Rorug06G0328400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005878
Physical Location & Seq
Reverse (-)
48122706 .. 48124740
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0328400.1

Sequence Viewer

Length: 666 bp
ATGGCTCAAACGCCTAGGTCCACTAATCTGAAAACTGAGAGAGTTCAGTCACAGCCTGAAAGACCAAATCTTCCTACGGAAGAAATGGCACAAGAGAATGCACCTCCACAGAAGAAAAGCAAGGCAAGGAAGAAACGGCCAAGGTACTACACAGCAGTTAGGCGATCTTCACGCATCCGAAACACTGTGACTCCCTCTCAAAACCGGAGCCTACAGCCAGTGCAGATTACAATCAGTGAAAGCGAGAGTGAAAGCGACAGAGAAGAGGAGCCTCCTTGTTTGGAGGAGAATGTGGAGGAGCTGGCTGTTCGTGGTGAGAAAACATTGGATGAAAAAGTGGACTATGCTGTGCAGTTATTGGAGACTATGAGCTCACAGGGTAACAATAGGATCTCTGACACTTCTGAACTCAGATACAGAAGTTTGTACTTTGAGTCCCAAAAGCAGAATGAGAAATTGAAAAAGGAGAACCGTGAGCTTTCTTTGAAGTTGCAAGTTGCTCTTGCCAAAATTGAAGGATTTGAGAAAGGGAGTAATGCATCTGTGGAATGGATGGCAAAATTTAAAGATGTGTTGTTGGTTACAAGCTTGGCAAAAGCTTCTGAAATGGTTGCTTCTCAAGATCCTAAAGCGGCTTCTTCTTCAAAGAGAAAGAGACATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

25.24

Weight (kDa)

9.4

Isoelectric Point (pI)

68.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 632
AclWI GGATC 2 cut(s) 398, 617
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 1 cut(s) 560
AfaI GTAC 2 cut(s) 146, 428
AgsI TTSAA 4 cut(s) 460, 487, 515, 645
AluBI AGCT 5 cut(s) 301, 372, 478, 588, 599
AluI AGCT 5 cut(s) 301, 372, 478, 588, 599
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 2 cut(s) 356, 649
AlwI GGATC 2 cut(s) 398, 617
AoxI GGCC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 560
AspA2I CCTAGG 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 326
AvaII GGWCC 1 cut(s) 18
AvrII CCTAGG 1 cut(s) 14
BaeI ACNNNNGTAYC 2 cut(s) 406, 439
BanII GRGCYC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 374
BccI CCATC 1 cut(s) 547
BceAI ACGGC 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 356, 649
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 212
BisI GCNGC 1 cut(s) 633
BlnI CCTAGG 1 cut(s) 14
BlsI GCNGC 1 cut(s) 634
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 209, 270
BmsI GCATC 2 cut(s) 183, 548
BpuEI CTTGAG 1 cut(s) 603
BsaBI GATNNNNATC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 14, 140
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bse1I ACTGG 1 cut(s) 218
Bse8I GATNNNNATC 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 14, 140
BseGI GGATG 4 cut(s) 174, 334, 558, 658
BseJI GATNNNNATC 1 cut(s) 230
BseMII CTCAG 2 cut(s) 27, 424
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 3 cut(s) 281, 299, 311
BsgI GTGCAG 2 cut(s) 242, 371
BshFI GGCC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 374
BsiSI CCGG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 421
BsmAI GTCTC 2 cut(s) 356, 649
BsmFI GGGAC 1 cut(s) 421
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 3 cut(s) 164, 390, 622
BspACI CCGC 1 cut(s) 632
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 28, 423
BspLI GGNNCC 2 cut(s) 209, 270
BspPI GGATC 2 cut(s) 398, 617
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 14, 140
BssMI GATC 3 cut(s) 164, 390, 622
BssT1I CCWWGG 2 cut(s) 14, 140
Bst4CI ACNGT 2 cut(s) 187, 473
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 36, 410
BstF5I GGATG 4 cut(s) 174, 334, 558, 658
BstKTI GATC 3 cut(s) 167, 393, 625
BstMAI GTCTC 2 cut(s) 356, 649
BstMBI GATC 3 cut(s) 164, 390, 622
BstSFI CTRYAG 1 cut(s) 212
BstX2I RGATCY 2 cut(s) 390, 622
BstYI RGATCY 2 cut(s) 390, 622
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 4 cut(s) 174, 334, 558, 658
BtsIMutI CAGTG 3 cut(s) 183, 225, 241
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 2 cut(s) 145, 427
CviQI GTAC 2 cut(s) 145, 427
DdeI CTNAG 2 cut(s) 36, 410
DpnI GATC 3 cut(s) 166, 392, 624
DpnII GATC 3 cut(s) 164, 390, 622
DraI TTTAAA 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 372
Eco130I CCWWGG 2 cut(s) 14, 140
Eco24I GRGCYC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 14, 140
EcoT22I ATGCAT 1 cut(s) 541
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 2 cut(s) 14, 140
FaiI YATR 2 cut(s) 345, 368
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 633
FokI GGATG 4 cut(s) 161, 341, 565, 645
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 633
FspBI CTAG 1 cut(s) 15
GluI GCNGC 1 cut(s) 633
HaeIII GGCC 1 cut(s) 139
HapII CCGG 1 cut(s) 205
HindIII AAGCTT 2 cut(s) 586, 597
HinfI GANTC 2 cut(s) 190, 434
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 21, 340
Hpy188I TCNGA 6 cut(s) 30, 179, 397, 406, 413, 604
Hpy188III TCNNGA 1 cut(s) 620
Hpy8I GTNNAC 2 cut(s) 21, 340
HpyAV CCTTC 1 cut(s) 509
HpyCH4III ACNGT 2 cut(s) 187, 473
HpyCH4V TGCA 5 cut(s) 101, 223, 352, 493, 539
HpyF3I CTNAG 2 cut(s) 36, 410
Kzo9I GATC 3 cut(s) 164, 390, 622
LmnI GCTCC 3 cut(s) 207, 268, 298
LpnPI CCDG 5 cut(s) 69, 218, 231, 287, 362
LweI GCATC 2 cut(s) 183, 548
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 4 cut(s) 48, 187, 380, 580
MalI GATC 3 cut(s) 166, 392, 624
MboI GATC 3 cut(s) 164, 390, 622
MboII GAAGA 8 cut(s) 62, 92, 124, 142, 159, 275, 630, 633
MflI RGATCY 2 cut(s) 390, 622
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 3 cut(s) 455, 510, 560
MlyI GAGTC 2 cut(s) 184, 443
MnlI CCTC 6 cut(s) 114, 205, 259, 277, 282, 289
Mph1103I ATGCAT 1 cut(s) 541
MseI TTAA 1 cut(s) 564
MspI CCGG 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 103
NdeII GATC 3 cut(s) 164, 390, 622
NlaIV GGNNCC 2 cut(s) 209, 270
NmuCI GTSAC 2 cut(s) 48, 187
NsiI ATGCAT 1 cut(s) 541
PctI GAATGC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 634
PleI GAGTC 2 cut(s) 184, 442
PpsI GAGTC 2 cut(s) 184, 442
Psp124BI GAGCTC 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 209, 270
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 2 cut(s) 390, 622
RsaI GTAC 2 cut(s) 146, 428
RsaNI GTAC 2 cut(s) 145, 427
SacI GAGCTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 1 cut(s) 633
Sau3AI GATC 3 cut(s) 164, 390, 622
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 2 cut(s) 184, 443
SduI GDGCHC 1 cut(s) 374
SetI ASST 8 cut(s) 20, 106, 146, 303, 374, 480, 590, 601
SfaNI GCATC 2 cut(s) 183, 548
SfcI CTRYAG 1 cut(s) 212
SinI GGWCC 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 618
SmoI CTYRAG 1 cut(s) 618
Sse9I AATT 3 cut(s) 455, 510, 560
SsiI CCGC 1 cut(s) 632
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 374
StyI CCWWGG 2 cut(s) 14, 140
TaaI ACNGT 2 cut(s) 187, 473
TasI AATT 3 cut(s) 455, 510, 560
TatI WGTACW 1 cut(s) 426
TauI GCSGC 1 cut(s) 635
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 3 cut(s) 190, 225, 241
TseFI GTSAC 2 cut(s) 48, 187
Tsp45I GTSAC 2 cut(s) 48, 187
TspDTI ATGAA 1 cut(s) 345
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 3 cut(s) 190, 225, 241
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 1 cut(s) 560
XmaJI CCTAGG 1 cut(s) 14
XspI CTAG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.