Rh6DG441900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005878
Physical Location & Seq
Forward (+)
61751002 .. 61756733
5732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG441900.1

Sequence Viewer

Length: 1389 bp
ATGGCGGCGGCCACCACCACCACCACTAGAGGCTTCGCGACTCACCCCAGCCGCCTCTCCTTCCTCCATCATCTACCGCATCCGCACCGGAACAATGCTCACACCGCCGACGTGGACGAGCTGAGCAAGCGGCGGAGGCTCACCATCGGCGGAAACCGAGTCGGAGTGAGTCGAATCAGTTGCTGCTGTTCCGACTCGGCGGTTCCGATTCGGAGTAGCTCCCCCGCCGAGAAGAGGAACAAGTGCGATGAGCGGCGGTTCGATTCCAACAAGAGGCCTCCTCACAGAGCTGGACTCAAAGCTGCTGCTGCATTGCCCTTTGCTTCTGAGCAATCTCAATTTGCCTCCAAACAAAACAGCAAGGTGTACCCTCGCCGGCGCCCTCGCTGTACTCCGGGAAATACTGGTCCACAATCTCGTGATACTCCGCCGAAAAGAGATACTGGTATTGCCAGTGAGAAGGAATGGGGTATTAGCTTGTTAAACGAACATGTGAAGGAATCCGGCACTAATGAAGATGGAAGTACTTGGTACCGAGAAAGCGGGGAGGAGCTGGGGAACACTGGGTACAGATGTAGGTGGACAAGGATGGGTGGTGCTTCTCATGACTCCTCTTCAGAGTGGAGAGAAGAGTGGTGGGAGAAAAGTGACTGGACCGGATACAAAGAGCTAGGTGTGGAGAAATCTGGTAGAAATGCTGAAGGGGATTCATGGTGGGAAACCTGGCAAGAGGTTCTTCATCAAGATGAATGGAGTAACCTAGCAAGGATTGAGAGAAGTGCACAGAAACGAGCAAAATCAGGCACTGAAAATGCTGGATGGTCTGAGAAATGGTGGGAGAAATATGATGCCAAAGGCTGGACTGAGAAAGGAGCACACAAATGGGGTAGACTTAATGAACAGTCTTGGTGGGAGAAGTGGGGAGAGCATTATGACGGAAGGGGATCAGTTCTCAAATGGACAGATAAATGGGCAGAGACTGAACTTGGAACCAAATGGGGAGACAAGTGGGAAGAGAAGTTCTTTGAGGGTATAGGTTCACGACAAGGGGAAACATGGCATGTTACTTCCAATGATGAACGTTGGTCAAGGACATGGGGAGAAGAACACATAGGAAATGGCAAAGTGCACAAATATGGGAAGAGCACAACAGGTGAAAGCTGGGATATTGTTGTGGATGAGGAGACCTATTACGAGGCTGTGCCGCATTACGGATGGGCAGATGTTGTAGGCGATTCTACCCAGTTACTATCAATTGAACCTCGTGAAAAGCCGCCTGAGGTCTACCCAAACTTTGACTTTACGAGATCACCACCTGCAATGGGTACACCGCTTCCAGAGAATGAACCACCACCACCTACAGAGGATGAACCACCTCCGGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

462

Amino Acids

52.91

Weight (kDa)

6.03

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1324
Acc36I ACCTGC 1 cut(s) 1324
Acc65I GGTACC 1 cut(s) 531
AccB1I GGYRCC 2 cut(s) 378, 531
AccB7I CCANNNNNTGG 1 cut(s) 858
AccBSI CCGCTC 1 cut(s) 253
AccI GTMKAC 2 cut(s) 889, 1284
AccII CGCG 1 cut(s) 38
AccIII TCCGGA 1 cut(s) 1378
AclI AACGTT 1 cut(s) 1081
AclWI GGATC 1 cut(s) 952
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 600, 720
AcyI GRCGYC 1 cut(s) 379
AfaI GTAC 6 cut(s) 368, 391, 526, 533, 569, 1327
AfiI CCNNNNNNNGG 5 cut(s) 234, 273, 858, 1211, 1322
AflIII ACRYGT 1 cut(s) 490
AgsI TTSAA 1 cut(s) 1259
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 722
AloI GAACNNNNNNTCC 2 cut(s) 1004, 1036
AluBI AGCT 8 cut(s) 121, 219, 290, 302, 477, 553, 670, 1161
AluI AGCT 8 cut(s) 121, 219, 290, 302, 477, 553, 670, 1161
Alw21I GWGCWC 4 cut(s) 784, 877, 1131, 1148
Alw26I GTCTC 3 cut(s) 971, 996, 1178
Alw44I GTGCAC 2 cut(s) 780, 1127
AlwI GGATC 1 cut(s) 952
AlwNI CAGNNNCTG 3 cut(s) 183, 806, 980
Aor13HI TCCGGA 1 cut(s) 1378
AoxI GGCC 2 cut(s) 9, 275
ApaLI GTGCAC 2 cut(s) 780, 1127
ApeKI GCWGC 4 cut(s) 183, 302, 305, 308
Asp718I GGTACC 1 cut(s) 531
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 407, 654
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 4 cut(s) 35, 133, 1166, 1302
AvaII GGWCC 2 cut(s) 407, 654
AxyI CCTNAGG 1 cut(s) 1278
BaeGI GKGCMC 2 cut(s) 784, 1131
BaeI ACNNNNGTAYC 2 cut(s) 559, 592
BanI GGYRCC 2 cut(s) 378, 531
BauI CACGAG 2 cut(s) 417, 1263
Bbv12I GWGCWC 4 cut(s) 784, 877, 1131, 1148
BbvI GCAGC 4 cut(s) 170, 289, 292, 295
BccI CCATC 6 cut(s) 75, 152, 512, 583, 813, 1209
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 1 cut(s) 724
BciVI GTATCC 1 cut(s) 653
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 3 cut(s) 971, 996, 1178
BfaI CTAG 3 cut(s) 27, 671, 761
BfmI CTRYAG 1 cut(s) 1359
BfoI RGCGCY 1 cut(s) 382
BfuAI ACCTGC 1 cut(s) 1324
BfuI GTATCC 1 cut(s) 653
BlpI GCTNAGC 1 cut(s) 122
BmcAI AGTACT 1 cut(s) 526
Bme1390I CCNGG 2 cut(s) 396, 724
Bme18I GGWCC 2 cut(s) 407, 654
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 407, 654
BmiI GGNNCC 4 cut(s) 204, 380, 533, 991
BmrFI CCNGG 2 cut(s) 396, 724
BmrI ACTGGG 2 cut(s) 573, 1237
BmsI GCATC 2 cut(s) 88, 838
BmuI ACTGGG 2 cut(s) 573, 1237
BplI GAGNNNNNCTC 4 cut(s) 265, 297, 279, 311
Bpu1102I GCTNAGC 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 379
BsaI GGTCTC 1 cut(s) 1178
BsaWI WCCGGW 3 cut(s) 87, 656, 1378
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 273, 858, 1211, 1322
Bse118I RCCGGY 1 cut(s) 375
Bse1I ACTGG 6 cut(s) 409, 448, 453, 568, 656, 1243
Bse21I CCTNAGG 1 cut(s) 1278
Bse3DI GCAATG 2 cut(s) 311, 1326
BseAI TCCGGA 1 cut(s) 1378
BseBI CCWGG 1 cut(s) 724
BseGI GGATG 6 cut(s) 79, 594, 824, 1183, 1220, 1372
BseLI CCNNNNNNNGG 5 cut(s) 234, 273, 858, 1211, 1322
BseMI GCAATG 2 cut(s) 311, 1326
BseMII CTCAG 5 cut(s) 113, 318, 816, 855, 1269
BseNI ACTGG 6 cut(s) 409, 448, 453, 568, 656, 1243
BseRI GAGGAG 4 cut(s) 270, 563, 601, 1196
BseSI GKGCMC 2 cut(s) 784, 1131
BseXI GCAGC 4 cut(s) 170, 289, 292, 295
BseYI CCCAGC 3 cut(s) 47, 553, 1161
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 11, 277
BshNI GGYRCC 2 cut(s) 378, 531
BsiHKAI GWGCWC 4 cut(s) 784, 877, 1131, 1148
BsiSI CCGG 6 cut(s) 88, 376, 395, 504, 657, 1379
BslI CCNNNNNNNGG 5 cut(s) 234, 273, 858, 1211, 1322
BsmAI GTCTC 3 cut(s) 971, 996, 1178
BsnI GGCC 2 cut(s) 11, 277
Bso31I GGTCTC 1 cut(s) 1178
Bsp1286I GDGCHC 4 cut(s) 784, 877, 1131, 1148
Bsp13I TCCGGA 1 cut(s) 1378
Bsp143I GATC 2 cut(s) 944, 1307
Bsp1720I GCTNAGC 1 cut(s) 122
Bsp68I TCGCGA 1 cut(s) 38
BspANI GGCC 2 cut(s) 11, 277
BspCNI CTCAG 5 cut(s) 114, 319, 817, 856, 1270
BspEI TCCGGA 1 cut(s) 1378
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 4 cut(s) 204, 380, 533, 991
BspMI ACCTGC 1 cut(s) 1324
BspPI GGATC 1 cut(s) 952
BspQI GCTCTTC 1 cut(s) 1136
BspT107I GGYRCC 2 cut(s) 378, 531
BspTNI GGTCTC 1 cut(s) 1178
BsrBI CCGCTC 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 311, 1326
BsrFI RCCGGY 1 cut(s) 375
BsrI ACTGG 6 cut(s) 409, 448, 453, 568, 656, 1243
BssAI RCCGGY 1 cut(s) 375
BssMI GATC 2 cut(s) 944, 1307
BssNI GRCGYC 1 cut(s) 379
BssSI CACGAG 2 cut(s) 417, 1263
Bst2BI CACGAG 2 cut(s) 417, 1263
Bst2UI CCWGG 1 cut(s) 724
Bst4CI ACNGT 1 cut(s) 903
Bst6I CTCTTC 5 cut(s) 227, 619, 624, 1008, 1136
BstACI GRCGYC 1 cut(s) 379
BstC8I GCNNGC 2 cut(s) 128, 377
BstDEI CTNAG 5 cut(s) 122, 327, 825, 864, 1278
BstF5I GGATG 6 cut(s) 79, 594, 824, 1183, 1220, 1372
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 2 cut(s) 947, 1310
BstMAI GTCTC 3 cut(s) 971, 996, 1178
BstMBI GATC 2 cut(s) 944, 1307
BstMWI GCNNNNNNNGC 4 cut(s) 104, 127, 136, 308
BstNI CCWGG 1 cut(s) 724
BstNSI RCATGY 2 cut(s) 494, 1064
BstSCI CCNGG 2 cut(s) 394, 722
BstSFI CTRYAG 1 cut(s) 1359
BstSLI GKGCMC 2 cut(s) 784, 1131
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 4 cut(s) 170, 289, 292, 295
Bsu36I CCTNAGG 1 cut(s) 1278
BsuI GTATCC 1 cut(s) 653
BsuRI GGCC 2 cut(s) 11, 277
BtgZI GCGATG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 6 cut(s) 79, 594, 824, 1183, 1220, 1372
BtsIMutI CAGTG 3 cut(s) 460, 561, 804
BtuMI TCGCGA 1 cut(s) 38
BveI ACCTGC 1 cut(s) 1324
Cac8I GCNNGC 2 cut(s) 128, 377
CaiI CAGNNNCTG 3 cut(s) 183, 806, 980
CciI TCATGA 1 cut(s) 604
CfoI GCGC 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 407, 654
Csp6I GTAC 6 cut(s) 367, 390, 525, 532, 568, 1326
CviAII CATG 6 cut(s) 491, 605, 711, 1056, 1061, 1095
CviQI GTAC 6 cut(s) 367, 390, 525, 532, 568, 1326
DdeI CTNAG 5 cut(s) 122, 327, 825, 864, 1278
DinI GGCGCC 1 cut(s) 380
DpnI GATC 2 cut(s) 946, 1309
DpnII GATC 2 cut(s) 944, 1307
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 5 cut(s) 227, 619, 624, 1008, 1136
EarI CTCTTC 5 cut(s) 227, 619, 624, 1008, 1136
EciI GGCGGA 3 cut(s) 148, 165, 417
Eco147I AGGCCT 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 1178
Eco47I GGWCC 2 cut(s) 407, 654
Eco57I CTGAAG 2 cut(s) 600, 720
Eco81I CCTNAGG 1 cut(s) 1278
EcoRII CCWGG 1 cut(s) 722
EgeI GGCGCC 1 cut(s) 380
EheI GGCGCC 1 cut(s) 380
FaeI CATG 6 cut(s) 494, 608, 714, 1059, 1064, 1098
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FatI CATG 6 cut(s) 490, 604, 710, 1055, 1060, 1094
FauI CCCGC 2 cut(s) 232, 536
FblI GTMKAC 2 cut(s) 889, 1284
FokI GGATG 6 cut(s) 66, 601, 831, 1190, 1227, 1379
FspBI CTAG 3 cut(s) 27, 671, 761
GlaI GCGC 1 cut(s) 380
GsaI CCCAGC 3 cut(s) 51, 557, 1165
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 2 cut(s) 11, 277
HapII CCGG 6 cut(s) 88, 376, 395, 504, 657, 1379
HhaI GCGC 1 cut(s) 381
Hin1I GRCGYC 1 cut(s) 379
Hin1II CATG 6 cut(s) 494, 608, 714, 1059, 1064, 1098
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HpaII CCGG 6 cut(s) 88, 376, 395, 504, 657, 1379
HphI GGTGA 4 cut(s) 35, 133, 1166, 1302
Hpy188I TCNGA 7 cut(s) 164, 193, 207, 213, 328, 619, 826
Hpy188III TCNNGA 8 cut(s) 37, 419, 605, 743, 1041, 1265, 1337, 1379
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 5 cut(s) 70, 454, 490, 695, 933
HpyCH4III ACNGT 1 cut(s) 903
HpyCH4IV ACGT 2 cut(s) 111, 1081
HpyCH4V TGCA 4 cut(s) 311, 782, 1129, 1319
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 127, 136, 308
HpyF3I CTNAG 5 cut(s) 122, 327, 825, 864, 1278
HpySE526I ACGT 2 cut(s) 111, 1081
Hsp92I GRCGYC 1 cut(s) 379
Hsp92II CATG 6 cut(s) 494, 608, 714, 1059, 1064, 1098
HspAI GCGC 1 cut(s) 379
KasI GGCGCC 1 cut(s) 378
Kpn2I TCCGGA 1 cut(s) 1378
KpnI GGTACC 1 cut(s) 535
KroI GCCGGC 1 cut(s) 375
KroNI GCCGGC 1 cut(s) 377
Kzo9I GATC 2 cut(s) 944, 1307
LguI GCTCTTC 1 cut(s) 1136
LmnI GCTCC 3 cut(s) 224, 550, 872
Lsp1109I GCAGC 4 cut(s) 170, 289, 292, 295
LweI GCATC 2 cut(s) 88, 838
MaeI CTAG 3 cut(s) 27, 671, 761
MaeII ACGT 2 cut(s) 111, 1081
MaeIII GTNAC 4 cut(s) 647, 755, 1063, 1245
MalI GATC 2 cut(s) 946, 1309
MbiI CCGCTC 1 cut(s) 253
MboI GATC 2 cut(s) 944, 1307
MboII GAAGA 8 cut(s) 244, 527, 606, 641, 728, 1025, 1115, 1153
MfeI CAATTG 1 cut(s) 1254
MhlI GDGCHC 4 cut(s) 784, 877, 1131, 1148
MluCI AATT 2 cut(s) 338, 1254
Mly113I GGCGCC 1 cut(s) 379
MlyI GAGTC 6 cut(s) 34, 168, 178, 188, 288, 602
MmeI TCCRAC 3 cut(s) 142, 216, 291
MreI CGCCGGCG 1 cut(s) 375
MroI TCCGGA 1 cut(s) 1378
MroNI GCCGGC 1 cut(s) 375
MseI TTAA 3 cut(s) 482, 894, 1387
MslI CAYNNNNRTG 3 cut(s) 744, 880, 1134
MspI CCGG 6 cut(s) 88, 376, 395, 504, 657, 1379
MspR9I CCNGG 2 cut(s) 396, 724
MunI CAATTG 1 cut(s) 1254
MvaI CCWGG 1 cut(s) 724
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 104, 127, 136, 308
NaeI GCCGGC 1 cut(s) 377
NarI GGCGCC 1 cut(s) 379
NciI CCSGG 1 cut(s) 396
NdeII GATC 2 cut(s) 944, 1307
NgoMIV GCCGGC 1 cut(s) 375
NlaIII CATG 6 cut(s) 494, 608, 714, 1059, 1064, 1098
NlaIV GGNNCC 4 cut(s) 204, 380, 533, 991
NmeAIII GCCGAG 2 cut(s) 176, 253
NmuCI GTSAC 1 cut(s) 647
NruI TCGCGA 1 cut(s) 38
NspI RCATGY 2 cut(s) 494, 1064
PagI TCATGA 1 cut(s) 604
PaqCI CACCTGC 1 cut(s) 1324
PceI AGGCCT 1 cut(s) 277
PciI ACATGT 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 1136
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 377
PfeI GAWTC 6 cut(s) 174, 208, 263, 500, 707, 1235
PflMI CCANNNNNTGG 1 cut(s) 858
PfoI TCCNGGA 1 cut(s) 394
PleI GAGTC 6 cut(s) 34, 167, 177, 188, 288, 602
PluTI GGCGCC 1 cut(s) 382
PpsI GAGTC 6 cut(s) 34, 167, 177, 188, 288, 602
PscI ACATGT 1 cut(s) 490
Psp1406I AACGTT 1 cut(s) 1081
Psp6I CCWGG 1 cut(s) 722
PspFI CCCAGC 3 cut(s) 47, 553, 1161
PspGI CCWGG 1 cut(s) 722
PspN4I GGNNCC 4 cut(s) 204, 380, 533, 991
PspPI GGNCC 2 cut(s) 407, 654
PsrI GAACNNNNNNTAC 2 cut(s) 551, 583
PstNI CAGNNNCTG 3 cut(s) 183, 806, 980
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 6 cut(s) 368, 391, 526, 533, 569, 1327
RsaNI GTAC 6 cut(s) 367, 390, 525, 532, 568, 1326
RseI CAYNNNNRTG 3 cut(s) 744, 880, 1134
SapI GCTCTTC 1 cut(s) 1136
SaqAI TTAA 3 cut(s) 482, 894, 1387
Sau3AI GATC 2 cut(s) 944, 1307
Sau96I GGNCC 2 cut(s) 407, 654
ScaI AGTACT 1 cut(s) 526
SchI GAGTC 6 cut(s) 34, 168, 178, 188, 288, 602
ScrFI CCNGG 2 cut(s) 396, 724
SduI GDGCHC 4 cut(s) 784, 877, 1131, 1148
SfaNI GCATC 2 cut(s) 88, 838
SfcI CTRYAG 1 cut(s) 1359
SfoI GGCGCC 1 cut(s) 380
SgrAI CRCCGGYG 1 cut(s) 375
SinI GGWCC 2 cut(s) 407, 654
SmiMI CAYNNNNRTG 3 cut(s) 744, 880, 1134
Sse9I AATT 2 cut(s) 338, 1254
SseBI AGGCCT 1 cut(s) 277
SspDI GGCGCC 1 cut(s) 378
SspMI CTAG 3 cut(s) 27, 671, 761
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 2 cut(s) 394, 722
TaaI ACNGT 1 cut(s) 903
TaiI ACGT 2 cut(s) 114, 1084
TaqI TCGA 2 cut(s) 172, 261
TasI AATT 2 cut(s) 338, 1254
TatI WGTACW 2 cut(s) 389, 524
TauI GCSGC 7 cut(s) 8, 11, 54, 133, 256, 1207, 1276
TfiI GAWTC 6 cut(s) 174, 208, 263, 500, 707, 1235
Tru1I TTAA 3 cut(s) 482, 894, 1387
Tru9I TTAA 3 cut(s) 482, 894, 1387
TscAI CASTG 3 cut(s) 460, 568, 811
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 4 cut(s) 183, 302, 305, 308
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 8 cut(s) 528, 699, 728, 762, 912, 1092, 1359, 1383
TspGWI ACGGA 2 cut(s) 951, 1227
TspRI CASTG 3 cut(s) 460, 568, 811
Van91I CCANNNNNTGG 1 cut(s) 858
VneI GTGCAC 2 cut(s) 780, 1127
VpaK11BI GGWCC 2 cut(s) 407, 654
XceI RCATGY 2 cut(s) 494, 1064
XmiI GTMKAC 2 cut(s) 889, 1284
XspI CTAG 3 cut(s) 27, 671, 761
ZrmI AGTACT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.