Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002389

Physical Location & Seq

Genomic Coordinates Reverse (-)

74790183 .. 74793097

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0633600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGTCTCACCATTATGGTCACAGTAATATTAATGTTACTAGCTAATAGAAATCTTGAATATTTTTTTGGTTTCAGCCCAGTTCCAGTTCCGATTCACCATGATGAGCAGCTGATGTGTTCTTGTGGAGGAACAAGAAAATTTCTGGTGGGTTTCTTGGAGGAGCTACTGCCATTTGGGTCCTTTTTGAGTTGCTTCAAGACCACTTGCATACACTTATCTGCCACATTCTGGTTGGTACCTTCACAATCTTGTTCCTATGGTCCAATGCCCATGCTATTATCCACAATGTTTAATCACAGAAGACCAAGATTTCCAAAATATGTTGCTACTGACACTAGTTCGAGATACCAAATTGGTGGTCCATTTGCATCTCTATGTGATAAAAACACGACGTCATCCCTAAATCCTCCCCTGATCGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.92

Weight (kDa)

7.63

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43770 AT1G43770 AT1G43770
fragaria_vesca	FvH4_2g14350 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_6g03141
malus_domestica	MD05G1018500.v1.1 MD10G1018200.v1.1
prunus_persica	Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1
pyrus_communis	pycom05g01100 pycom10g01220
rosa_chinensis	RchiOBHm_Chr3g0451401 RchiOBHm_Chr6g0276691
rosa_laevigata	RLG00000013378 RLG00000025662
rosa_multiflora	Rmu_sc0000441.1_g000026 Rmu_sc0002575.1_g000003 Rmu_sc0021369.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436520 Rroxscaffold_6G00428820 Rroxscaffold_7G00192110
rosa_rugosa	Rorug02G0633600 Rorug06G0103000
rosa_samantha	Rh3AG036600 Rh3BG037200 Rh3CG035800 Rh3DG036700 Rh6AG213200 Rh6BG218200 Rh6CG220700 Rh6DG210800
rosa_wichuraiana	Rw3G002700 Rw6G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	398
Acc65I	GGTACC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	238
AccB7I	CCANNNNNTGG	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	395
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	231, 421
AgsI	TTSAA	2 cut(s)	59, 199
AhlI	ACTAGT	1 cut(s)	338
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	3 cut(s)	44, 112, 166
AluI	AGCT	3 cut(s)	44, 112, 166
Alw26I	GTCTC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	140
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AseI	ATTAAT	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	238
AspS9I	GGNCC	3 cut(s)	180, 263, 362
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	3 cut(s)	180, 263, 362
BanI	GGYRCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	11
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	2 cut(s)	41, 339
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme18I	GGWCC	3 cut(s)	180, 263, 362
BmgT120I	GGNCC	3 cut(s)	180, 263, 362
BmiI	GGNNCC	2 cut(s)	181, 240
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 421
Bse1I	ACTGG	2 cut(s)	80, 86
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	2 cut(s)	231, 421
BseNI	ACTGG	2 cut(s)	80, 86
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	231, 421
BsmAI	GTCTC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	181, 240
BspT107I	GGYRCC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	80, 86
BssMI	GATC	1 cut(s)	417
BssNI	GRCGYC	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	395
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	398
BstKTI	GATC	1 cut(s)	420
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	180, 263, 362
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	2 cut(s)	101, 274
CviJI	RGCY	4 cut(s)	44, 78, 112, 166
CviKI_1	RGCY	4 cut(s)	44, 78, 112, 166
CviQI	GTAC	1 cut(s)	239
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	3 cut(s)	180, 263, 362
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	180
FaeI	CATG	2 cut(s)	104, 277
FaiI	YATR	7 cut(s)	17, 102, 212, 261, 275, 324, 379
FatI	CATG	2 cut(s)	100, 273
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	2 cut(s)	41, 339
GluI	GCNGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	104, 277
HinfI	GANTC	1 cut(s)	94
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	3 cut(s)	56, 199, 345
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	2 cut(s)	210, 371
HpySE526I	ACGT	1 cut(s)	395
Hsp92I	GRCGYC	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	104, 277
KpnI	GGTACC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	4 cut(s)	93, 99, 131, 217
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	380
MaeI	CTAG	2 cut(s)	41, 339
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	19, 36
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	1 cut(s)	315
MluCI	AATT	2 cut(s)	140, 354
MnlI	CCTC	4 cut(s)	122, 154, 415, 420
MseI	TTAA	3 cut(s)	32, 294, 427
MslI	CAYNNNNRTG	3 cut(s)	14, 102, 376
MspA1I	CMGCKG	1 cut(s)	112
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	2 cut(s)	104, 277
NlaIV	GGNNCC	2 cut(s)	181, 240
NmuCI	GTSAC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	111
PpuMI	RGGWCCY	1 cut(s)	180
PshBI	ATTAAT	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	181, 240
PspPI	GGNCC	3 cut(s)	180, 263, 362
PspPPI	RGGWCCY	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	3 cut(s)	14, 102, 376
SaqAI	TTAA	3 cut(s)	32, 294, 427
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	417
Sau96I	GGNCC	3 cut(s)	180, 263, 362
SetI	ASST	5 cut(s)	46, 114, 168, 244, 398
SfaNI	GCATC	1 cut(s)	380
SinI	GGWCC	3 cut(s)	180, 263, 362
SmiMI	CAYNNNNRTG	3 cut(s)	14, 102, 376
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	2 cut(s)	140, 354
SspI	AATATT	2 cut(s)	30, 62
SspMI	CTAG	2 cut(s)	41, 339
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	2 cut(s)	344, 420
TasI	AATT	2 cut(s)	140, 354
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	3 cut(s)	32, 294, 427
Tru9I	TTAA	3 cut(s)	32, 294, 427
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	231
VpaK11BI	GGWCC	3 cut(s)	180, 263, 362
VspI	ATTAAT	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XspI	CTAG	2 cut(s)	41, 339
ZraI	GACGTC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.