWTC 6 cut(s) 336, 370, 425, 662, 869, 1397
Tru1I TTAA 4 cut(s) 32, 644, 1056, 1558
Tru9I TTAA 4 cut(s) 32, 644, 1056, 1558
TscAI CASTG 3 cut(s) 622, 730, 973
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 6 cut(s) 123, 345, 378, 464, 467, 470
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 8 cut(s) 139, 690, 861, 890, 924, 1074, 1521, 1554
TspGWI ACGGA 2 cut(s) 1113, 1389
TspRI CASTG 3 cut(s) 622, 730, 973
Van91I CCANNNNNTGG 1 cut(s) 1020
VneI GTGCAC 2 cut(s) 942, 1289
VpaK11BI GGWCC 2 cut(s) 569, 816
XapI RAATTY 1 cut(s) 34
XceI RCATGY 2 cut(s) 656, 1226
XmiI GTMKAC 2 cut(s) 1051, 1446
XspI CTAG 3 cut(s) 189, 833, 923
ZrmI AGTACT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.