Rorug06G0328600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005878
Physical Location & Seq
Forward (+)
48144604 .. 48145940
1337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0328600.1

Sequence Viewer

Length: 966 bp
ATGACTTCCACTACTGTCTGTCATCAAGAGCTTCAACCCTGTGTTGAGTCTCTTGTTAGGCTCCAATTGGTACCGCCAAGGCCTAAACTCTCCATTTCTGAACCCCAAGAAATTGGAAAATCCAGTGACAAACCTAGCTGGAGCTTCCTCCAGTCTTTCACCACCACAATTCAGACCCCCAAAACAGAGACTGAAACAGAGAAGGTCTATGTCCACCCTCTTGTGAAACGCTCAGCTTCGGTGCTCAGCCCCAAAAGCCTGGCAATGTGCACTGAAAGCTTGGGCAGCGAGACGGGAAGCGATGCGAGCAGTGGTGACATGTCTTTTCTGCTTCAAAAGAACGACATTCCTTTGTTGTCACTTGAAGCTGAGAAAACCCAAACATTCTCTGCTACAAAACAGACTAATGTAGAAACCCGAAAACTGAGTGACAGTGTTCAAGCACCAAAGAGATTGAATCGTAGTTTTAATGGTGGGAATAATTTTCCTCCACCTTTAACTTCTATCGGTGGCTCCAATGGTGTTCAATTTTTGCCTCACCGTGAAGGAGGCAGGCTTGTTCTGAAAGCCGTTCCTGTCACTTCTCCTGCAAACTATTTCAAAGTGGAGCGCGGCGATGGGCGGCTCAGGCTTCAGTTGTTGAGGGATATGACTCTGAATTCTGACACTAATGAGGAGGTTGAAGATGCCGAAGAAGAAGAAGAAGATGAGGTTGTTAGAGAAGAGGAAGTGGTTGAAGAAATAATGGGAGTTGAGACTGAAACATGTCGGGAGGAAATGGAAGTGGAGGAAAAGAGTGGTGGCTATTGGGAAACAGAGGAGGAGGACACGGAAGGAAATAGTGGGAGTGTTGTGGGTGAAACGGGAATGGAGAAGAAGCTTCCTAGCCGTTGCAAGGAAAGCCGGCGTGGTAACAACAAAATGGTTATGAATTGGCCGCCGGAGTCGTTCTGGGTCGCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.71

Weight (kDa)

4.77

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 161 - 213 3.8e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 1 cut(s) 612
AciI CCGC 4 cut(s) 74, 612, 622, 938
AcoI YGGCCR 1 cut(s) 935
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 895
AflIII ACRYGT 2 cut(s) 318, 764
AgsI TTSAA 9 cut(s) 35, 335, 365, 440, 457, 527, 601, 683, 737
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 7 cut(s) 31, 138, 144, 236, 279, 368, 880
AluI AGCT 7 cut(s) 31, 138, 144, 236, 279, 368, 880
Alw21I GWGCWC 2 cut(s) 246, 272
Alw26I GTCTC 4 cut(s) 54, 182, 284, 749
Alw44I GTGCAC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 2 cut(s) 80, 935
ApaLI GTGCAC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 658
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 612
AsuHPI GGTGA 4 cut(s) 151, 326, 530, 869
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 246, 272
BbvI GCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 611
BceAI ACGGC 2 cut(s) 554, 873
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 4 cut(s) 54, 182, 284, 749
BfaI CTAG 2 cut(s) 135, 885
BisI GCNGC 4 cut(s) 286, 613, 623, 938
BlpI GCTNAGC 2 cut(s) 232, 245
BlsI GCNGC 4 cut(s) 287, 614, 624, 939
Bme1390I CCNGG 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 62, 72, 514
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 292, 676
BpmI CTGGAG 2 cut(s) 134, 160
Bpu10I CCTNAGC 1 cut(s) 626
Bpu1102I GCTNAGC 2 cut(s) 232, 245
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 895
Bse118I RCCGGY 1 cut(s) 903
Bse1I ACTGG 2 cut(s) 123, 151
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 895
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 5 cut(s) 246, 259, 360, 416, 640
BseNI ACTGG 2 cut(s) 123, 151
BseRI GAGGAG 3 cut(s) 689, 833, 836
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 2 cut(s) 82, 937
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 246, 272
BsiSI CCGG 2 cut(s) 904, 941
BslI CCNNNNNNNGG 1 cut(s) 895
BsmAI GTCTC 4 cut(s) 54, 182, 284, 749
BsmBI CGTCTC 1 cut(s) 284
BsnI GGCC 2 cut(s) 82, 937
Bsp1286I GDGCHC 2 cut(s) 246, 272
Bsp1720I GCTNAGC 2 cut(s) 232, 245
BspACI CCGC 4 cut(s) 74, 612, 622, 938
BspANI GGCC 2 cut(s) 82, 937
BspCNI CTCAG 5 cut(s) 245, 258, 361, 417, 639
BspFNI CGCG 1 cut(s) 612
BspLI GGNNCC 3 cut(s) 62, 72, 514
BspT107I GGYRCC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 903
BsrI ACTGG 2 cut(s) 123, 151
BssAI RCCGGY 1 cut(s) 903
BssECI CCNNGG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 16, 434, 542
Bst6I CTCTTC 1 cut(s) 717
BstC8I GCNNGC 3 cut(s) 307, 554, 905
BstDEI CTNAG 5 cut(s) 232, 245, 369, 425, 626
BstFNI CGCG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 612
BstMAI GTCTC 4 cut(s) 54, 182, 284, 749
BstMWI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 900
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 2 cut(s) 322, 768
BstSCI CCNGG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 1 cut(s) 297
BstXI CCANNNNNNTGG 2 cut(s) 113, 259
BsuRI GGCC 2 cut(s) 82, 937
BtgZI GCGATG 2 cut(s) 315, 630
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 4 cut(s) 130, 270, 316, 439
Cac8I GCNNGC 3 cut(s) 307, 554, 905
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 903
Csp6I GTAC 1 cut(s) 71
CviAII CATG 2 cut(s) 319, 765
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 5 cut(s) 232, 245, 369, 425, 626
EaeI YGGCCR 1 cut(s) 935
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Eco130I CCWWGG 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 2 cut(s) 322, 768
FaiI YATR 5 cut(s) 210, 320, 650, 766, 929
FatI CATG 2 cut(s) 318, 764
Fnu4HI GCNGC 4 cut(s) 286, 613, 623, 938
Fsp4HI GCNGC 4 cut(s) 286, 613, 623, 938
FspBI CTAG 2 cut(s) 135, 885
GlaI GCGC 1 cut(s) 611
GluI GCNGC 4 cut(s) 286, 613, 623, 938
GsuI CTGGAG 2 cut(s) 134, 160
HaeIII GGCC 2 cut(s) 82, 937
HapII CCGG 2 cut(s) 904, 941
HhaI GCGC 1 cut(s) 612
Hin1II CATG 2 cut(s) 322, 768
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HindIII AAGCTT 2 cut(s) 277, 878
HinfI GANTC 4 cut(s) 47, 457, 652, 944
HpaII CCGG 2 cut(s) 904, 941
HphI GGTGA 4 cut(s) 151, 326, 530, 869
Hpy166II GTNNAC 2 cut(s) 214, 270
Hpy188I TCNGA 5 cut(s) 100, 174, 564, 657, 664
Hpy188III TCNNGA 2 cut(s) 26, 770
Hpy8I GTNNAC 2 cut(s) 214, 270
HpyAV CCTTC 3 cut(s) 196, 539, 827
HpyCH4III ACNGT 3 cut(s) 16, 434, 542
HpyCH4V TGCA 3 cut(s) 270, 590, 894
HpyF10VI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 900
HpyF3I CTNAG 5 cut(s) 232, 245, 369, 425, 626
Hsp92II CATG 2 cut(s) 322, 768
HspAI GCGC 1 cut(s) 610
KpnI GGTACC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 903
KroNI GCCGGC 1 cut(s) 905
LmnI GCTCC 4 cut(s) 66, 141, 518, 607
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 292, 676
MaeI CTAG 2 cut(s) 135, 885
MaeIII GTNAC 6 cut(s) 125, 314, 357, 428, 577, 911
MboII GAAGA 9 cut(s) 695, 704, 707, 710, 713, 716, 734, 749, 886
MfeI CAATTG 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 246, 272
MluCI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 931
MlyI GAGTC 3 cut(s) 56, 646, 953
MroNI GCCGGC 1 cut(s) 903
MseI TTAA 2 cut(s) 468, 497
MspI CCGG 2 cut(s) 904, 941
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 6 cut(s) 255, 276, 285, 306, 628, 900
NaeI GCCGGC 1 cut(s) 905
NgoMIV GCCGGC 1 cut(s) 903
NlaIII CATG 2 cut(s) 322, 768
NlaIV GGNNCC 3 cut(s) 62, 72, 514
NmuCI GTSAC 5 cut(s) 125, 314, 357, 428, 577
NspI RCATGY 2 cut(s) 322, 768
PceI AGGCCT 1 cut(s) 82
PciI ACATGT 2 cut(s) 318, 764
PdiI GCCGGC 1 cut(s) 905
PfeI GAWTC 1 cut(s) 457
PkrI GCNGC 4 cut(s) 287, 614, 624, 939
PleI GAGTC 3 cut(s) 55, 646, 952
PpsI GAGTC 3 cut(s) 55, 646, 952
PscI ACATGT 2 cut(s) 318, 764
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 62, 72, 514
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 468, 497
SatI GCNGC 4 cut(s) 286, 613, 623, 938
SchI GAGTC 3 cut(s) 56, 646, 953
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 246, 272
SfaNI GCATC 2 cut(s) 292, 676
Sse9I AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 931
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 4 cut(s) 74, 612, 622, 938
SspMI CTAG 2 cut(s) 135, 885
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 3 cut(s) 16, 434, 542
TasI AATT 7 cut(s) 65, 111, 168, 481, 527, 658, 931
TauI GCSGC 3 cut(s) 615, 625, 940
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 468, 497
Tru9I TTAA 2 cut(s) 468, 497
TscAI CASTG 4 cut(s) 130, 277, 316, 439
TseFI GTSAC 5 cut(s) 125, 314, 357, 428, 577
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 5 cut(s) 125, 314, 357, 428, 577
TspDTI ATGAA 1 cut(s) 944
TspGWI ACGGA 1 cut(s) 845
TspRI CASTG 4 cut(s) 130, 277, 316, 439
VneI GTGCAC 1 cut(s) 268
XapI RAATTY 1 cut(s) 658
XceI RCATGY 2 cut(s) 322, 768
XspI CTAG 2 cut(s) 135, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.