Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002389

Physical Location & Seq

Genomic Coordinates Reverse (-)

47418782 .. 47419780

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025662

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGATATTAGAAACACTTGCCTAGCTTGTGGTAGTGGAGCCTTTAGGGGAGTTCTGGTCTACTGTAGTAAGTGCAAGGAGTATGCACAGCATGGATATTGCCTTGGAGTATCAATAGACGAGTATGTTCGTCGTGGGCGTATTTGGTACTGTGAAGATTGCCAAGAGGTGAAGCCAGCTGCCTCTGTTTCCACTCATGATCTCGATGAATGTGAATCTATGGATACCGGAGAAGTGCTGCAAAGCACTCCTTCTGCCGGGACAAGTAGTACCCCTGATGGTACCAACAAGAACTTGAAGGCCAAGAACACCAAGAAGCTGAAAAAGAAGAGTCAGAAGAAGAAATCCAATCGATCTGGATTTGTGGCTAAAACGGTATTAGAGACAATACATGAAGGTAATGAAGAGGCTGAGGATGAGGGCACCGAAATCAATTGTGATGATGGTCACAAGCTTGTTAATGATCAAGAAGGGCATGGTCTTGAAAAAGATCAATTTGATGCCACCGATGACACTTCGGAAATAGATGAAGATGGCGATTCTACTCATGTTGCTGCTCAACCGGTTGCTATTCCAACTTGGAGGGGAAGCCTAAACATATTGAACAAAGTTAACTACAAGAACTTGAGAAATGAAACTATTAGTGGACTTGCTGCTCATCTCTCAAGCACAGCCTGCGCTAAAGTGTTGGAGGAGTCGAAATTTCTGAAGACACAGCTTGTCCCAGATTTGGTTCGTAGGACGGATGTGTGGCCAAAAGGTTATGGCATGTGTGAAACTAGTGATCGGAGTATTGCTCTTTATTTTTTCCCAGACAGCGAAACAGATGAGAAGGATTTCAACAACTTGATGGGTAGCATGATGCAGGAGGATCTCGCTATGAGAGTTGATGTCGAAAAAGCTGAGCTTTTGGTTTTCACTTCAAGCATGTTACCCAAGAAATATCAAAGAGTTAAGTCAAAGATGTATCTATGGGGAGTCTTCAAGGAAAAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

37.14

Weight (kDa)

5.35

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	7 - 54	3.5e-06	PHD-finger
SPOC_AIPP2	PF23121	194 - 328	6.3e-42	AIPP2, SPOC-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43770 AT1G43770 AT1G43770
fragaria_vesca	FvH4_2g14350 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_6g03141
malus_domestica	MD05G1018500.v1.1 MD10G1018200.v1.1
prunus_persica	Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1
pyrus_communis	pycom05g01100 pycom10g01220
rosa_chinensis	RchiOBHm_Chr3g0451401 RchiOBHm_Chr6g0276691
rosa_laevigata	RLG00000013378 RLG00000025662
rosa_multiflora	Rmu_sc0000441.1_g000026 Rmu_sc0002575.1_g000003 Rmu_sc0021369.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436520 Rroxscaffold_6G00428820 Rroxscaffold_7G00192110
rosa_rugosa	Rorug02G0633600 Rorug06G0103000
rosa_samantha	Rh3AG036600 Rh3BG037200 Rh3CG035800 Rh3DG036700 Rh6AG213200 Rh6BG218200 Rh6CG220700 Rh6DG210800
rosa_wichuraiana	Rw3G002700 Rw6G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	281
AccB1I	GGYRCC	2 cut(s)	281, 422
AccI	GTMKAC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	879
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	728
AfaI	GTAC	3 cut(s)	149, 271, 283
AfiI	CCNNNNNNNGG	2 cut(s)	257, 730
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	6 cut(s)	298, 485, 604, 841, 924, 985
AhlI	ACTAGT	1 cut(s)	779
AluBI	AGCT	7 cut(s)	26, 179, 319, 454, 718, 902, 907
AluI	AGCT	7 cut(s)	26, 179, 319, 454, 718, 902, 907
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	879
AoxI	GGCC	2 cut(s)	300, 752
ApeKI	GCWGC	4 cut(s)	179, 238, 554, 653
ApoI	RAATTY	1 cut(s)	701
AsiGI	ACCGGT	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	836
Asp718I	GGTACC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	680
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	754
BanI	GGYRCC	2 cut(s)	281, 422
BbsI	GAAGAC	2 cut(s)	716, 973
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	4 cut(s)	166, 225, 541, 640
BccI	CCATC	4 cut(s)	272, 437, 527, 844
BciVI	GTATCC	1 cut(s)	217
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	377
BcuI	ACTAGT	1 cut(s)	779
BfaI	CTAG	2 cut(s)	23, 780
BfmI	CTRYAG	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	180, 239, 555, 654
BlpI	GCTNAGC	1 cut(s)	903
BlsI	GCNGC	4 cut(s)	181, 240, 556, 655
Bme1390I	CCNGG	1 cut(s)	259
BmiI	GGNNCC	3 cut(s)	40, 283, 424
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	2 cut(s)	490, 852
BpiI	GAAGAC	2 cut(s)	716, 973
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
Bpu10I	CCTNAGC	1 cut(s)	411
Bpu1102I	GCTNAGC	1 cut(s)	903
BpuEI	CTTGAG	2 cut(s)	646, 649
BpuMI	CCSGG	1 cut(s)	259
Bsa29I	ATCGAT	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	2 cut(s)	227, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 730
Bse118I	RCCGGY	1 cut(s)	562
BseCI	ATCGAT	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	421, 751
BseLI	CCNNNNNNNGG	2 cut(s)	257, 730
BseMII	CTCAG	2 cut(s)	402, 894
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	425
BseXI	GCAGC	4 cut(s)	166, 225, 541, 640
BshFI	GGCC	2 cut(s)	302, 754
BshNI	GGYRCC	2 cut(s)	281, 422
BshTI	ACCGGT	1 cut(s)	562
BshVI	ATCGAT	1 cut(s)	352
BsiSI	CCGG	3 cut(s)	228, 258, 563
BslFI	GGGAC	2 cut(s)	274, 707
BslI	CCNNNNNNNGG	2 cut(s)	257, 730
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	2 cut(s)	274, 707
BsnI	GGCC	2 cut(s)	302, 754
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	6 cut(s)	199, 353, 463, 490, 784, 871
Bsp1720I	GCTNAGC	1 cut(s)	903
BspANI	GGCC	2 cut(s)	302, 754
BspCNI	CTCAG	2 cut(s)	403, 895
BspDI	ATCGAT	1 cut(s)	352
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	40, 283, 424
BspPI	GGATC	1 cut(s)	879
BspT107I	GGYRCC	2 cut(s)	281, 422
BsrFI	RCCGGY	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	6 cut(s)	199, 353, 463, 490, 784, 871
BssT1I	CCWWGG	1 cut(s)	103
Bst4CI	ACNGT	3 cut(s)	65, 152, 376
Bst6I	CTCTTC	2 cut(s)	323, 399
BstAPI	GCANNNNNTGC	1 cut(s)	675
BstC8I	GCNNGC	2 cut(s)	177, 676
BstDEI	CTNAG	2 cut(s)	411, 903
BstF5I	GGATG	2 cut(s)	421, 751
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	6 cut(s)	202, 356, 466, 493, 787, 874
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	6 cut(s)	199, 353, 463, 490, 784, 871
BstMWI	GCNNNNNNNGC	1 cut(s)	675
BstNSI	RCATGY	2 cut(s)	772, 931
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	64
BstSLI	GKGCMC	1 cut(s)	425
BstV1I	GCAGC	4 cut(s)	166, 225, 541, 640
BstV2I	GAAGAC	2 cut(s)	716, 973
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
Bsu15I	ATCGAT	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	302, 754
BsuTUI	ATCGAT	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	421, 751
Cac8I	GCNNGC	2 cut(s)	177, 676
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	680
Cfr10I	RCCGGY	1 cut(s)	562
ClaI	ATCGAT	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	148, 270, 282
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	8 cut(s)	92, 197, 392, 476, 548, 769, 859, 928
CviQI	GTAC	3 cut(s)	148, 270, 282
DdeI	CTNAG	2 cut(s)	411, 903
DpnI	GATC	6 cut(s)	201, 355, 465, 492, 786, 873
DpnII	GATC	6 cut(s)	199, 353, 463, 490, 784, 871
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	2 cut(s)	323, 399
EarI	CTCTTC	2 cut(s)	323, 399
Eco130I	CCWWGG	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	728
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	8 cut(s)	95, 200, 395, 479, 551, 772, 862, 931
FalI	AAGNNNNNCTT	4 cut(s)	235, 267, 891, 923
FaqI	GGGAC	2 cut(s)	274, 707
FatI	CATG	8 cut(s)	91, 196, 391, 475, 547, 768, 858, 927
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	180, 239, 555, 654
FokI	GGATG	2 cut(s)	428, 758
Fsp4HI	GCNGC	4 cut(s)	180, 239, 555, 654
FspBI	CTAG	2 cut(s)	23, 780
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	4 cut(s)	180, 239, 555, 654
HaeIII	GGCC	2 cut(s)	302, 754
HapII	CCGG	3 cut(s)	228, 258, 563
HhaI	GCGC	1 cut(s)	680
Hin1II	CATG	8 cut(s)	95, 200, 395, 479, 551, 772, 862, 931
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	5 cut(s)	215, 331, 539, 695, 978
HpaI	GTTAAC	1 cut(s)	613
HpaII	CCGG	3 cut(s)	228, 258, 563
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	61, 613, 647
Hpy188I	TCNGA	4 cut(s)	336, 520, 708, 789
Hpy188III	TCNNGA	5 cut(s)	197, 203, 357, 467, 482
Hpy8I	GTNNAC	3 cut(s)	61, 613, 647
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	5 cut(s)	261, 292, 389, 464, 826
HpyCH4III	ACNGT	3 cut(s)	65, 152, 376
HpyCH4V	TGCA	4 cut(s)	75, 86, 241, 865
HpyF10VI	GCNNNNNNNGC	1 cut(s)	675
HpyF3I	CTNAG	2 cut(s)	411, 903
Hsp92II	CATG	8 cut(s)	95, 200, 395, 479, 551, 772, 862, 931
HspAI	GCGC	1 cut(s)	678
KpnI	GGTACC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	613
Kzo9I	GATC	6 cut(s)	199, 353, 463, 490, 784, 871
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	4 cut(s)	166, 225, 541, 640
LweI	GCATC	2 cut(s)	490, 852
MaeI	CTAG	2 cut(s)	23, 780
MaeIII	GTNAC	2 cut(s)	446, 930
MalI	GATC	6 cut(s)	201, 355, 465, 492, 786, 873
MboI	GATC	6 cut(s)	199, 353, 463, 490, 784, 871
MboII	GAAGA	8 cut(s)	167, 340, 349, 352, 416, 542, 721, 973
MfeI	CAATTG	1 cut(s)	433
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	1 cut(s)	425
MlsI	TGGCCA	1 cut(s)	754
MluCI	AATT	3 cut(s)	433, 494, 701
MluNI	TGGCCA	1 cut(s)	754
MlyI	GAGTC	3 cut(s)	340, 704, 987
MmeI	TCCRAC	2 cut(s)	599, 669
MnlI	CCTC	8 cut(s)	160, 193, 400, 406, 412, 576, 685, 862
Mox20I	TGGCCA	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	836
MscI	TGGCCA	1 cut(s)	754
MseI	TTAA	4 cut(s)	459, 612, 954, 997
Msp20I	TGGCCA	1 cut(s)	754
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	3 cut(s)	228, 258, 563
MspR9I	CCNGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	433
MwoI	GCNNNNNNNGC	1 cut(s)	675
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	6 cut(s)	199, 353, 463, 490, 784, 871
NlaIII	CATG	8 cut(s)	95, 200, 395, 479, 551, 772, 862, 931
NlaIV	GGNNCC	3 cut(s)	40, 283, 424
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	2 cut(s)	772, 931
PagI	TCATGA	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	836
PfeI	GAWTC	2 cut(s)	215, 539
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	4 cut(s)	181, 240, 556, 655
PleI	GAGTC	3 cut(s)	339, 703, 986
PpsI	GAGTC	3 cut(s)	339, 703, 986
PspN4I	GGNNCC	3 cut(s)	40, 283, 424
PsuI	RGATCY	1 cut(s)	871
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	3 cut(s)	149, 271, 283
RsaNI	GTAC	3 cut(s)	148, 270, 282
SaqAI	TTAA	4 cut(s)	459, 612, 954, 997
SatI	GCNGC	4 cut(s)	180, 239, 555, 654
Sau3AI	GATC	6 cut(s)	199, 353, 463, 490, 784, 871
SchI	GAGTC	3 cut(s)	340, 704, 987
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	425
SfaNI	GCATC	2 cut(s)	490, 852
SfcI	CTRYAG	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	625, 664
SmoI	CTYRAG	2 cut(s)	625, 664
SpeI	ACTAGT	1 cut(s)	779
Sse9I	AATT	3 cut(s)	433, 494, 701
SspMI	CTAG	2 cut(s)	23, 780
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	3 cut(s)	65, 152, 376
TaqI	TCGA	4 cut(s)	204, 352, 698, 894
TasI	AATT	3 cut(s)	433, 494, 701
TfiI	GAWTC	2 cut(s)	215, 539
Tru1I	TTAA	4 cut(s)	459, 612, 954, 997
Tru9I	TTAA	4 cut(s)	459, 612, 954, 997
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	4 cut(s)	179, 238, 554, 653
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	5 cut(s)	222, 408, 417, 543, 648
TspGWI	ACGGA	1 cut(s)	758
XapI	RAATTY	1 cut(s)	701
XceI	RCATGY	2 cut(s)	772, 931
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	836
XspI	CTAG	2 cut(s)	23, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.