MD11G1103700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0005878
Physical Location & Seq
Reverse (-)
8785672 .. 8789839
4168 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1103700.v1.1.491

Sequence Viewer

Length: 363 bp
ATGCGATCAAAAAGCTTGATGGCTCTGAGTTCCGAAATGCTTTTGACCGCCAATCTGTTCGCGTTGGTCAAGGACATGAGGAGAAGAGCACTTTGGAAATGGGTGCACAAATATGGGAAAAGCACGACAGGGGAAAGCTGGGATATTGTTGTGGATGAGGAGACCTATTACGAGGCTGAGCCGCATTACGGGTGGGCAGATGTCGTTGGTGACTCTAGCCAATTGCTGTCAATTAAACCTCGAGAAAGGCCACCTGGCTTCTACCCCGCTCTTGATTTTGGATCATCATCGCCTTCAATTGATGAACCACCAGATGAATTTTCTCCAATATCGTGCGGCTCAAAGGATTTTGCTGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.45

Weight (kDa)

4.95

Isoelectric Point (pI)

59.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 269
AccII CGCG 1 cut(s) 62
AciI CCGC 4 cut(s) 48, 182, 267, 336
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 297
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 2 cut(s) 15, 138
AluI AGCT 2 cut(s) 15, 138
Alw21I GWGCWC 2 cut(s) 91, 108
Alw26I GTCTC 1 cut(s) 155
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 1 cut(s) 248
ApaLI GTGCAC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 108
Bbv12I GWGCWC 2 cut(s) 91, 108
BccI CCATC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 182, 337
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 2 cut(s) 183, 338
Bme1390I CCNGG 1 cut(s) 255
BmeT110I CYCGRG 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 286
BseBI CCWGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 17, 168
BseRI GAGGAG 2 cut(s) 94, 173
BseSI GKGCMC 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 250
BsiHKAI GWGCWC 2 cut(s) 91, 108
BsiHKCI CYCGRG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 250
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 91, 108
Bsp143I GATC 2 cut(s) 5, 281
Bsp1720I GCTNAGC 1 cut(s) 177
BspACI CCGC 4 cut(s) 48, 182, 267, 336
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 2 cut(s) 18, 169
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 359
BspPI GGATC 1 cut(s) 289
BspQI GCTCTTC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 269
BssMI GATC 2 cut(s) 5, 281
Bst2UI CCWGG 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 26, 177
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 2 cut(s) 8, 284
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 5, 281
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 1 cut(s) 62
BsuRI GGCC 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 1 cut(s) 160
CciI TCATGA 1 cut(s) 359
CviAII CATG 2 cut(s) 76, 360
CviJI RGCY 9 cut(s) 15, 23, 138, 176, 181, 219, 250, 258, 339
CviKI_1 RGCY 9 cut(s) 15, 23, 138, 176, 181, 219, 250, 258, 339
DdeI CTNAG 2 cut(s) 26, 177
DpnI GATC 2 cut(s) 7, 283
DpnII GATC 2 cut(s) 5, 281
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 253
FaeI CATG 2 cut(s) 79, 363
FaiI YATR 3 cut(s) 77, 114, 361
FatI CATG 2 cut(s) 75, 359
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 182, 337
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 182, 337
FspBI CTAG 1 cut(s) 216
GluI GCNGC 2 cut(s) 182, 337
GsaI CCCAGC 1 cut(s) 142
HaeIII GGCC 1 cut(s) 250
Hin1II CATG 2 cut(s) 79, 363
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 1 cut(s) 212
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 27, 34
Hpy188III TCNNGA 3 cut(s) 242, 272, 360
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 303
HpyCH4V TGCA 1 cut(s) 106
HpyF3I CTNAG 2 cut(s) 26, 177
Hsp92II CATG 2 cut(s) 79, 363
Kzo9I GATC 2 cut(s) 5, 281
LguI GCTCTTC 1 cut(s) 79
LpnPI CCDG 6 cut(s) 114, 124, 240, 267, 324, 339
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 209
MalI GATC 2 cut(s) 7, 283
MbiI CCGCTC 1 cut(s) 269
MboI GATC 2 cut(s) 5, 281
MboII GAAGA 1 cut(s) 96
MfeI CAATTG 2 cut(s) 221, 297
MhlI GDGCHC 2 cut(s) 91, 108
MluCI AATT 4 cut(s) 221, 231, 297, 317
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 4 cut(s) 72, 151, 166, 249
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 255
MunI CAATTG 2 cut(s) 221, 297
MvaI CCWGG 1 cut(s) 255
MvnI CGCG 1 cut(s) 62
NdeII GATC 2 cut(s) 5, 281
NlaIII CATG 2 cut(s) 79, 363
NmuCI GTSAC 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 240
PagI TCATGA 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 183, 338
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 138
PspGI CCWGG 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 2 cut(s) 182, 337
Sau3AI GATC 2 cut(s) 5, 281
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 2 cut(s) 91, 108
SetI ASST 5 cut(s) 17, 140, 167, 241, 256
Sfr274I CTCGAG 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 4 cut(s) 221, 231, 297, 317
SsiI CCGC 4 cut(s) 48, 182, 267, 336
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 253
TaqI TCGA 1 cut(s) 241
TasI AATT 4 cut(s) 221, 231, 297, 317
TauI GCSGC 2 cut(s) 184, 339
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 318, 330, 348
VneI GTGCAC 1 cut(s) 104
XapI RAATTY 1 cut(s) 317
XhoI CTCGAG 1 cut(s) 240
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.