FvH4_6g03141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002389
Physical Location & Seq
Forward (+)
1757726 .. 1759322
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03141.t1

Sequence Viewer

Length: 1077 bp
ATGATCTTTGAGGGTGCAAAGCTTTCAAATTGTTACTTTCTAGTTTTTCATAGAATAAACACTTGCCTAACTTGTGGCAGTGGAGCCTTTAGAGAGATAGAAGATGTTATGGTCAACTGTAGTAAGTGCAAGGAGTATAGACAGCATTTATATTGCCTTGAAATGTCAGTAGAGGAGTATTTTCATGGTGGACGTATGTGGTACTGTGAAGGTTGCCAAGGGGTGAAGCCAGCTACCTCTTTTTACTGTCATGATGATCTCGACGATTGTGAATCTATGGACACCGGAGAAGGGCTGCAAAGCTCTTCTCCTCCTGCCGAAACAAGTAGTACTCCTGATGGTACCGACAAGAACTTGAAGGCCAACAAGACCGCGAAGATGAAAAAGAATAGTGAGAAGAAGAAATACAGTCAATCAATTGTGGATAAAACGGTGTTGGAGACAATACTTGAATGTAATGAAGAGGCTGAGGATGAGGATGAAGGCAGTGAAATCAATTGTGATAATTGTCAGGAGCTAGTTCATGATCAAGAAAAGCATGTTCCTGAAAAAGATCAATTTGATGCTGCCGATGATGCATTGGAAATGGATGAAGATGGCCATTCTACTCATGTTGCTGCGCAATCGGTTGCTATTCCAACTTGGAGGGGAAGCCTTAAGATATTGAACAATGTAAAGAAAGTGAGACATGAAATTATTGGTGGACTTGCTCATCTCTCAAGCATAGCCTGCCCTAAAGTGTTGGAGGAGTCGAAATTTCTAAAAACACGGCTTGTCCTAGATTTGGTTCGTAGGACTGATGTGTGGCCAAAAGTTTTTGACATGTATGAACCTAGTGATCAGAGTATTGCCCTCTATTTTTTTCCCGACAGTGAAACAGATGAAACAGATGAGAAGAGTTTCAACAACTTGATCGGTCGCATGATGCAGGAGGATCTAGCTATGATAGTTGATGTTGAAAAAGCTGAGCTTCTGATTTTCACTTCAAGCATGTTACCCAAGAAATATCAAAGAGTTAATTCAAAGATGTATCTATGGGGAGTCTTCAAGGAAAAGTGTCAAGTCGACATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

40.79

Weight (kDa)

4.82

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 215 - 349 2.2e-42 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 621
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 1065
AccII CGCG 1 cut(s) 374
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 942
AcoI YGGCCR 2 cut(s) 598, 806
AcsI RAATTY 1 cut(s) 755
AfaI GTAC 3 cut(s) 203, 331, 343
AfiI CCNNNNNNNGG 2 cut(s) 291, 784
AflII CTTAAG 1 cut(s) 656
AflIII ACRYGT 1 cut(s) 822
AluBI AGCT 7 cut(s) 22, 233, 303, 517, 941, 965, 970
AluI AGCT 7 cut(s) 22, 233, 303, 517, 941, 965, 970
Alw26I GTCTC 2 cut(s) 434, 679
AlwI GGATC 1 cut(s) 942
AoxI GGCC 3 cut(s) 360, 598, 806
ApeKI GCWGC 3 cut(s) 295, 566, 617
ApoI RAATTY 1 cut(s) 755
Asp700I GAANNNNTTC 1 cut(s) 899
Asp718I GGTACC 1 cut(s) 341
AspLEI GCGC 1 cut(s) 622
AsuHPI GGTGA 1 cut(s) 235
BalI TGGCCA 2 cut(s) 600, 808
BanI GGYRCC 1 cut(s) 341
BarI GAAGNNNNNNTAC 2 cut(s) 389, 421
BbsI GAAGAC 1 cut(s) 1036
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 3 cut(s) 282, 553, 604
BccI CCATC 2 cut(s) 332, 590
BceAI ACGGC 1 cut(s) 785
BclI TGATCA 2 cut(s) 526, 838
BcoDI GTCTC 2 cut(s) 434, 679
BfaI CTAG 5 cut(s) 41, 518, 779, 834, 938
BfmI CTRYAG 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 656
BisI GCNGC 3 cut(s) 296, 567, 618
BlpI GCTNAGC 1 cut(s) 966
BlsI GCNGC 3 cut(s) 297, 568, 619
BmcAI AGTACT 1 cut(s) 331
BmiI GGNNCC 2 cut(s) 85, 343
BmsI GCATC 3 cut(s) 553, 565, 915
BpiI GAAGAC 1 cut(s) 1036
Bpu10I CCTNAGC 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 966
BpuEI CTTGAG 1 cut(s) 703
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 784
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 3 cut(s) 478, 484, 595
BseLI CCNNNNNNNGG 2 cut(s) 291, 784
BseMII CTCAG 2 cut(s) 459, 957
BseRI GAGGAG 3 cut(s) 188, 300, 761
BseXI GCAGC 3 cut(s) 282, 553, 604
Bsh1236I CGCG 1 cut(s) 374
Bsh1285I CGRYCG 1 cut(s) 919
BshFI GGCC 3 cut(s) 362, 600, 808
BshNI GGYRCC 1 cut(s) 341
BsiEI CGRYCG 1 cut(s) 919
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 291, 784
BsmAI GTCTC 2 cut(s) 434, 679
BsnI GGCC 3 cut(s) 362, 600, 808
Bsp143I GATC 7 cut(s) 3, 256, 526, 553, 838, 912, 934
Bsp1720I GCTNAGC 1 cut(s) 966
BspACI CCGC 1 cut(s) 372
BspANI GGCC 3 cut(s) 362, 600, 808
BspCNI CTCAG 2 cut(s) 460, 958
BspFNI CGCG 1 cut(s) 374
BspHI TCATGA 2 cut(s) 250, 523
BspLI GGNNCC 2 cut(s) 85, 343
BspPI GGATC 1 cut(s) 942
BspQI GCTCTTC 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 341
BspTI CTTAAG 1 cut(s) 656
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 7 cut(s) 3, 256, 526, 553, 838, 912, 934
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 6 cut(s) 119, 206, 248, 410, 433, 872
Bst6I CTCTTC 3 cut(s) 310, 456, 890
BstAFI CTTAAG 1 cut(s) 656
BstAPI GCANNNNNTGC 1 cut(s) 729
BstC8I GCNNGC 2 cut(s) 231, 730
BstDEI CTNAG 2 cut(s) 468, 966
BstF5I GGATG 3 cut(s) 478, 484, 595
BstFNI CGCG 1 cut(s) 374
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 7 cut(s) 6, 259, 529, 556, 841, 915, 937
BstMAI GTCTC 2 cut(s) 434, 679
BstMBI GATC 7 cut(s) 3, 256, 526, 553, 838, 912, 934
BstMCI CGRYCG 1 cut(s) 919
BstMWI GCNNNNNNNGC 2 cut(s) 575, 729
BstNSI RCATGY 3 cut(s) 542, 826, 994
BstSFI CTRYAG 1 cut(s) 118
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 3 cut(s) 282, 553, 604
BstV2I GAAGAC 1 cut(s) 1036
BstX2I RGATCY 1 cut(s) 934
BstYI RGATCY 1 cut(s) 934
BsuRI GGCC 3 cut(s) 362, 600, 808
BtsCI GGATG 3 cut(s) 478, 484, 595
BtsI GCAGTG 2 cut(s) 85, 493
BtsIMutI CAGTG 3 cut(s) 85, 493, 877
Cac8I GCNNGC 2 cut(s) 231, 730
CciI TCATGA 2 cut(s) 250, 523
CfoI GCGC 1 cut(s) 622
Csp6I GTAC 3 cut(s) 202, 330, 342
CviAII CATG 9 cut(s) 185, 251, 524, 539, 611, 689, 823, 922, 991
CviQI GTAC 3 cut(s) 202, 330, 342
DdeI CTNAG 2 cut(s) 468, 966
DpnI GATC 7 cut(s) 5, 258, 528, 555, 840, 914, 936
DpnII GATC 7 cut(s) 3, 256, 526, 553, 838, 912, 934
EaeI YGGCCR 2 cut(s) 598, 806
Eam1104I CTCTTC 3 cut(s) 310, 456, 890
EarI CTCTTC 3 cut(s) 310, 456, 890
Eco130I CCWWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 217
EcoT22I ATGCAT 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 9 cut(s) 188, 254, 527, 542, 614, 692, 826, 925, 994
FalI AAGNNNNNCTT 2 cut(s) 954, 986
FatI CATG 9 cut(s) 184, 250, 523, 538, 610, 688, 822, 921, 990
FbaI TGATCA 2 cut(s) 526, 838
FblI GTMKAC 1 cut(s) 1065
Fnu4HI GCNGC 3 cut(s) 296, 567, 618
FokI GGATG 3 cut(s) 485, 491, 602
Fsp4HI GCNGC 3 cut(s) 296, 567, 618
FspBI CTAG 5 cut(s) 41, 518, 779, 834, 938
FspI TGCGCA 1 cut(s) 621
GlaI GCGC 1 cut(s) 621
GluI GCNGC 3 cut(s) 296, 567, 618
HaeIII GGCC 3 cut(s) 362, 600, 808
HapII CCGG 1 cut(s) 285
HhaI GCGC 1 cut(s) 622
Hin1II CATG 9 cut(s) 188, 254, 527, 542, 614, 692, 826, 925, 994
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HincII GTYRAC 2 cut(s) 115, 1066
HindII GTYRAC 2 cut(s) 115, 1066
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 272, 749, 1041
HpaII CCGG 1 cut(s) 285
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 4 cut(s) 115, 191, 704, 1066
Hpy188I TCNGA 2 cut(s) 843, 975
Hpy188III TCNNGA 8 cut(s) 251, 260, 335, 512, 524, 530, 545, 866
Hpy8I GTNNAC 4 cut(s) 115, 191, 704, 1066
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 4 cut(s) 203, 284, 352, 476
HpyCH4III ACNGT 6 cut(s) 119, 206, 248, 410, 433, 872
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 5 cut(s) 17, 129, 298, 578, 928
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 729
HpyF3I CTNAG 2 cut(s) 468, 966
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 9 cut(s) 188, 254, 527, 542, 614, 692, 826, 925, 994
HspAI GCGC 1 cut(s) 620
KpnI GGTACC 1 cut(s) 345
Ksp22I TGATCA 2 cut(s) 526, 838
Kzo9I GATC 7 cut(s) 3, 256, 526, 553, 838, 912, 934
LguI GCTCTTC 1 cut(s) 310
LmnI GCTCC 2 cut(s) 83, 514
LpnPI CCDG 8 cut(s) 243, 298, 327, 348, 497, 558, 742, 914
Lsp1109I GCAGC 3 cut(s) 282, 553, 604
LweI GCATC 3 cut(s) 553, 565, 915
MaeI CTAG 5 cut(s) 41, 518, 779, 834, 938
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 2 cut(s) 32, 993
MalI GATC 7 cut(s) 5, 258, 528, 555, 840, 914, 936
MboI GATC 7 cut(s) 3, 256, 526, 553, 838, 912, 934
MboII GAAGA 9 cut(s) 113, 297, 388, 409, 412, 473, 605, 907, 1036
MfeI CAATTG 2 cut(s) 417, 496
MflI RGATCY 1 cut(s) 934
MlsI TGGCCA 2 cut(s) 600, 808
MluCI AATT 8 cut(s) 28, 417, 496, 505, 557, 693, 755, 1018
MluNI TGGCCA 2 cut(s) 600, 808
MlyI GAGTC 2 cut(s) 758, 1050
MmeI TCCRAC 3 cut(s) 417, 662, 723
Mox20I TGGCCA 2 cut(s) 600, 808
Mph1103I ATGCAT 1 cut(s) 580
MroXI GAANNNNTTC 1 cut(s) 899
MscI TGGCCA 2 cut(s) 600, 808
MseI TTAA 2 cut(s) 657, 1017
Msp20I TGGCCA 2 cut(s) 600, 808
MspCI CTTAAG 1 cut(s) 656
MspI CCGG 1 cut(s) 285
MunI CAATTG 2 cut(s) 417, 496
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 575, 729
NdeII GATC 7 cut(s) 3, 256, 526, 553, 838, 912, 934
NlaIII CATG 9 cut(s) 188, 254, 527, 542, 614, 692, 826, 925, 994
NlaIV GGNNCC 2 cut(s) 85, 343
NsbI TGCGCA 1 cut(s) 621
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 3 cut(s) 542, 826, 994
PagI TCATGA 2 cut(s) 250, 523
PciI ACATGT 1 cut(s) 822
PciSI GCTCTTC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 899
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 3 cut(s) 297, 568, 619
PleI GAGTC 2 cut(s) 757, 1049
PpsI GAGTC 2 cut(s) 757, 1049
PscI ACATGT 1 cut(s) 822
PspN4I GGNNCC 2 cut(s) 85, 343
PsuI RGATCY 1 cut(s) 934
RsaI GTAC 3 cut(s) 203, 331, 343
RsaNI GTAC 3 cut(s) 202, 330, 342
SalI GTCGAC 1 cut(s) 1064
SapI GCTCTTC 1 cut(s) 310
SaqAI TTAA 2 cut(s) 657, 1017
SatI GCNGC 3 cut(s) 296, 567, 618
Sau3AI GATC 7 cut(s) 3, 256, 526, 553, 838, 912, 934
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 2 cut(s) 758, 1050
SfaNI GCATC 3 cut(s) 553, 565, 915
SfcI CTRYAG 1 cut(s) 118
SmlI CTYRAG 2 cut(s) 656, 718
SmoI CTYRAG 2 cut(s) 656, 718
Sse9I AATT 8 cut(s) 28, 417, 496, 505, 557, 693, 755, 1018
SsiI CCGC 1 cut(s) 372
SspMI CTAG 5 cut(s) 41, 518, 779, 834, 938
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 6 cut(s) 119, 206, 248, 410, 433, 872
TaiI ACGT 1 cut(s) 196
TaqI TCGA 3 cut(s) 261, 752, 1065
TaqII GACCGA 1 cut(s) 905
TasI AATT 8 cut(s) 28, 417, 496, 505, 557, 693, 755, 1018
TatI WGTACW 1 cut(s) 329
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 657, 1017
Tru9I TTAA 2 cut(s) 657, 1017
TscAI CASTG 3 cut(s) 85, 493, 877
TseI GCWGC 3 cut(s) 295, 566, 617
TspRI CASTG 3 cut(s) 85, 493, 877
Vha464I CTTAAG 1 cut(s) 656
XapI RAATTY 1 cut(s) 755
XceI RCATGY 3 cut(s) 542, 826, 994
XmiI GTMKAC 1 cut(s) 1065
XmnI GAANNNNTTC 1 cut(s) 899
XspI CTAG 5 cut(s) 41, 518, 779, 834, 938
ZrmI AGTACT 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.