FvH4_2g14350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002389
Physical Location & Seq
Reverse (-)
12612359 .. 12616555
4197 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14350.t1

Sequence Viewer

Length: 408 bp
ATGGAATCTTTAAGATCAAATAGAGTTGAATTGTTAGTGTTCAAGAATTGTTTCAATGAAAGTGTTAGAGGGACTGTGAGGCTGAGAATTTGGGATAACCTTACTCTCACAGAGATATGGAAGCTTTTGTTTTGTTCTCCCTGCCCTTCCCCAAAGAAAATAGAATATTATTGCTTTAGTGTTGCTGAGCTCTTAGTCTTCACTTCAAGTGTACTGCCTGAGCATATTCAAAGATTCCAGACAAAGCTTTATTTGTGGGGAGCATTTAGGGGGAAGCAGTCTTCCCCATTAACAAATGATAATGCCCCCAGAGGTGAGAATGACCTCGCAAACCCCTTAACCTGTAATACACAGAGTCCAGTTAGTACATTGAGCAACAATGTGCATTGTGGTTCTGAATCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.38

Weight (kDa)

8.25

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 62 - 89 3.9e-08 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 2 cut(s) 213, 367
AgsI TTSAA 5 cut(s) 29, 43, 55, 207, 230
AluBI AGCT 3 cut(s) 124, 190, 247
AluI AGCT 3 cut(s) 124, 190, 247
Alw21I GWGCWC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 326
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 2 cut(s) 190, 273
Bbv12I GWGCWC 1 cut(s) 192
BlpI GCTNAGC 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 190, 273
Bpu10I CCTNAGC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 359
BseMII CTCAG 3 cut(s) 74, 177, 210
BseNI ACTGG 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 14
Bsp1720I GCTNAGC 1 cut(s) 186
BspCNI CTCAG 3 cut(s) 75, 178, 211
BsrI ACTGG 1 cut(s) 359
BssMI GATC 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 76
BstDEI CTNAG 4 cut(s) 83, 186, 193, 219
BstKTI GATC 1 cut(s) 17
BstMBI GATC 1 cut(s) 14
BstV2I GAAGAC 2 cut(s) 190, 273
Csp6I GTAC 2 cut(s) 212, 366
CviJI RGCY 4 cut(s) 82, 124, 190, 247
CviKI_1 RGCY 4 cut(s) 82, 124, 190, 247
CviQI GTAC 2 cut(s) 212, 366
DdeI CTNAG 4 cut(s) 83, 186, 193, 219
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 192
FaiI YATR 2 cut(s) 118, 225
FaqI GGGAC 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 192
HindIII AAGCTT 2 cut(s) 122, 245
HinfI GANTC 4 cut(s) 5, 234, 355, 398
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 2 cut(s) 43, 238
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 385
HpyF3I CTNAG 4 cut(s) 83, 186, 193, 219
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 6 cut(s) 154, 231, 251, 322, 355, 372
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 2 cut(s) 190, 273
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 3 cut(s) 29, 46, 87
MlyI GAGTC 1 cut(s) 364
MnlI CCTC 4 cut(s) 62, 72, 305, 335
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 3 cut(s) 11, 290, 338
NdeII GATC 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 3 cut(s) 5, 234, 398
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 192
RsaI GTAC 2 cut(s) 213, 367
RsaNI GTAC 2 cut(s) 212, 366
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 3 cut(s) 11, 290, 338
Sau3AI GATC 1 cut(s) 14
SchI GAGTC 1 cut(s) 364
SduI GDGCHC 1 cut(s) 192
SetI ASST 7 cut(s) 102, 126, 192, 249, 316, 327, 344
SgeI CNNG 9 cut(s) 55, 153, 219, 230, 250, 321, 338, 354, 371
Sse9I AATT 3 cut(s) 29, 46, 87
SspI AATATT 1 cut(s) 167
SstI GAGCTC 1 cut(s) 192
TaaI ACNGT 1 cut(s) 76
TasI AATT 3 cut(s) 29, 46, 87
TatI WGTACW 2 cut(s) 211, 365
TfiI GAWTC 3 cut(s) 5, 234, 398
Tru1I TTAA 3 cut(s) 11, 290, 338
Tru9I TTAA 3 cut(s) 11, 290, 338
TspDTI ATGAA 1 cut(s) 72
XapI RAATTY 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.