AT1G43770

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002389
Physical Location & Seq
Forward (+)
16548417 .. 16551909
3493 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G43770.1

Sequence Viewer

Length: 1116 bp
ATGTCTTTACATGTCAAGGGACCTGTTTGTCAAACTTGTGGCGACATAGGTTTTGAAGAAGCACTTGTCTTTTGTGACTCTTGTATGTTTGAGTCTATTCACCGCTATTGCTTAGGGATAACACCGATTCCTTTTACGGAATACATAACTTGGATTTGTGAGGATTGTGATAACAGTGAGAGTGATTCTGATTGCAATGAAGTTGATCAGACTGTTAAGAAGAAGAAGAAGAGTAGAAATCAACCCCTTGTGGTTTTAGCTGAGGACAATGTGCTCCAGGAACCTTTGGAGGGGTCTAAGAGAGAAGAAAGCTCATGTAGCAGAAAACCTCATGAATTGACTTGTTTAGATGGAAATGGAGAATCTGTTTTGGAGGCTGCAGATTCATCTAGTGTGCCAGATCATAGTTCTTGTACTAGCAAAAGGAAAGAAGTTGATCAGACTGCTAATCTTGGACATATCTTGGAGAGGAGTGAGAAAAAGAAGAAGAAGAAGAAGAAGAAAAAGAGCATCAATCATTCGCCACCGGTTTTAGCTGTTGAGGACCATGAGCTTCAGGGTACTACCAATGTTGTTGAACCTGTGGAGGTGTCTTCTTCTTCACCAACTAAAGAAACGATGGAGTCTAAGAGACAAGAAAGCTCAGATAGTAGAAAACCTCATGAATTGACTTGTTTAGTTGGAGATTCGGAGACCGCTAATTCATCTAGTGTGCCAGAGCATAATTCTTGTGCTGTCAAAAAGAGAAAATTAAGTTCTGGAAACAAACAGATTCAGTTAGCTGATGGGAGTAGTTCTTGCAGAGTGGCTGAATCAAATATGCCTCTAACGTTGACATCTAGGAACTATAGAGCACAACCTATCAAAATACCGATATGGAGGGGATTGATGTCTGTTAAAGGAGGAAACAGCTGTACCATGGATGGGATTGTTGCTCATGTATCAAGCTTAGCCTGCCCTAAAGTCCATGAAACGGCTAGTTCATTAAAGGGTCGGCTCTCTGCTGAAATACTTCCTAGGTTGGAAGTATGGCCAAAGACCTTTTTGAAGAATGGAGGACCTAAGGATGAAAGCGTTGCCCTTTTTTTCTTCCCTTCCAGTGAAAGGTGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

371

Amino Acids

40.76

Weight (kDa)

6.61

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 293 - 369 1.4e-18 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 27
AciI CCGC 2 cut(s) 103, 696
AclI AACGTT 1 cut(s) 830
AcoI YGGCCR 1 cut(s) 1031
AcuI CTGAAG 1 cut(s) 539
AfaI GTAC 4 cut(s) 415, 562, 916, 1111
AfiI CCNNNNNNNGG 4 cut(s) 290, 924, 973, 1104
AflIII ACRYGT 1 cut(s) 10
AgeI ACCGGT 1 cut(s) 526
AgsI TTSAA 3 cut(s) 56, 578, 1048
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 8 cut(s) 260, 312, 536, 553, 642, 782, 912, 948
AluI AGCT 8 cut(s) 260, 312, 536, 553, 642, 782, 912, 948
Alw21I GWGCWC 2 cut(s) 276, 856
Alw26I GTCTC 2 cut(s) 625, 686
AoxI GGCC 1 cut(s) 1031
ApeKI GCWGC 1 cut(s) 377
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AsiGI ACCGGT 1 cut(s) 526
Asp700I GAANNNNTTC 1 cut(s) 1011
AspA2I CCTAGG 1 cut(s) 1016
AspS9I GGNCC 3 cut(s) 20, 544, 1058
AsuHPI GGTGA 2 cut(s) 92, 594
AvaII GGWCC 3 cut(s) 20, 544, 1058
AvrII CCTAGG 1 cut(s) 1016
AxyI CCTNAGG 1 cut(s) 1062
BaeI ACNNNNGTAYC 2 cut(s) 898, 931
BalI TGGCCA 1 cut(s) 1033
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 2 cut(s) 276, 856
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 364
BccI CCATC 4 cut(s) 344, 613, 779, 917
BceAI ACGGC 1 cut(s) 990
BciT130I CCWGG 1 cut(s) 278
BclI TGATCA 2 cut(s) 205, 436
BcoDI GTCTC 2 cut(s) 625, 686
BfaI CTAG 6 cut(s) 390, 417, 708, 840, 978, 1017
BfmI CTRYAG 2 cut(s) 378, 847
BisI GCNGC 1 cut(s) 378
BlnI CCTAGG 1 cut(s) 1016
BlpI GCTNAGC 1 cut(s) 949
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 3 cut(s) 20, 544, 1058
BmgT120I GGNCC 3 cut(s) 20, 544, 1058
BmiI GGNNCC 2 cut(s) 21, 282
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 260
Bpu10I CCTNAGC 2 cut(s) 112, 261
Bpu1102I GCTNAGC 1 cut(s) 949
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 2 cut(s) 918, 1016
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 924, 973, 1104
Bse118I RCCGGY 1 cut(s) 526
Bse1I ACTGG 1 cut(s) 1098
Bse21I CCTNAGG 1 cut(s) 1062
Bse3DI GCAATG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 918, 1016
BseGI GGATG 2 cut(s) 928, 1072
BseLI CCNNNNNNNGG 4 cut(s) 290, 924, 973, 1104
BseMI GCAATG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 252, 657
BseNI ACTGG 1 cut(s) 1098
BseRI GAGGAG 1 cut(s) 484
BseXI GCAGC 1 cut(s) 364
BshFI GGCC 1 cut(s) 1033
BshTI ACCGGT 1 cut(s) 526
BsiHKAI GWGCWC 2 cut(s) 276, 856
BsiSI CCGG 1 cut(s) 527
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 4 cut(s) 290, 924, 973, 1104
BsmAI GTCTC 2 cut(s) 625, 686
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 1033
Bso31I GGTCTC 1 cut(s) 686
Bsp1286I GDGCHC 2 cut(s) 276, 856
Bsp1407I TGTACA 1 cut(s) 1109
Bsp143I GATC 3 cut(s) 205, 400, 436
Bsp1720I GCTNAGC 1 cut(s) 949
Bsp19I CCATGG 1 cut(s) 918
BspACI CCGC 2 cut(s) 103, 696
BspANI GGCC 1 cut(s) 1033
BspCNI CTCAG 2 cut(s) 253, 656
BspHI TCATGA 2 cut(s) 331, 661
BspLI GGNNCC 2 cut(s) 21, 282
BspMAI CTGCAG 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 526
BsrGI TGTACA 1 cut(s) 1109
BsrI ACTGG 1 cut(s) 1098
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 2 cut(s) 918, 1016
BssMI GATC 3 cut(s) 205, 400, 436
BssT1I CCWWGG 2 cut(s) 918, 1016
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 176, 214
Bst6I CTCTTC 1 cut(s) 224
BstAUI TGTACA 1 cut(s) 1109
BstC8I GCNNGC 1 cut(s) 955
BstDEI CTNAG 7 cut(s) 112, 261, 297, 627, 643, 949, 1062
BstDSI CCRYGG 1 cut(s) 918
BstF5I GGATG 2 cut(s) 928, 1072
BstKTI GATC 3 cut(s) 208, 403, 439
BstMAI GTCTC 2 cut(s) 625, 686
BstMBI GATC 3 cut(s) 205, 400, 436
BstMWI GCNNNNNNNGC 2 cut(s) 318, 954
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 2 cut(s) 378, 847
BstV1I GCAGC 1 cut(s) 364
BstV2I GAAGAC 1 cut(s) 585
Bsu36I CCTNAGG 1 cut(s) 1062
BsuRI GGCC 1 cut(s) 1033
BtgI CCRYGG 1 cut(s) 918
BtsCI GGATG 2 cut(s) 928, 1072
BtsIMutI CAGTG 2 cut(s) 181, 1105
Cac8I GCNNGC 1 cut(s) 955
CciI TCATGA 2 cut(s) 331, 661
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 3 cut(s) 20, 544, 1058
Csp6I GTAC 4 cut(s) 414, 561, 915, 1110
CspAI ACCGGT 1 cut(s) 526
CviAII CATG 9 cut(s) 11, 315, 332, 548, 662, 919, 938, 968, 1113
CviQI GTAC 4 cut(s) 414, 561, 915, 1110
DdeI CTNAG 7 cut(s) 112, 261, 297, 627, 643, 949, 1062
DpnI GATC 3 cut(s) 207, 402, 438
DpnII GATC 3 cut(s) 205, 400, 436
DrdI GACNNNNNNGTC 1 cut(s) 27
DseDI GACNNNNNNGTC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 1031
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 2 cut(s) 918, 1016
Eco31I GGTCTC 1 cut(s) 686
Eco47I GGWCC 3 cut(s) 20, 544, 1058
Eco57I CTGAAG 1 cut(s) 539
Eco81I CCTNAGG 1 cut(s) 1062
EcoO109I RGGNCCY 2 cut(s) 20, 1058
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 2 cut(s) 918, 1016
ErhI CCWWGG 2 cut(s) 918, 1016
FaeI CATG 9 cut(s) 14, 318, 335, 551, 665, 922, 941, 971, 1116
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 1 cut(s) 33
FatI CATG 9 cut(s) 10, 314, 331, 547, 661, 918, 937, 967, 1112
FbaI TGATCA 2 cut(s) 205, 436
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 2 cut(s) 935, 1079
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 6 cut(s) 390, 417, 708, 840, 978, 1017
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 1 cut(s) 1033
HapII CCGG 1 cut(s) 527
Hin1II CATG 9 cut(s) 14, 318, 335, 551, 665, 922, 941, 971, 1116
HincII GTYRAC 1 cut(s) 834
HindII GTYRAC 1 cut(s) 834
HindIII AAGCTT 1 cut(s) 946
HpaII CCGG 1 cut(s) 527
HphI GGTGA 2 cut(s) 92, 594
Hpy166II GTNNAC 2 cut(s) 834, 1110
Hpy188I TCNGA 5 cut(s) 190, 210, 441, 646, 691
Hpy188III TCNNGA 3 cut(s) 332, 662, 759
Hpy8I GTNNAC 2 cut(s) 834, 1110
HpyAV CCTTC 1 cut(s) 1104
HpyCH4III ACNGT 2 cut(s) 176, 214
HpyCH4IV ACGT 1 cut(s) 830
HpyCH4V TGCA 3 cut(s) 195, 380, 801
HpyF10VI GCNNNNNNNGC 2 cut(s) 318, 954
HpyF3I CTNAG 7 cut(s) 112, 261, 297, 627, 643, 949, 1062
HpySE526I ACGT 1 cut(s) 830
Hsp92II CATG 9 cut(s) 14, 318, 335, 551, 665, 922, 941, 971, 1116
Ksp22I TGATCA 2 cut(s) 205, 436
Kzo9I GATC 3 cut(s) 205, 400, 436
LmnI GCTCC 1 cut(s) 279
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 1 cut(s) 519
MaeI CTAG 6 cut(s) 390, 417, 708, 840, 978, 1017
MaeII ACGT 1 cut(s) 830
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 207, 402, 438
MboI GATC 3 cut(s) 205, 400, 436
MhlI GDGCHC 2 cut(s) 276, 856
MlsI TGGCCA 1 cut(s) 1033
MluCI AATT 5 cut(s) 335, 665, 700, 724, 749
MluNI TGGCCA 1 cut(s) 1033
MlyI GAGTC 3 cut(s) 71, 101, 632
MmeI TCCRAC 2 cut(s) 661, 1002
Mox20I TGGCCA 1 cut(s) 1033
MroXI GAANNNNTTC 1 cut(s) 1011
MscI TGGCCA 1 cut(s) 1033
MseI TTAA 4 cut(s) 216, 752, 897, 986
Msp20I TGGCCA 1 cut(s) 1033
MspA1I CMGCKG 1 cut(s) 912
MspI CCGG 1 cut(s) 527
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 318, 954
NcoI CCATGG 1 cut(s) 918
NdeII GATC 3 cut(s) 205, 400, 436
NlaIII CATG 9 cut(s) 14, 318, 335, 551, 665, 922, 941, 971, 1116
NlaIV GGNNCC 2 cut(s) 21, 282
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 14
PagI TCATGA 2 cut(s) 331, 661
PciI ACATGT 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 1011
PfeI GAWTC 7 cut(s) 127, 185, 362, 383, 686, 772, 812
PfoI TCCNGGA 1 cut(s) 276
PinAI ACCGGT 1 cut(s) 526
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 3 cut(s) 71, 100, 631
PpsI GAGTC 3 cut(s) 71, 100, 631
PpuMI RGGWCCY 2 cut(s) 20, 1058
PscI ACATGT 1 cut(s) 10
Psp1406I AACGTT 1 cut(s) 830
Psp5II RGGWCCY 2 cut(s) 20, 1058
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 21, 282
PspPI GGNCC 3 cut(s) 20, 544, 1058
PspPPI RGGWCCY 2 cut(s) 20, 1058
PstI CTGCAG 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 912
RsaI GTAC 4 cut(s) 415, 562, 916, 1111
RsaNI GTAC 4 cut(s) 414, 561, 915, 1110
SaqAI TTAA 4 cut(s) 216, 752, 897, 986
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 3 cut(s) 205, 400, 436
Sau96I GGNCC 3 cut(s) 20, 544, 1058
SchI GAGTC 3 cut(s) 71, 101, 632
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 2 cut(s) 276, 856
SfaNI GCATC 1 cut(s) 519
SfcI CTRYAG 2 cut(s) 378, 847
SinI GGWCC 3 cut(s) 20, 544, 1058
Sse9I AATT 5 cut(s) 335, 665, 700, 724, 749
SsiI CCGC 2 cut(s) 103, 696
SspMI CTAG 6 cut(s) 390, 417, 708, 840, 978, 1017
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 2 cut(s) 918, 1016
TaaI ACNGT 2 cut(s) 176, 214
TaiI ACGT 1 cut(s) 833
TasI AATT 5 cut(s) 335, 665, 700, 724, 749
TatI WGTACW 2 cut(s) 413, 1109
TfiI GAWTC 7 cut(s) 127, 185, 362, 383, 686, 772, 812
Tru1I TTAA 4 cut(s) 216, 752, 897, 986
Tru9I TTAA 4 cut(s) 216, 752, 897, 986
TscAI CASTG 2 cut(s) 181, 1105
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 8 cut(s) 213, 348, 375, 678, 693, 972, 984, 1083
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 181, 1105
VpaK11BI GGWCC 3 cut(s) 20, 544, 1058
XceI RCATGY 1 cut(s) 14
XmaJI CCTAGG 1 cut(s) 1016
XmnI GAANNNNTTC 1 cut(s) 1011
XspI CTAG 6 cut(s) 390, 417, 708, 840, 978, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.